nach oben

Erschienen in:

08.06.2016 | Annotated Sequence Record

Cnidoscolus mosaic leaf deformation virus: a novel begomovirus infecting euphorbiaceous plants in Brazil

verfasst von: Aline M. Melo, Sarah J. C. Silva, Roberto Ramos-Sobrinho, Mayra M. M. Ferro, Iraildes P. Assunção, Gaus S. A. Lima

Erschienen in: Archives of Virology | Ausgabe 9/2016

Einloggen, um Zugang zu erhalten

Abstract

Begomoviruses have been detected infecting the weed Cnidoscolus urens (family Euphorbiaceae) since 2004, but the viral species to which these viruses belonged was not known. Here, we report for the first time the complete genome sequence of a bipartite begomovirus obtained from C. urens collected in the state of Alagoas, Brazil. This isolate met the criteria to be classified as a member of a new begomovirus species, and the tentative name cnidoscolus mosaic leaf deformation virus (CnMLDV) is proposed. Pairwise sequence comparisons and phylogenetic analysis showed that the DNA-A genomic component of CnMLDV is most closely related to that of passionfruit severe leaf distortion virus, with 86.3 % nucleotide sequence identity.

Nur mit Berechtigung zugänglich

Brown JK, Fauquet CM, Briddon RW, Zerbini FM, Moriones E, Navas-Castillo J (2012) Family Geminiviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy. Ninth Report of the International Committee on Taxonomy of Viruses. Elsevier/Academic Press, London, pp 351–373

Morales FJ (2010) Distribution and dissemination of begomoviruses in Latin America and the Caribbean. In: Stansly PA, Naranjo SE (eds) Bemisia bionomics and management of global pest. Springer, Berlin, pp 283–318

Navas-Castillo J, Fiallo-Olivé E, Sánchez-Campos S (2011) Emerging virus diseases transmitted by whiteflies. Annu Rev Phytopathol 49:219–248CrossRefPubMed

Barreto SS, Hallwass M, Aquino OM, Inoue-Nagata AK (2013) A study of weeds as potential inoculum sources for a tomato-infecting begomovirus in Central Brazil. Phytopathology 103:436–444CrossRefPubMed

Rocha CS, Castillo-Urquiza GP, Lima ATM, Silva FN, Xavier CAD, Hora-Júnior BT, Beserra-Júnior EA, Malta AWO, Martin DP, Varsani A, Alfenas-Zerbini P, Mizubuti ESG, Zerbini FM (2013) Brazilian begomovirus populations are highly recombinant, rapidly evolving and segregated based on geographical location. J Virol 87:5784–5799CrossRefPubMedPubMedCentral

Hernández-Zepeda C, Idris AM, Carnevali G, Brown JK, Moreno-Valenzuela OA (2007) Molecular characterization and experimental host range of Euphobia mosaic virus-Yucatan Peninsula a begomovirus species in the Squash leaf curl virus. Plant Pathol 56:763–770CrossRef

Hussain K, Hussain M, Mansoor S, Briddon RW (2011) Complete nucleotide sequence of a begomovirus and associated betasatellite infecting croton (Croton bonplandianus) in Pakistan. Arch Virol 156:1101–1105CrossRefPubMed

Fernandes FR, Albuquerque LC, Oliveira CL, Cruz ARR, Rocha WB, Pereira TG, Naito FYB, Dias NM, Nagata T, Faria JC, Zerbini FM, Aragão FJL, Inoue-Nagata AK (2011) Molecular and biological characterization of a new Brazilian begomovirus, euphorbia yellow mosaic virus (EuYMV), infecting Euphorbia heterophylla plants. Arch Virol 156:2063–2069CrossRefPubMed

Fiallo-Olivé E, Chirinos DT, Geraud-Pouey F, Moriones E, Navas-Castillo J (2013) Complete genome sequences of two begomoviruses infecting weeds in Venezuela. Arch Virol 158:277–280CrossRefPubMed

10.

Simmonds-Gordon RN, Collins-Fairclough AM, Stewart CS, Roye ME (2014) First report of a complete genome sequence for a begomovirus infecting Jatropha gossypifolia in the Americas. Arch Virol 159:2815–2818CrossRefPubMed

11.

Costa AS, Bennett CW (1950) Whitefly-transmitted mosaic of Euphorbia prunifolia. Phytopathology 40:266–283

12.

Tavares SS, Ramos-Sobrinho R, González-Aguilera J, Lima GSA, Assunção IP, Zerbini FM (2012) Further molecular characterization of weed-associated begomoviruses in Brazil with an emphasis on Sida spp. Planta Daninha 30:305–315CrossRef

13.

Silva SJC, Castillo-Urquiza GP, Hora-Júnior BT, Assunção IP, Lima GSA, Pio-Ribeiro G, Mizubuti ESG, Zerbini FM (2012) Species diversity, phylogeny and genetic variability of begomovirus populations infecting leguminous weeds in northeastern Brazil. Plant Pathol 61:457–467CrossRef

14.

Assunção IP, Listik AF, Barros MCS, Amorim EPR, Silva SJC, Silva IO, Ramalho-Neto CE, Lima GSA (2006) Diversidade genética de Begomovirus que infectam plantas invasoras na região nordeste. Planta Daninha 24:239–244CrossRef

15.

Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11–15

16.

Inoue-Nagata AK, Albuquerque LC, Rocha WB, Nagata T (2004) A simple method for cloning the complete begomovirus genome using the bacteriophage φ29 DNA polymerase. J Virol Methods 16:209–211CrossRef

17.

Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410CrossRefPubMed

18.

Muhire B, Varsani A, Martin DP (2014) SDT: a virus classification tool based on pairwise sequence alignment and identity calculation. PLoS One 9:1–8CrossRef

19.

Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739CrossRefPubMedPubMedCentral

20.

Ronquist F, Teslenko M, van der Mark P, Ayres D, Darling A, Hönah S, Larget B, Liu L, Suchard MA, Huelsenbeck JP (2012) MrBayes 3.2: efficient Bayesian phylogenetic interference and model choice across a large model space. Syst Biol Adv Access 61:539–542CrossRef

21.

Miller MA, Holder MT, Vos R, Midford PE, Liebowitz T, Chan L, Hoover P, Warnow T (2010) The CIPRES portals. CIPRES. http://www.phylo.org/sub-sections/portal. Accessed 20 Nov 2015

22.

Posada D, Buckley TR (2004) Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio test. Syst Biol 53:793–808CrossRefPubMed

23.

Rannala B, Yang Z (1996) Probability distributions of molecular evolutionary trees: a new method of phylogenetic inference. J Mol Evol 43:304–311CrossRefPubMed

24.

Martin DP, Murrell B, Golden M, Khoosal A, Muhire B (2015) RDP: detection and analysis of recombination patterns in virus genome. Virus Evol 1:1–5CrossRef

25.

Brown JK, Zerbini FM, Navas-Castillo J, Moriones E, Ramos-Sobrinho R, Silva JCF, Fiallo-Olive E, Briddon R, Hernandez-Zepeda C, Idris A, Malathi V, Martin DP, Rivera-Bustamante R, Ueda S, Varsani A (2015) Revision of Begomovirus taxonomy based on pairwise sequence comparisons. Archives of Virology 160:1593–1619CrossRefPubMed

26.

Albuquerque LC, Varsani A, Fernandes FR, Pinheiro B, Ferreira PTO, Lemos TO, Inoue-Nagata AK (2012) Further characterization of tomato-infecting begomoviruses in Brazil. Arch Virol 157:747–752CrossRefPubMed

Titel: Cnidoscolus mosaic leaf deformation virus: a novel begomovirus infecting euphorbiaceous plants in Brazil
verfasst von: Aline M. Melo
Sarah J. C. Silva
Roberto Ramos-Sobrinho
Mayra M. M. Ferro
Iraildes P. Assunção
Gaus S. A. Lima
Publikationsdatum: 08.06.2016
Verlag: Springer Vienna
Erschienen in: Archives of Virology / Ausgabe 9/2016
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-016-2919-3

Leitlinien kompakt für die Innere Medizin

Mit medbee Pocketcards sicher entscheiden.

^{Seit 2022 gehört die medbee GmbH zum Springer Medizin Verlag}

Kostenlos registrieren

Neu im Fachgebiet Innere Medizin

25.04.2024 | Hypotonie | Nachrichten

Update Innere Medizin

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.

Newsletter bestellen

Springer Medizin

Cnidoscolus mosaic leaf deformation virus: a novel begomovirus infecting euphorbiaceous plants in Brazil

Abstract

Leitlinien kompakt für die Innere Medizin

Neu im Fachgebiet Innere Medizin

Niedriger diastolischer Blutdruck erhöht Risiko für schwere kardiovaskuläre Komplikationen

Therapiestart mit Blutdrucksenkern erhöht Frakturrisiko

Adjuvante Immuntherapie verlängert Leben bei RCC

Alectinib verbessert krankheitsfreies Überleben bei ALK-positivem NSCLC

Update Innere Medizin

Springer Medizin

Abstract

Bitte loggen Sie sich ein, um Zugang zu diesem Inhalt zu erhalten

Weitere Artikel der Ausgabe 9/2016

Complete genome sequence of tobacco mosqueado virus

Phylogenetic tracking of current porcine epidemic diarrhea virus (PEDV) strains in the Philippines

Isolation and characterization of a distinct duck-origin goose parvovirus causing an outbreak of duckling short beak and dwarfism syndrome in China

Genome sequence of a novel mitovirus identified in the phytopathogenic fungus Alternaria arborescens

Profile of expression of certain markers of apoptosis in chronic hepatitis C and hepatitis B patients in an Egyptian population

Citron kinase enhances ubiquitination of HIV-1 Gag protein and intracellular HIV-1 budding

Leitlinien kompakt für die Innere Medizin

Neu im Fachgebiet Innere Medizin

Niedriger diastolischer Blutdruck erhöht Risiko für schwere kardiovaskuläre Komplikationen

Therapiestart mit Blutdrucksenkern erhöht Frakturrisiko

Adjuvante Immuntherapie verlängert Leben bei RCC

Alectinib verbessert krankheitsfreies Überleben bei ALK-positivem NSCLC

Update Innere Medizin