Skip to main content
Erschienen in: Archives of Virology 7/2020

13.05.2020 | Annotated Sequence Record

A novel putative betapartitivirus isolated from the plant-pathogenic fungus Rhizoctonia solani

verfasst von: Yi Chen, Jia En Su, Xi Yun Qin, Zhi Yong Fan, Xiao Hai Zhang, Qing Yu, Zhen Yuan Xia, Cong Ming Zou, Gao Kun Zhao, Zhong Long Lin

Erschienen in: Archives of Virology | Ausgabe 7/2020

Einloggen, um Zugang zu erhalten

Abstract

In this study, we describe the genome sequence of a novel double-stranded RNA (dsRNA) mycovirus, designated as “Rhizoctonia solani partitivirus 15” (RsPV15), from the phytopathogenic fungus Rhizoctonia solani. RsPV15 consists of two genomic double-stranded RNA segments, dsRNA-1 and dsRNA-2, which are 2433 bp and 2350 bp long, respectively. Each of the dsRNA segments contains a single open reading frame, encoding the putative RNA-dependent RNA polymerase and coat protein, respectively. Homology searches and phylogenetic analysis suggested that RsPV15 is a new member of the genus Betapartitivirus within the family Partitiviridae.
Anhänge
Nur mit Berechtigung zugänglich
Literatur
1.
Zurück zum Zitat Ghabrial SA, Suzuki N (2009) Viruses of plant pathogenic fungi. Annu Rev Phytopathol 47:353–384CrossRef Ghabrial SA, Suzuki N (2009) Viruses of plant pathogenic fungi. Annu Rev Phytopathol 47:353–384CrossRef
2.
Zurück zum Zitat Ghabrial SA, Castón JR, Jiang D, Nibert ML, Suzuki N (2015) 50-plus years of fungal viruses. Virology 479:356–368CrossRef Ghabrial SA, Castón JR, Jiang D, Nibert ML, Suzuki N (2015) 50-plus years of fungal viruses. Virology 479:356–368CrossRef
3.
Zurück zum Zitat Xie J, Jiang D (2014) New insights into mycoviruses and exploration for the biological control of crop fungal diseases. Annu Rev Phytopathol 52:45–68CrossRef Xie J, Jiang D (2014) New insights into mycoviruses and exploration for the biological control of crop fungal diseases. Annu Rev Phytopathol 52:45–68CrossRef
4.
Zurück zum Zitat Nuss DL (1992) Biological control of chestnut blight: an example of virus-mediated attenuation of fungal pathogenesis. Microbiol Rev 56:561–576CrossRef Nuss DL (1992) Biological control of chestnut blight: an example of virus-mediated attenuation of fungal pathogenesis. Microbiol Rev 56:561–576CrossRef
5.
Zurück zum Zitat Sato Y, Castón JR, Suzuki N (2018) The biological attributes, genome architecture and packaging of diverse multi-component fungal viruses. Curr Opin Virol 33:55–65CrossRef Sato Y, Castón JR, Suzuki N (2018) The biological attributes, genome architecture and packaging of diverse multi-component fungal viruses. Curr Opin Virol 33:55–65CrossRef
6.
Zurück zum Zitat Vainio EJ, Chiba S, Ghabrial SA, Maiss E, Roossinck M, Sabanadzovic S, Nibert M (2018) ICTV virus taxonomy profile: Partitiviridae. J Gen Virol 99:17CrossRef Vainio EJ, Chiba S, Ghabrial SA, Maiss E, Roossinck M, Sabanadzovic S, Nibert M (2018) ICTV virus taxonomy profile: Partitiviridae. J Gen Virol 99:17CrossRef
7.
Zurück zum Zitat Cubeta MA, Vilgalys R (1997) Population biology of the Rhizoctonia solani complex. Phytopathology 87:480–484CrossRef Cubeta MA, Vilgalys R (1997) Population biology of the Rhizoctonia solani complex. Phytopathology 87:480–484CrossRef
8.
Zurück zum Zitat Castanho B, Butler EE, Shepherd RJ (1978) Association of double-stranded-RNA with Rhizoctonia decline. Phytopathology 68:1515–1519CrossRef Castanho B, Butler EE, Shepherd RJ (1978) Association of double-stranded-RNA with Rhizoctonia decline. Phytopathology 68:1515–1519CrossRef
9.
Zurück zum Zitat Bharathan N, Saso H, Gudipati L, Bharathan S, Whited K, Anthony K (2005) Double-stranded RNA: distribution and analysis among isolates of Rhizoctonia solani AG-2 to-13. Plant Pathol 54:196–203CrossRef Bharathan N, Saso H, Gudipati L, Bharathan S, Whited K, Anthony K (2005) Double-stranded RNA: distribution and analysis among isolates of Rhizoctonia solani AG-2 to-13. Plant Pathol 54:196–203CrossRef
10.
Zurück zum Zitat Jian J, Lakshman DK, Tavantzis SM (1997) Association of distinct double-stranded RNAs with enhanced or diminished virulence in Rhizoctonia solani infecting potato. Mol Plant-Microbe Interact 10:1002–1009CrossRef Jian J, Lakshman DK, Tavantzis SM (1997) Association of distinct double-stranded RNAs with enhanced or diminished virulence in Rhizoctonia solani infecting potato. Mol Plant-Microbe Interact 10:1002–1009CrossRef
11.
Zurück zum Zitat Finkler A, Koltin Y, Barash I, Sneh B, Pozniak D (1985) Isolation of a virus from virulent strains of Rhizoctonia solani. J Gen Virol 66:1221–1232CrossRef Finkler A, Koltin Y, Barash I, Sneh B, Pozniak D (1985) Isolation of a virus from virulent strains of Rhizoctonia solani. J Gen Virol 66:1221–1232CrossRef
12.
Zurück zum Zitat Das S, Falloon RE, Stewart A, Pitman AR (2014) Molecular characterisation of an endornavirus from Rhizoctonia solani AG- 3PT infecting potato. Fungal Biol 118:924–934CrossRef Das S, Falloon RE, Stewart A, Pitman AR (2014) Molecular characterisation of an endornavirus from Rhizoctonia solani AG- 3PT infecting potato. Fungal Biol 118:924–934CrossRef
13.
Zurück zum Zitat Zheng L, Shu C, Zhang M, Yang M, Zhou E (2019) Molecular characterization of a novel endornavirus conferring hypovirulence in rice sheath blight fungus Rhizoctonia solani AG-1 IA strain GD-2. Viruses 11:178CrossRef Zheng L, Shu C, Zhang M, Yang M, Zhou E (2019) Molecular characterization of a novel endornavirus conferring hypovirulence in rice sheath blight fungus Rhizoctonia solani AG-1 IA strain GD-2. Viruses 11:178CrossRef
14.
Zurück zum Zitat Das S, Falloon RE, Stewart A, Pitman AR (2016) Novel mitoviruses in Rhizoctonia solani AG-3PT infecting potato. Fungal Biol 120:338–350CrossRef Das S, Falloon RE, Stewart A, Pitman AR (2016) Novel mitoviruses in Rhizoctonia solani AG-3PT infecting potato. Fungal Biol 120:338–350CrossRef
15.
Zurück zum Zitat Strauss EE, Lakshman DK, Tavantzis SM (2000) Molecular characterization of the genome of a partitivirus from the basidiomycete Rhizoctonia solani. J Gen Virol. 81:549–555CrossRef Strauss EE, Lakshman DK, Tavantzis SM (2000) Molecular characterization of the genome of a partitivirus from the basidiomycete Rhizoctonia solani. J Gen Virol. 81:549–555CrossRef
16.
Zurück zum Zitat Zheng L, Zhang M, Chen Q, Zhu M, Zhou E (2014) A novel mycovirus closely related to viruses in the genus Alphapartitivirus confers hypovirulence in the phytopathogenic fungus Rhizoctonia solani. Virology 456:220–226CrossRef Zheng L, Zhang M, Chen Q, Zhu M, Zhou E (2014) A novel mycovirus closely related to viruses in the genus Alphapartitivirus confers hypovirulence in the phytopathogenic fungus Rhizoctonia solani. Virology 456:220–226CrossRef
17.
Zurück zum Zitat Zhang M, Zheng L, Liu C, Shu C, Zhou E (2018) Characterization of a novel dsRNA mycovirus isolated from strain A105 of Rhizoctonia solani AG-1 IA. Arch Virol 163:427–430CrossRef Zhang M, Zheng L, Liu C, Shu C, Zhou E (2018) Characterization of a novel dsRNA mycovirus isolated from strain A105 of Rhizoctonia solani AG-1 IA. Arch Virol 163:427–430CrossRef
18.
Zurück zum Zitat Lyu R, Zhang Y, Tang Q, Li Y, Cheng J, Fu Y, Xie J (2018) Two alphapartitiviruses co-infecting a single isolate of the plant pathogenic fungus Rhizoctonia solani. Arch Virol 163:515–520CrossRef Lyu R, Zhang Y, Tang Q, Li Y, Cheng J, Fu Y, Xie J (2018) Two alphapartitiviruses co-infecting a single isolate of the plant pathogenic fungus Rhizoctonia solani. Arch Virol 163:515–520CrossRef
19.
Zurück zum Zitat Liu C, Zeng M, Zhang M, Shu C, Zhou E (2018) Complete nucleotide sequence of a partitivirus from Rhizoctonia solani AG-1 IA strain C24. Viruses 10:703CrossRef Liu C, Zeng M, Zhang M, Shu C, Zhou E (2018) Complete nucleotide sequence of a partitivirus from Rhizoctonia solani AG-1 IA strain C24. Viruses 10:703CrossRef
20.
Zurück zum Zitat Chen Y, Gai XT, Chen RX, Li CX, Zhao GK, Xia ZY, Zhong J (2019) Characterization of three novel betapartitiviruses co-infecting the phytopathogenic fungus Rhizoctonia solani. Virus Res 270:197649CrossRef Chen Y, Gai XT, Chen RX, Li CX, Zhao GK, Xia ZY, Zhong J (2019) Characterization of three novel betapartitiviruses co-infecting the phytopathogenic fungus Rhizoctonia solani. Virus Res 270:197649CrossRef
21.
Zurück zum Zitat Picarelli MAS, Forgia M, Rivas EB, Nerva L, Chiapello M, Turina M, Colariccio A (2019) Extreme diversity of mycoviruses present in isolates of Rhizoctonia solani AG2-2 LP from Zoysia japonica from Brazil. Front Cell Infect Microbiol 9:244CrossRef Picarelli MAS, Forgia M, Rivas EB, Nerva L, Chiapello M, Turina M, Colariccio A (2019) Extreme diversity of mycoviruses present in isolates of Rhizoctonia solani AG2-2 LP from Zoysia japonica from Brazil. Front Cell Infect Microbiol 9:244CrossRef
22.
Zurück zum Zitat Velasco L, Arjona-Girona I, Cretazzo E, López-Herrera C (2019) Viromes in Xylariaceae fungi infecting avocado in Spain. Virology 532:11–21CrossRef Velasco L, Arjona-Girona I, Cretazzo E, López-Herrera C (2019) Viromes in Xylariaceae fungi infecting avocado in Spain. Virology 532:11–21CrossRef
23.
Zurück zum Zitat Lin YH, Fujita M, Chiba S, Hyodo K, Andika IB, Suzuki N, Kondo H (2019) Two novel fungal negative-strand RNA viruses related to mymonaviruses and phenuiviruses in the shiitake mushroom (Lentinula edodes). Virology 533:125–136CrossRef Lin YH, Fujita M, Chiba S, Hyodo K, Andika IB, Suzuki N, Kondo H (2019) Two novel fungal negative-strand RNA viruses related to mymonaviruses and phenuiviruses in the shiitake mushroom (Lentinula edodes). Virology 533:125–136CrossRef
24.
Zurück zum Zitat Nerva L, Forgia M, Ciuffo M, Chitarra W, Chiapello M, Vallino M, Turina M (2019) The mycovirome of a fungal collection from the sea cucumber Holothuria polii. Virus Res 273:197737CrossRef Nerva L, Forgia M, Ciuffo M, Chitarra W, Chiapello M, Vallino M, Turina M (2019) The mycovirome of a fungal collection from the sea cucumber Holothuria polii. Virus Res 273:197737CrossRef
25.
Zurück zum Zitat Abdoulaye AH, Foda MF, Kotta-Loizou I (2019) Viruses infecting the plant pathogenic fungus Rhizoctonia solani. Viruses 11:1113CrossRef Abdoulaye AH, Foda MF, Kotta-Loizou I (2019) Viruses infecting the plant pathogenic fungus Rhizoctonia solani. Viruses 11:1113CrossRef
26.
Zurück zum Zitat Zheng L, Liu H, Zhang M, Cao X, Zhou E (2013) The complete genomic sequence of a novel mycovirus from Rhizoctonia solani AG-1 IA strain B275. Arch Virol 158:1609–1612CrossRef Zheng L, Liu H, Zhang M, Cao X, Zhou E (2013) The complete genomic sequence of a novel mycovirus from Rhizoctonia solani AG-1 IA strain B275. Arch Virol 158:1609–1612CrossRef
27.
Zurück zum Zitat Zhong J, Chen C, Gao B (2015) Genome sequence of a novel mycovirus of Rhizoctonia solani, a plant pathogenic fungus. Virus Genes 51:167–170CrossRef Zhong J, Chen C, Gao B (2015) Genome sequence of a novel mycovirus of Rhizoctonia solani, a plant pathogenic fungus. Virus Genes 51:167–170CrossRef
28.
Zurück zum Zitat Andika IB, Wei S, Cao C, Salaipeth L, Kondo H, Sun L (2017) Phytopathogenic fungus hosts a plant virus: A naturally occurring cross-kingdom viral infection. Proc Natl Acad Sci USA 114:12267–12272CrossRef Andika IB, Wei S, Cao C, Salaipeth L, Kondo H, Sun L (2017) Phytopathogenic fungus hosts a plant virus: A naturally occurring cross-kingdom viral infection. Proc Natl Acad Sci USA 114:12267–12272CrossRef
29.
Zurück zum Zitat Morris TJ, Dodds JA (1979) Isolation and analysis of double stranded RNA from virus-infected plant and fungal tissue. Phytopathology 69:854–858CrossRef Morris TJ, Dodds JA (1979) Isolation and analysis of double stranded RNA from virus-infected plant and fungal tissue. Phytopathology 69:854–858CrossRef
30.
Zurück zum Zitat Zhong J, Lei XH, Zhu JZ, Song G, Zhang YD, Chen Y, Gao BD (2014) Detection and sequence analysis of two novel co-infecting double-strand RNA mycoviruses in Ustilaginoidea virens. Arch Virol 159:3063–307019CrossRef Zhong J, Lei XH, Zhu JZ, Song G, Zhang YD, Chen Y, Gao BD (2014) Detection and sequence analysis of two novel co-infecting double-strand RNA mycoviruses in Ustilaginoidea virens. Arch Virol 159:3063–307019CrossRef
31.
Zurück zum Zitat Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882CrossRef Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882CrossRef
32.
Zurück zum Zitat Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729CrossRef Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729CrossRef
33.
Zurück zum Zitat Buck KW (1996) Comparison of the replication of positive stranded RNA viruses of plants and animals. Adv Virus Res 47:159–251CrossRef Buck KW (1996) Comparison of the replication of positive stranded RNA viruses of plants and animals. Adv Virus Res 47:159–251CrossRef
Metadaten
Titel
A novel putative betapartitivirus isolated from the plant-pathogenic fungus Rhizoctonia solani
verfasst von
Yi Chen
Jia En Su
Xi Yun Qin
Zhi Yong Fan
Xiao Hai Zhang
Qing Yu
Zhen Yuan Xia
Cong Ming Zou
Gao Kun Zhao
Zhong Long Lin
Publikationsdatum
13.05.2020
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 7/2020
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-020-04598-3

Weitere Artikel der Ausgabe 7/2020

Archives of Virology 7/2020 Zur Ausgabe

Leitlinien kompakt für die Innere Medizin

Mit medbee Pocketcards sicher entscheiden.

Seit 2022 gehört die medbee GmbH zum Springer Medizin Verlag

Update Innere Medizin

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.