Introduction
Materials and methods
Retinal slice preparation
Solutions and electrophysiological recording
Electrophysiological recording and data acquisition
MPE microscopy and image acquisition
Image processing and deconvolution
3D morphological reconstruction and measurements
Statistical analysis and data presentation
Principal component and cluster analysis
Results
Visual targeting and identification of AII amacrine cells in retinal slices
Deconvolution of fluorescence image stacks
Quantitative morphological reconstruction
Qualitative morphological characteristics of AII amacrine cells
Morphological relationship between AII amacrine cells and presynaptic rod bipolar cells
Quantitative morphological characteristics and branch ordering of AII amacrine cells
Parameter | Mean ± SD (n = 43) | Range |
---|---|---|
Soma volume (µm3) | 280 ± 110 | 60 to 560 |
Soma surface area (µm2) | 197 ± 67 | 68 to 338 |
Soma projection area (µm2) | 44 ± 13 | 18 to 84 |
Soma projection perimeter (µm) | 25.8 ± 4.3 | 16.3 to 37.1 |
Soma projection Feret maximum (µm) | 9.1 ± 1.4 | 5.8 to 12.8 |
Soma projection Feret minimum (µm) | 6.7 ± 1.1 | 4.3 to 9.4 |
Number of primary dendrites | 3.4 ± 1.9 | 1 to 9 |
Length of main primary dendrite (µm) | 12.9 ± 6.0 | 5.7 to 36.2 |
Maximum diameter of main primary dendrite (µm)a
| 3.06 ± 0.47 | 1.87 to 4.33 |
Dendritic length (µm) | 1080 ± 270 | 500 to 1630 |
Dendritic surface area (µm2) | 1770 ± 570 | 850 to 3160 |
Dendritic volume (µm3) | 310 ± 110 | 140 to 620 |
Average dendritic diameter (µm)a
| 0.450 ± 0.070 | 0.307 to 0.600 |
Average branch segment path length (µm)a
| 3.19 ± 0.56 | 2.34 to 4.99 |
Maximum branch order (central shaft ordering) | 22.8 ± 6.2 | 10 to 39 |
Maximum branch order (centrifugal ordering) | 26.6 ± 6.8 | 12 to 40 |
Average partition asymmetrya
| 0.619 ± 0.038 | 0.502 to 0.687 |
Number of nodes | 165 ± 63 | 46 to 311 |
Number of endings | 178 ± 66 | 64 to 324 |
Number of varicosities | 125 ± 40 | 59 to 268 |
2D convex hull area, arboreal dendrites (µm2)b
| 810 ± 270 | 400 to 1560 |
2D convex hull perimeter, arboreal dendrites (µm)b
| 108 ± 18 | 79 to 154 |
2D convex hull Feret max., arboreal dendrites (µm)b
| 40.4 ± 6.6 | 30.3 to 55.3 |
2D convex hull Feret min., arboreal dendrites (µm)b
| 27.9 ± 5.4 | 19.3 to 42.9 |
2D convex hull area, lobular dendrites (µm2)b
| 380 ± 140 | 140 to 690 |
2D convex hull perimeter, lobular dendrites (µm)b
| 78 ± 16 | 45 to 110 |
2D convex hull Feret max., lobular dendrites (µm)b
| 30.1 ± 6.9 | 15.0 to 42.9 |
2D convex hull Feret min., lobular dendrites (µm)b
| 18.0 ± 3.6 | 11.5 to 27.6 |
3D convex hull volume, dendritic tree (µm3) | 27.0 ± 8.3 × 103
| 11.2 to 62.9 × 103
|
3D convex hull surface area, dendritic tree (µm2) | 5160 ± 940 | 3080 to 8970 |
Euclidean distance from soma (mean) (µm)a
| 37.7 ± 2.9 | 31.0 to 43.1 |
Euclidean distance from soma (maximum) (µm)a
| 57.9 ± 4.4 | 49.5 to 69.0 |
Bifurcation angle (mean) (deg; Bif_ampl_remote)a
| 86.0 ± 3.0 | 79.9 to 94.0 |
Bifurcation angle (standard deviation)a
| 31.7 ± 2.4 | 26.7 to 36.4 |
Bifurcation tilt (mean) (deg; Bif_tilt_remote)a
| 104.8 ± 3.6 | 97.2 to 115.7 |
Bifurcation tilt (standard deviation)a
| 28.2 ± 2.2 | 22.2 to 33.7 |
Contractiona
| 0.887 ± 0.016 | 0.859 to 0.924 |
Fractal dimensiona
| 1.0405 ± 0.0080 | 1.0203 to 1.0580 |
Helicity (mean)a
| −0.1 ± 1.4 × 10−3
| −2.8 to 3.9 × 10−3
|
Dendritic parameters as a function of segment branch order
Dendritic parameters as a function of location in the IPL
Dendritic parameters as a function of dendritic field area and retinal eccentricity
Relationship between arbor volume and branch density
Sholl analysis reflects the bistratified morphology
Quantitative analysis of dendritic varicosities
Principal component and cluster analysis reveals morphological homogeneity of reconstructed cells
PC 1 | PC 2 | |
---|---|---|
Eigenvalue | 6.9 | 4.1 |
Fraction of total variability accounted for by principal component | 26 % | 15 % |
Coefficients | ||
Soma surface area (µm2) | −4.9 |
24
|
Soma projection Feret maximum (µm) | −0.0016 |
0.49
|
Number of primary dendrites | 0.062 | 0.18 |
Length of main primary dendrite (µm) | 0.040 | −0.77 |
Maximum diameter of main primary dendrite (µm) | −0.024 | 0.063 |
Dendritic length of inner nuclear layer (µm) |
2.1
| 1.5 |
Dendritic length of S1 (µm) |
4.5
| 3.6 |
Dendritic length of S2 (µm) |
11
| 2.4 |
Dendritic length of S3 (µm) |
8.4
|
9.8
|
Dendritic length of S4 (µm) |
40
| 16 |
Dendritic length of S5 (µm) |
26
| −29
|
Dendritic length of ganglion cell layer (µm) |
5.6
| −9.1
|
Dendritic surface area (µm2) |
200
| −68 |
Average dendritic diameter (µm) | 0.0085 | −0.018
|
Average branch segment path length (µm) | −0.11
|
0.13
|
Maximum branch order (central shaft ordering) |
1.9
| −0.52 |
Average partition asymmetry |
0.0071
| −0.0065 |
Number of nodes |
22
| −7.7 |
2D convex hull Feret max., arboreal dendrites (µm) |
1.6
| 0.66 |
2D convex hull Feret min., arboreal dendrites (µm) |
1.3
|
0.83
|
2D convex hull Feret max., lobular dendrites (µm) |
1.2
|
1.9
|
2D convex hull Feret min., lobular dendrites (µm) | 0.54 |
0.92
|
3D convex hull volume, dendritic tree (µm3) |
2400
|
2000
|
Euclidean distance from soma (mean) (µm) | 0.063 | 0.26 |
Euclidean distance from soma (maximum) (µm) | 0.29 |
1.0
|
Contraction | −0.0026
| 0.0014 |
Fractal dimension | 0.0008 | −0.0015 |
Regression coefficients of excluded metrics | ||
Soma volume (µm3) | −5.9 |
40
|
Dendritic length (µm) |
97
| −4.6 |
Dendritic volume (µm3) |
32
| −11 |
Maximum branch order (centrifugal ordering) |
2.0
| −1.0 |
Number of nodes in S4 |
9.2
| 1.0 |
Number of nodes in S5 |
6.7
| −7.0 |
Number of nodes in IPL |
20
| −6.1 |
Number of endings |
22
| −6.7 |
2D convex hull area, arboreal dendrites (µm2) |
71
| 33 |
2D convex hull area, lobular dendrites (µm2) | 24 |
40
|
3D convex hull surface area, dendritic tree (µm2) |
260
| 250 |