Introduction
Materials and methods
Cell culture and maintenance
Measurement of sTNF-α and sTNFR1 in cell-culture media
Clonogenic assays
Immunoblotting analysis
Quantification of TNFR1 and TNF-α transcript levels by RTqPCR
Measurement of NF-κB activity
Identification of changes in gene expression associated with the acquisition of docetaxel resistance
Identification of differences in gene expression associated with docetaxel resistance
Network-based analysis of gene expression
Confirmation of microarray-based changes in gene expression by reverse transcription quantitative polymerase chain reaction
Gene | Forward primer | Reverse primer |
---|---|---|
S28
| 5'TCC ATC ATC CGC AAT GTA AAG-3' | 5'-GCT TCT CGC TCT GAC TCC AAA-3' |
TNFAIP3
| 5'-GAC CAT GGC ACA ACT CAT CTC A-3' | 5'-GTT AGC TTC ATC CAA CTT TGC GGC ATT G-3' |
TNFSF10
| 5'-CGT GTA CTT TAC CAA CGA GCT GA-3' | 5'-ACG GAG TTG CCA CTT GAC TTG-3' |
TNFSF13
| 5'-ACT CTC AGT TGC CCT CTG GTT G-3' | 5'-GGA ACT CTG CTC CGG GAG ACT C-3' |
TNFSF14
| 5'-TTT GCT CCA CAG TTG GCC TAA TC-3' | 5'-CAA TGA CTG TGG CCT CAC CTT C-3' |
TLR1
| 5'-GGT ACC AGG CCC TCT TCC TCG TTA G-3' | 5'-TAG GAA CGT GGA TGA GAC CG TTT TT-3' |
TLR6
| 5'-GCA AAA ACC CTT CAC CTT GTT TTT C-3' | 5'-CCA AGT CGT TTC TAT GTG GTT GAG G-3' |
BIRC3
| 5'-TGT TGG GAA TCT GGA GAT GA-3' | 5'-CGG ATG AAC TCC TGT CCT TT-3' |
TNFR1
| 5'-ACT GCC TCA GCT GCT CCA AAT-3' | 5'-CCG GTC CAC TGT GCA AGA A-3' |
TNFα
| 5'-TCT TCT CGA ACC CCG AGT GA-3' | 5'-GGA GCT GCC CCT CAG CTT-3' |
Results
Docetaxel increases sTNF-α production in MCF-7CC and A2780 cells
Selection of MCF-7 cells in increasing concentrations of docetaxel results in acquisition of progressive docetaxel resistance above a threshold dose
Effects of docetaxel on sTNFα in MCF-7CC and MCF-7TXT cell lines
MCF-7TXT and MCF-7TAX-1 cells are resistant to TNF-α-induced cytotoxicity
TNFR1 protein levels (but not transcript levels) are reduced on acquisition of docetaxel resistance in MCF-7 cells
Induction of docetaxel resistance in MCF-7 cells through application of a TNFR1 neutralizing antibody
Activation of NF-κB on acquisition of docetaxel resistance
Promotion of TNF-α cytotoxicity in MCF-7TXT10 cells by cycloheximide or a TNFR2 neutralizing antibody
Network-based analysis of genes associated with the acquisition of docetaxel resistance
Confirmation of changes in the expression of TNF-α-dependent genes by RTqPCR
Discussion
Gene | Direction and magnitude of change in expressiona | Role of gene product | Refs. |
---|---|---|---|
Changes in the expression of TNFα- or NF-κB-related genes in MCF-7TXT10 cells relative to MCF-7CC10 cells | |||
TNF
| Increased 12.6, 1.43 | Binds to TNFR1 to promote cell death and to TNFR2 to stimulate expression of NF-κB-dependent survival genes | |
TNFSF10
| Increased 6.88 | TNF-like ligand that binds to DcR2 to activate NF-κB-dependent survival genes; also called TRAIL | [56] |
TNFRSF19
| Increased 16.5, 1.64 | Member of the TNF-receptor family that binds to lymphotoxin alpha, activates NF-κB-mediated transcription | [57] |
TNFRSF14
| Increased, 4.24 | TNF-receptor family member, interacts with members of the TNFR-associated factor (TRAF) family and activates NF-κB and AP-1 | [58] |
TNFSF13
| Increased, 3.07 | Binds to TNFRSF13B to promote NF-κB activation; also called APRIL | [59] |
BIRC3
| Increased, 52.2 | Member of a family of proteins that inhibits apoptosis by binding to TNFR-associated factors TRAF1 and TRAF2 | [60] |
TLR2
| Increased, 5.19 | Stimulates NF-κB activation | [61] |
TRIM38
| Increased, 4.22, 7.28 | Removes Lys63-linked ubiquitin chains from TRAF2 and TRAF6, negatively regulating NF-κB activity | [62] |
TNFRSF6B
| Decreased, -2.02 | Member of the TNF-receptor superfamily, which, on binding of TNF, inhibits cell proliferation and induces apoptosis | [63] |
TRAF3IP2
| Decreased, -2.14 | Associates with and activates I-κB kinase, leading to the liberation of NF-κB from its complex with I-κB | [64] |
Changes in the expression of TNFα- or NF-κB-related genes in A2780
DXL
cells relative to A2780 cells (MTD)
| |||
TNFSF13
| Increased, 2.10 | Binds to TNFRSF13B to promote NF-κB activation; also called APRIL | [59] |
TNFRSF11B
| Increased, 2.01 | Decoy receptor for the TNF-related apoptosis-inducing ligand TRAIL; confers resistance to TNF- and TRAIL-induced apoptosis | [65] |
CARD14
| Increased, 2.19, 1.31 | Associates with guanylate kinase members that interact with BCL10 and activate NF-κB | [66] |
IRAK4
| Increased, 3.70, 3.86 | Required for the optimal transduction of IL-1-induced signals, including the activation of IRAK-1, NF-κB, and JNK | [67] |
TLR1
| Increased, 2.79 | Acts via MYD88 and TRAF6 to stimulate NF-κB activation, cytokine secretion, and the inflammatory response | [68] |
TLR6
| Increased, 2.26, 1.57 | Also acts via MYD88 and TRAF6 to stimulate NF-κB activation, cytokine secretion, and the inflammatory response | [68] |
BIRC3
| Increased, 8.83 | Member of a family of proteins that inhibits apoptosis by binding to TNFR-associated factors TRAF1 and TRAF2 | [60] |
RFFL
| Increased, 2.15, 2.13 | Endosome-associated ubiquitin ligase for RIP and regulates TNF-induced NF-κB activation | [69] |
TRAF3IP2
| Increased, 2.16 | Associates with and activates I-κB kinase, leading to the liberation of NF-κB from its complex with I-κB | [64] |
SMPD3
| Decreased, -1.59, -2.03 | Translocates to the plasma membrane in response to TNF-α in a time- and dose-dependent manner | [70] |
SOX9
| Decreased, -30.8 | Protein whose expression and activity is negatively regulated by TNF-dependent NF-κB activation | [71] |
Changes in the expression of TNFα- or NF-κB-related genes in docetaxel-resistant MB-231 cells relative to A2780 cells
| |||
CAST
| Increased, 2.44 | Inhibits degradation of NF-κB to prolong NF-κB activation | [72] |
BCL10
| Increased, 3.48 | Potent activator of NF-κB activity | [73] |
RPS6KA3
| Increased, 5.95 | Phosphorylates I-κB and activates NF-κB in response to TNF | [74] |
MAP2K5
| Increased, 3.54 | A survival protein highly expressed in MCF-7 breast tumor cells resistant to etoposide and TNF-α | [75] |
MKNK2
| Increased, 1.76 | Promotes TNF-α biosynthesis at the posttranscriptional levels | [76] [75] |
TNFRSF10B
| Decreased, -1.67 | Also known as TRAIL receptor 2; stimulates apoptosis via FADD | [77] |
FADD
| Decreased, -2.00 | A component of the caspase 8-activating complex induced by TNF-α binding to TNFR1 | [78] |
CRADD
| Decreased, -2.43 | An adaptor protein that promotes TNFα-induced apoptosis through interaction with the TNFR1-interacting protein RIP | [79] |
TRAF1
| Decreased, -2.39 | Negatively regulates the ability of TNFR2 to promote cell proliferation and NF-κB activation in T cells | [80] |
MKNK1
| Decreased, -2.00 | Promotes TNF-α-mediated mRNA degradation | [81] |