Background
Study subjects and methods
Patients and controls
Variables | CAD patients (n = 200) | Controls (n = 100) | P value |
---|---|---|---|
Age (years) (mean ± SD) | 62.21 ± 9.48 | 57.74 ± 10.5 | 0.272a |
Gender (M/F) (%) | 124 (62)/76 (38) | 55 (55)/45 (45) | 0.184b |
Smokers (%)* | 76 (38) | 14 (14) | 0.070b |
Systolic BP (mmHg) (mean ± SD) | 142.4 ± 16.91 | 119.3 ± 9.58 | 0.000a |
Diastolic BP (mmHg) (mean ± SD) | 88.7 ± 14.7 | 79.1 ± 11.1 | 0.090a |
BMI (kg/cm2) (mean ± SD) | 48.02 ± 4.12 | 27.06 ± 3.60 | 0.041a |
FBS (mg/dl) (mean ± SD) | 119.90 ± 43.44 | 95.14 ± 8.85 | 0.000a |
Total Cholesterol (mg/dl) (mean ± SD) | 295.39 ± 40.80 | 174.65 ± 27.16 | < 0.001a |
TG (mg/dl) (mean ± SD) | 176.66 ± 90.84 | 122.91 ± 33.81 | < 0.001a |
HDL (mg/dl) (mean ± SD) | 38.83 ± 9.90 | 57.15 ± 12.32 | 0.000a |
LDL (mg/dl) (mean ± SD) | 201.43 ± 24.91 | 88.88 ± 27.78 | < 0.001a |
Genotyping of HPA polymorphisms by PCR-SSP
Primers | Sequences | Annealing temperature (°C) | Primer mixes and concentrations | Amplicon size (bp) |
---|---|---|---|---|
HPA-1a HPA-1b common | 5ʹ-ACTTACAGGCCCTGCCTCT-3ʹ 5ʹ-ACTTACAGGCCCTGCCTCC-3ʹ 5ʹ-AGCCGGAGTGCAATCCTCTG-3ʹ | 62 64 66 | HPA-1a + common, 0.5 µM HPA-1b + common, 0.5 µM | 196 |
HPA-2a HPA-2b common | 5ʹ-CCCCCAGGGCTCCTGAC-3ʹ 5ʹ-GCCCCCAGGGCTCCTGAT-3ʹ 5ʹ-GCCAGCGACGAAAATAGAGG-3ʹ | 64 62 62 | HPA-2a + common, 0.5 µM HPA-2b + common, 0.5 µM | 241 |
HPA-3a HPA-3b common | 5ʹ-GGGGGAGGGGCTGGGGA-3ʹ 5ʹ-GGGGGAGGGGCTGGGGC-3ʹ 5ʹ-GACCTGCTCTACATCCTGGA-3ʹ | 64 66 60 | HPA-3a + common, 0.5 µM HPA-3b + common, 0.5 µM | 230 |
HPA-4a HPA-4b common | 5ʹ-GCTGGCCACCCAGATGCG-3ʹ 5ʹ-AGCTGGCCACCCAGATGCA-3ʹ 5ʹ-GCTGTCCTGGCGTCTGGAG-3ʹ | 62 60 62 | HPA-4a + common, 0.5 µM HPA-4b + common, 0.5 µM | 158 |
HPA-5a HPA-5b common | 5ʹ-AGTCTACCTGTTTACTATCAAAG -3ʹ 5ʹ-AGTCTACCTGTTTACTATCAAAA -3ʹ 5ʹ-CTCTCATGGAAAATGGCAGTA-3ʹ | 62 60 62 | HPA-5a + common, 2 µM HPA-5b + common, 2 µM | 249 |
HPA-6a HPA-6b common | 5ʹ-GACGAGTGCAGCCCCCG-3ʹ 5ʹ-GGACGAGTGCAGCCCCCA-3ʹ 5ʹ-TAGCGGACACAGGAGAAGTC-3ʹ | 60 62 62 | HPA-6a + common, 0.5 µM HPA-6b + common, 0.5 µM | 163 |
HPA-9a HPA-9b common | 5ʹ-GGGCAGCCCCCAGTCCAC-3ʹ 5ʹ-GGGCAGCCCCCAGTCCAT-3ʹ 5ʹ-GACCTGCTCTACATCCTGGA-3ʹ | 64 62 62 | HPA-9a + common, 0.5 µM HPA-9b + common, 0.5 µM | 212 |
HPA-15a HPA-15b common | 5ʹ-TTCAAATTCTTGGTAAATCCTGT -3ʹ 5ʹ-TTCAAATTCTTGGTAAATCCTGG -3ʹ 5ʹ-ATGACCTTATGATGACCTATTC-3ʹ | 60 62 60 | HPA-15a + common, 2 µM HPA-15b + common, 2 µM | 225 |
HGH-F HGH-R | 5ʹ-GCCTTCCCAACCATTCCCTTA-3ʹ 5ʹ-TCACGGATTTCTGTTGTGTTTC-3ʹ | 64 62 | HGH (F + R), 0.2 µM | 429 |
DRα-F DRα-R | 5ʹ-GAGGTAACTGTGCTCACGAACAGC-3ʹ 5ʹ-CACGTTCTCTGTAGTCTCTGGG-3ʹ | 74 68 | DRα (F + R), 0.2 µM for HPA-5 DRα (F + R), 0.1 µM for HPA-15 | 607 |
Statistical analysis
Results
Frequency of the allele and genotypes of the HPA polymorphisms
dbSNP | Alleles/genotypes | CAD (n = 200) N (%) | Control (n = 100) N (%) | χ2 | P value | OR (95% CI) |
---|---|---|---|---|---|---|
HPA1 | T (a) | 363 (90.7) | 178 (89) | 0.460 | 0.497 | 1.212 (0.69–2.11) |
C (b) | 37 (9.3) | 22 (11) | – | – | 0.824 (0.47–1.43) | |
TT (aa) | 163 (81.5) | 79 (78) | 0.516 | 0.472 | 1.242 (0.68–2.24) | |
CT (ab) | 37 (18.5) | 22 (22) | – | – | 0.804 (0.44–1.45) | |
CC (bb) | 0 (0) | 0 (0) | – | – | – | |
HWE | P = 0.216 | |||||
HPA2 | C (a) | 350 (87.5) | 178 (89) | 0.284 | 0.594 | 0.865 (0.50–1.47) |
T (b) | 50 (12.5) | 22 (11) | – | – | 1.155 (0.67–1.96) | |
CC (aa) | 153(76.5) | 79 (79) | 0.303 | 0.859 | 0.865 (0.48–1.54) | |
CT (ab) | 44 (22) | 20 (20) | – | – | 1.128 (0.62–2.04) | |
TT (bb) | 3 (1.5) | 1 (1) | – | – | 1.507 (0.15–14.68) | |
HWE | P = 0.830 | |||||
HPA3 | T (a) | 235 (58.8) | 118 (59) | 0.003 | 0.953 | 0.989 (0.70–1.39) |
G (b) | 165 (41.2) | 82 (41) | – | – | 1.010 (0.71–1.42) | |
TT (aa) | 74 (37) | 38 (38) | 0.061 | 0.969 | 0.958 (0.58–1.57) | |
GT (ab) | 87 (43.5) | 42 (42) | – | – | 1.063 (0.65–1.72) | |
GG (bb) | 39 (19.5) | 20 (20) | – | – | 0.968 (0.53–1.76) | |
HWE | P = 0.187 | |||||
HPA4 | G (a) | 400 (100) | 200 (100) | – | – | – |
A (b) | 0 (0) | 0 (0) | – | – | – | |
GG (aa) | 200 (100) | 100 | – | – | – | |
GA (ab) | 0 (0) | 0 | – | – | – | |
AA (bb) | 0 (0) | 0 | – | – | – | |
HWE | P = 0 | |||||
HPA5 | G (a) | 363 (90.7) | 183 (91.5) | 0.091 | 0.762 | 0.911 (0.49–1.66) |
A (b) | 37 (9.2) | 17 (8.5) | – | – | 1.097 (0.60–2.00) | |
GG (aa) | 167 (83.5) | 85 (85) | 0.125 | 0.939 | 0.893 (0.45–1.73) | |
AG (ab) | 29 (14.5) | 13 (13) | – | – | 1.135 (0.56–2.29) | |
AA (bb) | 4 (2) | 2 (2) | – | – | 0.951 (0.17–5.28) | |
HWE | P = 0.1 | |||||
HPA6 | G (a) | 400 (100) | 200 (100) | – | – | – |
A (b) | 0 (0) | 0 (0) | – | – | – | |
GG (aa) | 200 (100) | 100 | – | – | – | |
GA (ab) | 0 (0) | 0 | – | – | – | |
AA (bb) | 0 (0) | 0 | – | – | – | |
HWE | P = 0 | |||||
HPA9 | G (a) | 400 (100) | 200 (100) | – | – | – |
A (b) | 0 (0) | 0 (0) | – | – | – | |
GG (aa) | 200 (100) | 100 | – | – | – | |
GA (ab) | 0 (0) | 0 | – | – | – | |
AA (bb) | 0 (0) | 0 | – | – | – | |
HWE | P = 0 | |||||
HPA15 | C (a) | 188 (47) | 88 (44) | 0.483 | 0.487 | 1.128 (0.80–1.58) |
A (b) | 212 (53) | 112 (56) | – | – | 0.886 (0.62–1.24) | |
CC (aa) | 43 (21.5) | 21 (21) | 1.033 | 0.596 | 1.030 (0.57–1.85) | |
AC (ab) | 102 (51) | 46 (46) | – | – | 1.221 (0.75–1.97) | |
AA (bb) | 55 (27.5) | 33 (33) | – | – | 0.770 (0.45–1.29) | |
HWE | P = 0.505 |
Haplotype frequencies
Haplotypesa | Frequencies | Association test | ||||||
---|---|---|---|---|---|---|---|---|
HPA1 | HPA2 | HPA3 | Hap.freq CAD (freq) | Hap.freq Controls (freq) | χ2 | P valueb | Pcc | OR (95% CI)* |
a | a | a | 193 (0.482) | 87 (0.437) | 0.947 | 0.330597 | 0.910024 | 1.186 (0.84–1.67) |
a | a | b | 125 (0.313) | 73 (0.363) | 1.672 | 0.196024 | 0.729941 | 0.789 (0.55–1.13) |
a | b | a | 23 (0.058) | 12 (0.059) | 0.007 | 0.931565 | 1 | 0.969 (0.47–1.99) |
a | b | b | 22 (0.054) | 6 (0.031) | 1.639 | 0.200514 | 0.738865 | 1.804 (0.72–4.50) |
b | a | a | 17 (0.042) | 15 (0.073) | 2.743 | 0.097746 | 0.460523 | 0.547 (0.26–1.12) |
b | a | b | 15 (0.037) | 3 (0.016) | 2.023 | 0.155039 | 0.636068 | 2.357 (0.69–7.95) |
b | b | a | 2 (0.006) | 4 (0.020) | – | – | – | |
b | b | b | 3 (0.008) | 0 (0.000) | – | – | – |
Regression analysis
Univariate regression | Multivariate regression | |||||
---|---|---|---|---|---|---|
Z-score | P value | OR (95% CI) | Z-score | P value | OR (95% CI)a | |
1a/2a/3a | – | – | 1.00 | – | – | 1.00 |
1a/2a/3b | − 1.321 | 0.186 | 0.772 (0.53–1.13) | − 0.750 | 0.454 | 0.838 (0.53–1.33) |
1a/2b/3a | − 0.385 | 0.700 | 0.864 (0.41–1.81) | − 0.769 | 0.442 | 0.698 (0.28–1.75) |
1a/2b/3b | 1.052 | 0.293 | 1.653 (0.65–4.22) | 0.118 | 0.905 | 1.075 (0.33–3.54) |
1b/2a/3a | − 1.782 | 0.075 | 0.511 (0.24–1.07) | − 0.943 | 0.345 | 0.645 (0.26–1.60) |
1b/2a/3b | 1.259 | 0.208 | 2.254 (0.64–4.99) | 2.436 | 0.015 | 2.792 (1.46–8.60) |
BMI (kg/cm2) | – | – | – | 0.251 | 0.094 | 1.058 (0.98–1.08) |
Sys.BP (mmHg) | – | – | – | 2.333 | 0.013 | 1.021 (1.00–1.04) |
FBS (mg/dl) | – | – | – | 3.571 | 0.000 | 1.040 (1.03–1.05) |
Total.Chol(mg/dl) | – | – | – | 3.306 | 0.000 | 2.008 (1.00–2.02) |
LDL (mg/dl) | – | – | – | − 4.633 | 0.001 | 1.967 (0.96–1.98) |
TG (mg/dl) | – | – | – | 2.817 | 0.000 | 1.017 (1.01–1.02) |