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Erschienen in: Neurological Sciences 8/2020

05.03.2020 | Original Article

Clinical exome sequencing in neuromuscular diseases: an experience from Turkey

verfasst von: Esra Börklü-Yücel, Çiğdem Demiriz, Şahin Avcı, Ebru Nur Vanlı-Yavuz, Serpil Eraslan, Piraye Oflazer, Hülya Kayserili

Erschienen in: Neurological Sciences | Ausgabe 8/2020

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Abstract

Neuromuscular diseases (NMDs) encompass a variety of ailments from muscular dystrophies to ataxias, in the course of which the functioning of the muscles is eventually either directly or indirectly impaired. The clinical diagnosis of a particular NMD is not always straightforward due to the clinical and genetic heterogeneity of the disorders under investigation. Traditional diagnostic tools such as electrophysiological tests and muscle biopsies are both invasive and painful methods, causing the patients to be reluctant. Next-generation sequencing, on the other hand, emerged as an alternative method for the diagnosis of NMDs, both with its minimally invasive nature and fast processing period. In this study, clinical exome sequencing (CES) was applied to a cohort of 70 probands in Turkey, 44 of whom received a final diagnosis, representing a diagnostic rate of 62.9%. Out of the 50 mutations identified to be causal, 26 were novel in the known 27 NMD genes. Two probands had complex/blended phenotypes. Molecular confirmation of clinical diagnosis of NMDs has a major prognostic impact and is crucial for the management and the possibility of alternative reproductive options. CES, which has been increasingly adopted to diagnose single-gene disorders, is also a powerful tool for revealing the etiopathogenesis in complex/blended phenotypes, as observed in two probands of the cohort.
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Literatur
4.
11.
Zurück zum Zitat Köhler S, Vasilevsky NA, Engelstad M, Foster E, McMurry J, Aymé S, Baynam G, Bello SM, Boerkoel CF, Boycott KM, Brudno M, Buske OJ, Chinnery PF, Cipriani V, Connell LE, Dawkins HJ, DeMare L, Devereau AD, de Vries BB, Firth HV, Freson K, Greene D, Hamosh A, Helbig I, Hum C, Jähn JA, James R, Krause R, F Laulederkind SJ, Lochmüller H, Lyon GJ, Ogishima S, Olry A, Ouwehand WH, Pontikos N, Rath A, Schaefer F, Scott RH, Segal M, Sergouniotis PI, Sever R, Smith CL, Straub V, Thompson R, Turner C, Turro E, Veltman MW, Vulliamy T, Yu J, von Ziegenweidt J, Zankl A, Züchner S, Zemojtel T, Jacobsen JO, Groza T, Smedley D, Mungall CJ, Haendel M, Robinson PN (2017) The human phenotype ontology in 2017. Nucleic Acids Res 45:D865–D876. https://doi.org/10.1093/nar/gkw1039 CrossRefPubMed Köhler S, Vasilevsky NA, Engelstad M, Foster E, McMurry J, Aymé S, Baynam G, Bello SM, Boerkoel CF, Boycott KM, Brudno M, Buske OJ, Chinnery PF, Cipriani V, Connell LE, Dawkins HJ, DeMare L, Devereau AD, de Vries BB, Firth HV, Freson K, Greene D, Hamosh A, Helbig I, Hum C, Jähn JA, James R, Krause R, F Laulederkind SJ, Lochmüller H, Lyon GJ, Ogishima S, Olry A, Ouwehand WH, Pontikos N, Rath A, Schaefer F, Scott RH, Segal M, Sergouniotis PI, Sever R, Smith CL, Straub V, Thompson R, Turner C, Turro E, Veltman MW, Vulliamy T, Yu J, von Ziegenweidt J, Zankl A, Züchner S, Zemojtel T, Jacobsen JO, Groza T, Smedley D, Mungall CJ, Haendel M, Robinson PN (2017) The human phenotype ontology in 2017. Nucleic Acids Res 45:D865–D876. https://​doi.​org/​10.​1093/​nar/​gkw1039 CrossRefPubMed
18.
Zurück zum Zitat Vill K, Blaschek A, Gläser D, Kuhn M, Haack T, Alhaddad B, Wagner M, Kovacs-Nagy R, Tacke M, Gerstl L, Schroeder AS, Borggraefe I, Mueller C, Schlotter-Weigel B, Schoser B, Walter MC, Müller-Felber W (2017) Early-onset myopathies: clinical findings, prevalence of subgroups and diagnostic approach in a single neuromuscular referral Center in Germany. J Neuromuscul Dis 4:315–325. https://doi.org/10.3233/JND-170231 CrossRefPubMed Vill K, Blaschek A, Gläser D, Kuhn M, Haack T, Alhaddad B, Wagner M, Kovacs-Nagy R, Tacke M, Gerstl L, Schroeder AS, Borggraefe I, Mueller C, Schlotter-Weigel B, Schoser B, Walter MC, Müller-Felber W (2017) Early-onset myopathies: clinical findings, prevalence of subgroups and diagnostic approach in a single neuromuscular referral Center in Germany. J Neuromuscul Dis 4:315–325. https://​doi.​org/​10.​3233/​JND-170231 CrossRefPubMed
21.
Zurück zum Zitat Trujillano D, Bertoli-Avella AM, Kumar Kandaswamy K, Weiss ME, Köster J, Marais A, Paknia O, Schröder R, Garcia-Aznar JM, Werber M, Brandau O, Calvo del Castillo M, Baldi C, Wessel K, Kishore S, Nahavandi N, Eyaid W, al Rifai MT, al-Rumayyan A, al-Twaijri W, Alothaim A, Alhashem A, al-Sannaa N, al-Balwi M, Alfadhel M, Rolfs A, Abou Jamra R (2017) Clinical exome sequencing: results from 2819 samples reflecting 1000 families. Eur J Hum Genet 25:176–182. https://doi.org/10.1038/ejhg.2016.146 CrossRefPubMed Trujillano D, Bertoli-Avella AM, Kumar Kandaswamy K, Weiss ME, Köster J, Marais A, Paknia O, Schröder R, Garcia-Aznar JM, Werber M, Brandau O, Calvo del Castillo M, Baldi C, Wessel K, Kishore S, Nahavandi N, Eyaid W, al Rifai MT, al-Rumayyan A, al-Twaijri W, Alothaim A, Alhashem A, al-Sannaa N, al-Balwi M, Alfadhel M, Rolfs A, Abou Jamra R (2017) Clinical exome sequencing: results from 2819 samples reflecting 1000 families. Eur J Hum Genet 25:176–182. https://​doi.​org/​10.​1038/​ejhg.​2016.​146 CrossRefPubMed
23.
Zurück zum Zitat Fattahi Z, Kalhor Z, Fadaee M, Vazehan R, Parsimehr E, Abolhassani A, Beheshtian M, Zamani G, Nafissi S, Nilipour Y, Akbari MR, Kahrizi K, Kariminejad A, Najmabadi H (2017) Improved diagnostic yield of neuromuscular disorders applying clinical exome sequencing in patients arising from a consanguineous population. Clin Genet 91:386–402. https://doi.org/10.1111/cge.12810 CrossRefPubMed Fattahi Z, Kalhor Z, Fadaee M, Vazehan R, Parsimehr E, Abolhassani A, Beheshtian M, Zamani G, Nafissi S, Nilipour Y, Akbari MR, Kahrizi K, Kariminejad A, Najmabadi H (2017) Improved diagnostic yield of neuromuscular disorders applying clinical exome sequencing in patients arising from a consanguineous population. Clin Genet 91:386–402. https://​doi.​org/​10.​1111/​cge.​12810 CrossRefPubMed
26.
Zurück zum Zitat Yiş U, Diniz G, Hazan F et al (2018) Childhood onset limb-girdle muscular dystrophies in the Aegean part of Turkey. Acta Myol 37:210–220PubMedPubMedCentral Yiş U, Diniz G, Hazan F et al (2018) Childhood onset limb-girdle muscular dystrophies in the Aegean part of Turkey. Acta Myol 37:210–220PubMedPubMedCentral
27.
Zurück zum Zitat Sawyer SL, Schwartzentruber J, Beaulieu CL, Dyment D, Smith A, Warman Chardon J, Yoon G, Rouleau GA, Suchowersky O, Siu V, Murphy L, Hegele RA, Marshall CR, FORGE Canada Consortium, Bulman DE, Majewski J, Tarnopolsky M, Boycott KM (2014) Exome sequencing as a diagnostic tool for pediatric-onset Ataxia. Hum Mutat 35:45–49. https://doi.org/10.1002/humu.22451 CrossRefPubMed Sawyer SL, Schwartzentruber J, Beaulieu CL, Dyment D, Smith A, Warman Chardon J, Yoon G, Rouleau GA, Suchowersky O, Siu V, Murphy L, Hegele RA, Marshall CR, FORGE Canada Consortium, Bulman DE, Majewski J, Tarnopolsky M, Boycott KM (2014) Exome sequencing as a diagnostic tool for pediatric-onset Ataxia. Hum Mutat 35:45–49. https://​doi.​org/​10.​1002/​humu.​22451 CrossRefPubMed
29.
Zurück zum Zitat Ghaoui R, Cooper ST, Lek M, Jones K, Corbett A, Reddel SW, Needham M, Liang C, Waddell LB, Nicholson G, O'Grady G, Kaur S, Ong R, Davis M, Sue CM, Laing NG, North KN, MacArthur D, Clarke NF (2015) Use of whole-exome sequencing for diagnosis of limb-girdle muscular dystrophy: outcomes and lessons learned. JAMA Neurol 72:1424–1432. https://doi.org/10.1001/jamaneurol.2015.2274 CrossRefPubMed Ghaoui R, Cooper ST, Lek M, Jones K, Corbett A, Reddel SW, Needham M, Liang C, Waddell LB, Nicholson G, O'Grady G, Kaur S, Ong R, Davis M, Sue CM, Laing NG, North KN, MacArthur D, Clarke NF (2015) Use of whole-exome sequencing for diagnosis of limb-girdle muscular dystrophy: outcomes and lessons learned. JAMA Neurol 72:1424–1432. https://​doi.​org/​10.​1001/​jamaneurol.​2015.​2274 CrossRefPubMed
30.
Zurück zum Zitat Todd EJ, Yau KS, Ong R, Slee J, McGillivray G, Barnett CP, Haliloglu G, Talim B, Akcoren Z, Kariminejad A, Cairns A, Clarke NF, Freckmann ML, Romero NB, Williams D, Sewry CA, Colley A, Ryan MM, Kiraly-Borri C, Sivadorai P, Allcock RJN, Beeson D, Maxwell S, Davis MR, Laing NG, Ravenscroft G (2015) Next generation sequencing in a large cohort of patients presenting with neuromuscular disease before or at birth. Orphanet J Rare Dis 10:1–14. https://doi.org/10.1186/s13023-015-0364-0 CrossRef Todd EJ, Yau KS, Ong R, Slee J, McGillivray G, Barnett CP, Haliloglu G, Talim B, Akcoren Z, Kariminejad A, Cairns A, Clarke NF, Freckmann ML, Romero NB, Williams D, Sewry CA, Colley A, Ryan MM, Kiraly-Borri C, Sivadorai P, Allcock RJN, Beeson D, Maxwell S, Davis MR, Laing NG, Ravenscroft G (2015) Next generation sequencing in a large cohort of patients presenting with neuromuscular disease before or at birth. Orphanet J Rare Dis 10:1–14. https://​doi.​org/​10.​1186/​s13023-015-0364-0 CrossRef
32.
34.
Zurück zum Zitat Lynch PJ, Tong J, Lehane M, Mallet A, Giblin L, Heffron JJ, Vaughan P, Zafra G, MacLennan D, McCarthy T (1999) A mutation in the transmembrane/luminal domain of the ryanodine receptor is associated with abnormal Ca2+ release channel function and severe central core disease. Proc Natl Acad Sci U S A 96:4164–4169CrossRefPubMedPubMedCentral Lynch PJ, Tong J, Lehane M, Mallet A, Giblin L, Heffron JJ, Vaughan P, Zafra G, MacLennan D, McCarthy T (1999) A mutation in the transmembrane/luminal domain of the ryanodine receptor is associated with abnormal Ca2+ release channel function and severe central core disease. Proc Natl Acad Sci U S A 96:4164–4169CrossRefPubMedPubMedCentral
38.
Zurück zum Zitat Vargas-Poussou R, Dahan K, Kahila D, Venisse A, Riveira-Munoz E, Debaix H, Grisart B, Bridoux F, Unwin R, Moulin B, Haymann JP, Vantyghem MC, Rigothier C, Dussol B, Godin M, Nivet H, Dubourg L, Tack I, Gimenez-Roqueplo AP, Houillier P, Blanchard A, Devuyst O, Jeunemaitre X (2011) Spectrum of mutations in Gitelman syndrome. J Am Soc Nephrol 22:693–703. https://doi.org/10.1681/ASN.2010090907 CrossRefPubMedPubMedCentral Vargas-Poussou R, Dahan K, Kahila D, Venisse A, Riveira-Munoz E, Debaix H, Grisart B, Bridoux F, Unwin R, Moulin B, Haymann JP, Vantyghem MC, Rigothier C, Dussol B, Godin M, Nivet H, Dubourg L, Tack I, Gimenez-Roqueplo AP, Houillier P, Blanchard A, Devuyst O, Jeunemaitre X (2011) Spectrum of mutations in Gitelman syndrome. J Am Soc Nephrol 22:693–703. https://​doi.​org/​10.​1681/​ASN.​2010090907 CrossRefPubMedPubMedCentral
39.
Zurück zum Zitat Gempel K, Topaloglu H, Talim B, Schneiderat P, Schoser BG, Hans VH, Pálmafy B, Kale G, Tokatli A, Quinzii C, Hirano M, Naini A, DiMauro S, Prokisch H, Lochmüller H, Horvath R (2007) The myopathic form of coenzyme Q10 deficiency is caused by mutations in the electron-transferring-flavoprotein dehydrogenase (ETFDH) gene. Brain 130:2037–2044. https://doi.org/10.1093/brain/awm054 CrossRefPubMed Gempel K, Topaloglu H, Talim B, Schneiderat P, Schoser BG, Hans VH, Pálmafy B, Kale G, Tokatli A, Quinzii C, Hirano M, Naini A, DiMauro S, Prokisch H, Lochmüller H, Horvath R (2007) The myopathic form of coenzyme Q10 deficiency is caused by mutations in the electron-transferring-flavoprotein dehydrogenase (ETFDH) gene. Brain 130:2037–2044. https://​doi.​org/​10.​1093/​brain/​awm054 CrossRefPubMed
40.
Zurück zum Zitat Mancuso M, Salviati L, Sacconi S, Otaegui D, Camaño P, Marina A, Bacman S, Moraes CT, Carlo JR, Garcia M, Garcia-Alvarez M, Monzon L, Naini AB, Hirano M, Bonilla E, Taratuto AL, DiMauro S, Vu TH (2002) Mitochondrial DNA depletion: mutations in thymidine kinase gene with myopathy and SMA. Neurology 59:1197–1202CrossRefPubMed Mancuso M, Salviati L, Sacconi S, Otaegui D, Camaño P, Marina A, Bacman S, Moraes CT, Carlo JR, Garcia M, Garcia-Alvarez M, Monzon L, Naini AB, Hirano M, Bonilla E, Taratuto AL, DiMauro S, Vu TH (2002) Mitochondrial DNA depletion: mutations in thymidine kinase gene with myopathy and SMA. Neurology 59:1197–1202CrossRefPubMed
44.
Zurück zum Zitat Richard I, Roudaut C, Saenz A, Pogue R, Grimbergen JE, Anderson LV, Beley C, Cobo AM, de Diego C, Eymard B, Gallano P, Ginjaar HB, Lasa A, Pollitt C, Topaloglu H, Urtizberea JA, de Visser M, van der Kooi A, Bushby K, Bakker E, Lopez de Munain A, Fardeau M, Beckmann JS (1999) Calpainopathy-a survey of mutations and polymorphisms. Am J Hum Genet 64:1524–1540. https://doi.org/10.1086/302426 CrossRefPubMedPubMedCentral Richard I, Roudaut C, Saenz A, Pogue R, Grimbergen JE, Anderson LV, Beley C, Cobo AM, de Diego C, Eymard B, Gallano P, Ginjaar HB, Lasa A, Pollitt C, Topaloglu H, Urtizberea JA, de Visser M, van der Kooi A, Bushby K, Bakker E, Lopez de Munain A, Fardeau M, Beckmann JS (1999) Calpainopathy-a survey of mutations and polymorphisms. Am J Hum Genet 64:1524–1540. https://​doi.​org/​10.​1086/​302426 CrossRefPubMedPubMedCentral
45.
Zurück zum Zitat Dinçer P, Leturcq F, Richard I, Piccolo F, Yalnizoglu D, de Toma C, Akçören Z, Broux O, Deburgrave N, Brenguier L, Roudaut C, Urtizberea JA, Jung D, Tan E, Jeanpierre M, Campbell KP, Kaplan JC, Beckmann JS, Topaloglu H (1997) A biochemical, genetic, and clinical survey of autosomal recessive limb girdle muscular dystrophies in Turkey. Ann Neurol 42:222–229. https://doi.org/10.1002/ana.410420214 CrossRefPubMed Dinçer P, Leturcq F, Richard I, Piccolo F, Yalnizoglu D, de Toma C, Akçören Z, Broux O, Deburgrave N, Brenguier L, Roudaut C, Urtizberea JA, Jung D, Tan E, Jeanpierre M, Campbell KP, Kaplan JC, Beckmann JS, Topaloglu H (1997) A biochemical, genetic, and clinical survey of autosomal recessive limb girdle muscular dystrophies in Turkey. Ann Neurol 42:222–229. https://​doi.​org/​10.​1002/​ana.​410420214 CrossRefPubMed
48.
Zurück zum Zitat Cagliani R, Fortunato F, Giorda R, Rodolico C, Bonaglia MC, Sironi M, D'Angelo MG, Prelle A, Locatelli F, Toscano A, Bresolin N, Comi GP (2003) Molecular analysis of LGMD-2B and MM patients: identification of novel DYSF mutations and possible founder effect in the Italian population. Neuromuscul Disord 13:788–795CrossRefPubMed Cagliani R, Fortunato F, Giorda R, Rodolico C, Bonaglia MC, Sironi M, D'Angelo MG, Prelle A, Locatelli F, Toscano A, Bresolin N, Comi GP (2003) Molecular analysis of LGMD-2B and MM patients: identification of novel DYSF mutations and possible founder effect in the Italian population. Neuromuscul Disord 13:788–795CrossRefPubMed
49.
51.
Zurück zum Zitat Balci B, Wilichowski E, Haliloğlu G et al (2004) Beta-sarcoglycan gene mutations in Turkey. Acta Myol 23:154–158PubMed Balci B, Wilichowski E, Haliloğlu G et al (2004) Beta-sarcoglycan gene mutations in Turkey. Acta Myol 23:154–158PubMed
53.
Zurück zum Zitat Moghadaszadeh B, Petit N, Jaillard C, Brockington M, Quijano Roy S, Merlini L, Romero N, Estournet B, Desguerre I, Chaigne D, Muntoni F, Topaloglu H, Guicheney P (2001) Mutations in SEPN1 cause congenital muscular dystrophy with spinal rigidity and restrictive respiratory syndrome. Nat Genet 29:17–18. https://doi.org/10.1038/ng713 CrossRefPubMed Moghadaszadeh B, Petit N, Jaillard C, Brockington M, Quijano Roy S, Merlini L, Romero N, Estournet B, Desguerre I, Chaigne D, Muntoni F, Topaloglu H, Guicheney P (2001) Mutations in SEPN1 cause congenital muscular dystrophy with spinal rigidity and restrictive respiratory syndrome. Nat Genet 29:17–18. https://​doi.​org/​10.​1038/​ng713 CrossRefPubMed
54.
Zurück zum Zitat Trip J, Drost G, Verbove DJ, van der Kooi A, Kuks JB, Notermans NC, Verschuuren JJ, de Visser M, van Engelen B, Faber CG, Ginjaar IB (2008) In tandem analysis of CLCN1 and SCN4A greatly enhances mutation detection in families with non-dystrophic myotonia. Eur J Hum Genet 16:921–929. https://doi.org/10.1038/ejhg.2008.39 CrossRefPubMed Trip J, Drost G, Verbove DJ, van der Kooi A, Kuks JB, Notermans NC, Verschuuren JJ, de Visser M, van Engelen B, Faber CG, Ginjaar IB (2008) In tandem analysis of CLCN1 and SCN4A greatly enhances mutation detection in families with non-dystrophic myotonia. Eur J Hum Genet 16:921–929. https://​doi.​org/​10.​1038/​ejhg.​2008.​39 CrossRefPubMed
Metadaten
Titel
Clinical exome sequencing in neuromuscular diseases: an experience from Turkey
verfasst von
Esra Börklü-Yücel
Çiğdem Demiriz
Şahin Avcı
Ebru Nur Vanlı-Yavuz
Serpil Eraslan
Piraye Oflazer
Hülya Kayserili
Publikationsdatum
05.03.2020
Verlag
Springer International Publishing
Erschienen in
Neurological Sciences / Ausgabe 8/2020
Print ISSN: 1590-1874
Elektronische ISSN: 1590-3478
DOI
https://doi.org/10.1007/s10072-020-04304-w

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