Skip to main content
Erschienen in: Archives of Virology 10/2018

30.06.2018 | Brief Report

Clinical evaluation of a panel of multiplex quantitative real-time reverse transcription polymerase chain reaction assays for the detection of 16 respiratory viruses associated with community-acquired pneumonia

verfasst von: Dan Zhang, Haiyan Mao, Xiuyu Lou, Junhang Pan, Hao Yan, Hongfeng Tang, Yan Shu, Yun Zhao, Xiaoli Cheng, Hong Tao, Yanjun Zhang, Xuejun Ma

Erschienen in: Archives of Virology | Ausgabe 10/2018

Einloggen, um Zugang zu erhalten

Abstract

We developed a panel of multiplex quantitative real-time reverse transcription polymerase chain reaction (mqRT-PCR) assay consisting of seven internally controlled qRT-PCR assays to detect 16 different respiratory viruses. We compared the new mqRT-PCR with a previously reported two-tube mRT-PCR assay using 363 clinical sputum specimens. The mqRT-PCR assay performed comparably with the two-tube assay for most viruses, offering the advantages of quantitative analysis, easier performance, lower susceptibility to contamination, and shorter turnaround time in laboratories equipped with conventional real-time PCR instrumentation, and it could therefore be a valuable tool for routine surveillance of respiratory virus infections in China.
Literatur
1.
Zurück zum Zitat Collaborators GL (2017) Estimates of the global, regional, and national morbidity, mortality, and aetiologies of lower respiratory tract infections in 195 countries: a systematic analysis for the Global Burden of Disease Study 2015. Lancet Infect Dis 17(11):1133–1161CrossRef Collaborators GL (2017) Estimates of the global, regional, and national morbidity, mortality, and aetiologies of lower respiratory tract infections in 195 countries: a systematic analysis for the Global Burden of Disease Study 2015. Lancet Infect Dis 17(11):1133–1161CrossRef
2.
Zurück zum Zitat Nair H, Nokes DJ, Gessner BD, Dherani M, Madhi SA, Singleton RJ, O’Brien KL, Roca A, Wright PF, Bruce N, Chandran A, Theodoratou E, Sutanto A, Sedyaningsih ER, Sedyaningsih ER, Ngama M, Munywoki PK, Kartasasmita C, Simoes EA, Rudan I, Weber MW, Campbell H (2010) Global burden of acute lower respiratory infections due to respiratory syncytial virus in young children: a systematic review and meta-analysis. Lancet (London, England) 375(9725):1545–1555. https://doi.org/10.1016/s0140-6736(10)60206-1 CrossRef Nair H, Nokes DJ, Gessner BD, Dherani M, Madhi SA, Singleton RJ, O’Brien KL, Roca A, Wright PF, Bruce N, Chandran A, Theodoratou E, Sutanto A, Sedyaningsih ER, Sedyaningsih ER, Ngama M, Munywoki PK, Kartasasmita C, Simoes EA, Rudan I, Weber MW, Campbell H (2010) Global burden of acute lower respiratory infections due to respiratory syncytial virus in young children: a systematic review and meta-analysis. Lancet (London, England) 375(9725):1545–1555. https://​doi.​org/​10.​1016/​s0140-6736(10)60206-1 CrossRef
3.
Zurück zum Zitat Walker C, Rudan I, Liu L, Nair H, Theodoratou E, Bhutta Z, O’Brien K, Campbell H, Black R (2013) Global burden of childhood pneumonia and diarrhoea. Lancet 381(9875):1405–1416CrossRefPubMed Walker C, Rudan I, Liu L, Nair H, Theodoratou E, Bhutta Z, O’Brien K, Campbell H, Black R (2013) Global burden of childhood pneumonia and diarrhoea. Lancet 381(9875):1405–1416CrossRefPubMed
4.
Zurück zum Zitat He C, Kang L, Miao L, Li Q, Liang J, Li X, Wang Y, Zhu J (2015) Pneumonia mortality among Children under 5 in China from 1996 to 2013: an Analysis from National Surveillance System. PLoS One 10(7):e0133620CrossRefPubMedPubMedCentral He C, Kang L, Miao L, Li Q, Liang J, Li X, Wang Y, Zhu J (2015) Pneumonia mortality among Children under 5 in China from 1996 to 2013: an Analysis from National Surveillance System. PLoS One 10(7):e0133620CrossRefPubMedPubMedCentral
6.
Zurück zum Zitat Song P, Theodoratou E, Li X, Liu L, Chu Y, Black R, Campbell H, Rudan I, Chan K (2016) Causes of death in children younger than five years in China in 2015: an updated analysis. J Global Health 6(2):020802CrossRef Song P, Theodoratou E, Li X, Liu L, Chu Y, Black R, Campbell H, Rudan I, Chan K (2016) Causes of death in children younger than five years in China in 2015: an updated analysis. J Global Health 6(2):020802CrossRef
7.
Zurück zum Zitat Jain S, Williams DJ, Arnold SR, Ampofo K, Bramley AM, Reed C, Stockmann C, Anderson EJ, Grijalva CG, Self WH, Zhu Y, Patel A, Hymas W, Chappell JD, Kaufman RA, Kan JH, Dansie D, Lenny N, Hillyard DR, Haynes LM, Levine M, Lindstrom S, Winchell JM, Katz JM, Erdman D, Schneider E, Hicks LA, Wunderink RG, Edwards KM, Pavia AT, McCullers JA, Finelli L (2015) Community-acquired pneumonia requiring hospitalization among U.S. children. N Engl J Med 372(9):835–845. https://doi.org/10.1056/nejmoa1405870 CrossRefPubMedPubMedCentral Jain S, Williams DJ, Arnold SR, Ampofo K, Bramley AM, Reed C, Stockmann C, Anderson EJ, Grijalva CG, Self WH, Zhu Y, Patel A, Hymas W, Chappell JD, Kaufman RA, Kan JH, Dansie D, Lenny N, Hillyard DR, Haynes LM, Levine M, Lindstrom S, Winchell JM, Katz JM, Erdman D, Schneider E, Hicks LA, Wunderink RG, Edwards KM, Pavia AT, McCullers JA, Finelli L (2015) Community-acquired pneumonia requiring hospitalization among U.S. children. N Engl J Med 372(9):835–845. https://​doi.​org/​10.​1056/​nejmoa1405870 CrossRefPubMedPubMedCentral
8.
Zurück zum Zitat Babady N, England M, Jurcic Smith K, He T, Wijetunge D, Tang Y, Chamberland R, Menegus M, Swierkosz E, Jerris R, Greene W (2017) Multicenter evaluation of the ePlex® respiratory pathogen panel for the detection of viral and bacterial respiratory tract pathogens in nasopharyngeal swabs. J Clin Microbiol 56(2):e01658-17. https://doi.org/10.1128/JCM.01658-17 CrossRef Babady N, England M, Jurcic Smith K, He T, Wijetunge D, Tang Y, Chamberland R, Menegus M, Swierkosz E, Jerris R, Greene W (2017) Multicenter evaluation of the ePlex® respiratory pathogen panel for the detection of viral and bacterial respiratory tract pathogens in nasopharyngeal swabs. J Clin Microbiol 56(2):e01658-17. https://​doi.​org/​10.​1128/​JCM.​01658-17 CrossRef
10.
Zurück zum Zitat Hayden R, Gu Z, Rodriguez A, Tanioka L, Ying C, Morgenstern M, Bankowski M (2012) Comparison of two broadly multiplexed PCR systems for viral detection in clinical respiratory tract specimens from immunocompromised children. J Clin Virol 53(4):308–313CrossRefPubMed Hayden R, Gu Z, Rodriguez A, Tanioka L, Ying C, Morgenstern M, Bankowski M (2012) Comparison of two broadly multiplexed PCR systems for viral detection in clinical respiratory tract specimens from immunocompromised children. J Clin Virol 53(4):308–313CrossRefPubMed
15.
Zurück zum Zitat Li Z, Liu M, Zhang L, Zhang W, Gao G, Zhu Z, Wei L, Fan Q, Long M (2009) Detection of intergenic non-coding RNAs expressed in the main developmental stages in Drosophila melanogaster. Nucleic Acids Res 37(13):4308–4314CrossRefPubMedPubMedCentral Li Z, Liu M, Zhang L, Zhang W, Gao G, Zhu Z, Wei L, Fan Q, Long M (2009) Detection of intergenic non-coding RNAs expressed in the main developmental stages in Drosophila melanogaster. Nucleic Acids Res 37(13):4308–4314CrossRefPubMedPubMedCentral
17.
Zurück zum Zitat Raymond F, Carbonneau J, Boucher N, Robitaille L, Boisvert S, Wu W, De Serres G, Boivin G, Corbeil J (2009) Comparison of automated microarray detection with real-time PCR assays for detection of respiratory viruses in specimens obtained from children. J Clin Microbiol 47(3):743–750CrossRefPubMedPubMedCentral Raymond F, Carbonneau J, Boucher N, Robitaille L, Boisvert S, Wu W, De Serres G, Boivin G, Corbeil J (2009) Comparison of automated microarray detection with real-time PCR assays for detection of respiratory viruses in specimens obtained from children. J Clin Microbiol 47(3):743–750CrossRefPubMedPubMedCentral
19.
Zurück zum Zitat Wang Z, Malanoski A, Lin B, Kidd C, Long N, Blaney K, Thach D, Tibbetts C, Stenger D (2008) Resequencing microarray probe design for typing genetically diverse viruses: human rhinoviruses and enteroviruses. BMC Genom 9:577CrossRef Wang Z, Malanoski A, Lin B, Kidd C, Long N, Blaney K, Thach D, Tibbetts C, Stenger D (2008) Resequencing microarray probe design for typing genetically diverse viruses: human rhinoviruses and enteroviruses. BMC Genom 9:577CrossRef
20.
Zurück zum Zitat Wang F, Zhao L, Zhu R, Deng J, Sun Y, Ding Y, Tian R, Qian Y (2015) Parainfluenza Virus Types 1, 2, and 3 in pediatric patients with acute respiratory infections in Beijing during 2004 to 2012. Chin Med J 128(20):2726–2730CrossRefPubMedPubMedCentral Wang F, Zhao L, Zhu R, Deng J, Sun Y, Ding Y, Tian R, Qian Y (2015) Parainfluenza Virus Types 1, 2, and 3 in pediatric patients with acute respiratory infections in Beijing during 2004 to 2012. Chin Med J 128(20):2726–2730CrossRefPubMedPubMedCentral
22.
Zurück zum Zitat Fry A, Curns A, Harbour K, Hutwagner L, Holman R, Anderson L (2006) Seasonal trends of human parainfluenza viral infections: United States, 1990-2004. Clin Infect Dis 43(8):1016–1022CrossRefPubMed Fry A, Curns A, Harbour K, Hutwagner L, Holman R, Anderson L (2006) Seasonal trends of human parainfluenza viral infections: United States, 1990-2004. Clin Infect Dis 43(8):1016–1022CrossRefPubMed
23.
Zurück zum Zitat Fiore AE, Iverson C, Messmer T, Erdman D, Lett SM, Talkington DF, Anderson LJ, Fields B, Carlone GM, Breiman RF, Cetron MS (1998) Outbreak of pneumonia in a long-term care facility: antecedent human parainfluenza virus 1 infection may predispose to bacterial pneumonia. J Am Geriatr Soc 46(9):1112–1117CrossRefPubMed Fiore AE, Iverson C, Messmer T, Erdman D, Lett SM, Talkington DF, Anderson LJ, Fields B, Carlone GM, Breiman RF, Cetron MS (1998) Outbreak of pneumonia in a long-term care facility: antecedent human parainfluenza virus 1 infection may predispose to bacterial pneumonia. J Am Geriatr Soc 46(9):1112–1117CrossRefPubMed
24.
Zurück zum Zitat Zeng Z, Chen D, Tan W, Qiu S, Xu D, Liang H, Chen M, Li X, Lin Z, Liu W, Zhou R (2017) Epidemiology and clinical characteristics of human coronaviruses OC43, 229E, NL63, and HKU1: a study of hospitalized children with acute respiratory tract infection in Guangzhou, China. Eur J Clin Microbiol Infect Dis 37:363–369CrossRefPubMedPubMedCentral Zeng Z, Chen D, Tan W, Qiu S, Xu D, Liang H, Chen M, Li X, Lin Z, Liu W, Zhou R (2017) Epidemiology and clinical characteristics of human coronaviruses OC43, 229E, NL63, and HKU1: a study of hospitalized children with acute respiratory tract infection in Guangzhou, China. Eur J Clin Microbiol Infect Dis 37:363–369CrossRefPubMedPubMedCentral
25.
Zurück zum Zitat Gaunt E, Hardie A, Claas E, Simmonds P, Templeton K (2010) Epidemiology and clinical presentations of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method. J Clin Microbiol 48(8):2940–2947CrossRefPubMedPubMedCentral Gaunt E, Hardie A, Claas E, Simmonds P, Templeton K (2010) Epidemiology and clinical presentations of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method. J Clin Microbiol 48(8):2940–2947CrossRefPubMedPubMedCentral
Metadaten
Titel
Clinical evaluation of a panel of multiplex quantitative real-time reverse transcription polymerase chain reaction assays for the detection of 16 respiratory viruses associated with community-acquired pneumonia
verfasst von
Dan Zhang
Haiyan Mao
Xiuyu Lou
Junhang Pan
Hao Yan
Hongfeng Tang
Yan Shu
Yun Zhao
Xiaoli Cheng
Hong Tao
Yanjun Zhang
Xuejun Ma
Publikationsdatum
30.06.2018
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 10/2018
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-018-3921-8

Weitere Artikel der Ausgabe 10/2018

Archives of Virology 10/2018 Zur Ausgabe

Leitlinien kompakt für die Innere Medizin

Mit medbee Pocketcards sicher entscheiden.

Seit 2022 gehört die medbee GmbH zum Springer Medizin Verlag

Update Innere Medizin

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.