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Archives of Virology

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20.08.2018 | Annotated Sequence Record

A novel monopartite dsRNA virus isolated from the phytopathogenic fungus Ustilaginoidea virens strain GZ-2

verfasst von: Tingting Zhang, Xiangxing Zeng, Zhu Zeng, Zuquan Hu, Feiyu Yang

Erschienen in: Archives of Virology | Ausgabe 12/2018

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Abstract

In this study, we describe a novel mycovirus isolated from Ustilaginoidea virens strain GZ-2, which was designated “Ustilaginoidea virens nonsegmented virus 2” (UvNV-2). The genome of UvNV-2 contains two overlapping open reading frames (ORFs). ORF1 encodes an unknown protein, and ORF2 encodes a putative RNA-dependent RNA polymerase (RdRp), which is most closely related to that of Purpureocillium lilacinum nonsegmented virus 1 (PINV-1) and is likely to be expressed by a + 1 ribosomal frameshift within the sequence CCC_UUU_UAG. A phylogenetic analysis of the RdRp of UvNV-2 showed that UvNV-2 is an unclassified mycovirus.

Mertens P (2004) The dsRNA viruses. Virus Res 101:3–13CrossRef

Pearson MN, Beever RE, Boine B, Arthur K (2009) Mycoviruses of filamentous fungi and their relevance to plant pathology. Mol Plant Pathol 10:115–128CrossRef

Ghabrial SA, Suzuki N (2008) Fungal viruses. Encycl Virol 2:284–291CrossRef

Ghabrial SA, Casto´n JR, Jiang D, Nibert ML, Suzuki N (2015) 50-plus years of fungal viruses. Virology 479:356–368CrossRef

Zhou Q, Zhong J, Hu Y, Gao BD (2016) A novel nonsegmented double-stranded RNA mycovirus identified in the phytopathogenic fungus Nigrospora oryzae shows similarity to partitivirus-like viruses. Arch Virol 161:229–232CrossRef

Herrero N (2016) A novel monopartite dsRNA virus isolated from the entomopathogenic and nematophagous fungus Purpureocillium lilacinum. Arch Virol 161:3375–3384CrossRef

Zhang T, Jiang Y, Dong W (2014) A novel monopartite dsRNA virus isolated from the phytopathogenic fungus Ustilaginoidea virens and ancestrally related to a mitochondria-associated dsRNA in the green alga Bryopsis. Virology 462:227–235CrossRef

Sun X, Kang S, Zhang Y, Tan X, Yu Y, He H, Zhang X, Liu Y, Wang S, Sun W (2013) Genetic diversity and population structure of rice pathogen Ustilaginoidea virens in China. PLoS One 8:e76879CrossRef

Tanaka E, Ashizawa T, Sonoda R, Tanaka C (2008) Villosiclava virens gen. nov., comb. nov., the teleomorph of Ustilaginoidea virens, the causal agent of rice false smut. Mycotaxon 106:491–501

10.

Zhang T, Jiang Y, Huang J, Dong W (2013) Complete genome sequence of a putative novel victorivirus from Ustilaginoidea virens. Arch Virol 158:1403–1406CrossRef

11.

Zhang T, Jiang Y, Huang J, Dong W (2013) Genomic organization of a novel partitivirus from the phytopathogenic fungus Ustilaginoidea virens. Arch Virol 158:2415–2419CrossRef

12.

Zhong J, Zhu JZ, Lei XH, Chen D, Zhu HJ, Gao BD (2014) Complete genome sequence and organization of a novel virus from the rice false smut fungus Ustilaginoidea virens. Virus Genes 48:329–333CrossRef

13.

Jiang Y, Zhang T, Luo C, Jiang D, Li G, Li Q, Hsiang T, Huang J (2015) Prevalence and diversity of mycoviruses infecting the plant pathogen Ustilaginoidea virens. Virus Res 195:47–56CrossRef

14.

Zhong J, ChengYC Gao BD, Zhou Q, Zhu HJ (2017) Mycoviruses in the plant pathogen Ustilaginoidea virens are not correlated with the genetic backgrounds of its hosts. Int J Mol Sci 18:963CrossRef

15.

Dodds JA, Morris TJ (1983) Double-stranded RNA from plants infected with closteroviruses. Phytopathology 73:419–423CrossRef

16.

Froussard P (1992) A random-PCR method (rPCR) to construct whole cDNA library from low amounts of RNA. Nucleic Acids Res 20:2900CrossRef

17.

Lambden PR, Cooke SJ, Caul EO, Clarke IN (1992) Cloning of noncultivatable human rotavirus by single primer amplification. J Virol 66:1817–1822PubMedPubMedCentral

18.

Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG, Valentin F (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23:2947–2948CrossRef

19.

Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739CrossRef

20.

Firth A, Jagger B, Wise H, Nelson C, Parsawar K, Wills N, Napthine S, Taubenberger J, Digard P, Atkins J (2012) Ribosomal frameshifting used in influenza A virus expression occurs within the sequence UCC_UUU_CGU and is in the +1 direction. Open Biol. https://doi.org/10.1098/rsob.120109 CrossRefPubMedPubMedCentral

21.

Agranovsky A, Koonin EV, Boyko VP, Maiss E, Frötschl R, Lunina NA, Atabekov JG (1994) Beet yellows closterovirus: complete genome structure and identification of a leader papainlike thiol protease. Virology 198:311–324CrossRef

22.

Klobutcher LA, Farabaugh PJ (2002) Shifty ciliates. Frequent programmed translational frameshifting in euplotids. Cell 111:763–766CrossRef

23.

Weiss RB, Dunn DM, Atkins JF, Gesteland RF (1987) Slippery runs, shifty stops, backward steps, and forward hops: − 2, − 1, + 1, + 2, + 5, and + 6 ribosomal frameshifting. Cold Spring Harb Symp Quant Biol 52:687–693CrossRef

24.

Koga R, Fukuhara T, Nitta T (1998) Molecular characterization of a single mitochondria-associated double-stranded RNA in the green alga Bryopsis. Plant Mol Biol 36:717–724CrossRef

25.

Shi M, Neville P, Nicholson J, Eden JS, Imrie A, Holmes EC (2017) High resolution meta-transcriptomics reveals the ecological dynamics of mosquito-associated RNA viruses in Western Australia. J Virol. https://doi.org/10.1128/JVI.00680-17 CrossRefPubMedPubMedCentral

Titel: A novel monopartite dsRNA virus isolated from the phytopathogenic fungus Ustilaginoidea virens strain GZ-2
verfasst von: Tingting Zhang
Xiangxing Zeng
Zhu Zeng
Zuquan Hu
Feiyu Yang
Publikationsdatum: 20.08.2018
Verlag: Springer Vienna
Erschienen in: Archives of Virology / Ausgabe 12/2018
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-018-3976-6

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A novel monopartite dsRNA virus isolated from the phytopathogenic fungus Ustilaginoidea virens strain GZ-2

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