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Erschienen in: Wiener klinische Wochenschrift 11-12/2017

13.09.2016 | original article

Comparison of rapid hybridization-based pathogen identification and resistance evaluation in sepsis using the Verigene® device paired with “good old culture”

verfasst von: Michael Berktold, Wolfgang Mutschlechner, Dorothea Orth-Höller

Erschienen in: Wiener klinische Wochenschrift | Ausgabe 11-12/2017

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Summary

Rapid microbial diagnostics is important for septicemic patients. The current gold standard is blood culture with consecutive pathogen identification and antimicrobial susceptibility testing. However, these culture-based methods need at least 48 h.
The aim of this study was to compare Verigene® (Nanosphere, Northbrook, IL, USA), a rapid hybridization-based method, with conventional culture-based methods for detection of pathogens and resistance markers from positive blood cultures of septic patients.
In 85 of 100 tested blood culture samples (85 %), pathogen identification as well as resistance profile were identical in Verigene and conventional culture. In 4 %, discordant results were observed. In 9 %, conventional culture revealed a pathogen ID or resistance phenotype not included in the Verigene panel. In 2 % no Verigene result was available.
In conclusion, Verigene offers the availability of fast and reliable pathogen identification and resistance profile determination, which may result in an earlier start of adequate antimicrobial treatment.
Literatur
1.
Zurück zum Zitat Loonen AJM, Wolffs PFG, Bruggeman CA, van den Brule AJC. Developments for improved diagnosis of bacterial bloodstream infections. Eur J Clin Microbiol Infect Dis. 2014;33(10):1687–702.CrossRefPubMed Loonen AJM, Wolffs PFG, Bruggeman CA, van den Brule AJC. Developments for improved diagnosis of bacterial bloodstream infections. Eur J Clin Microbiol Infect Dis. 2014;33(10):1687–702.CrossRefPubMed
2.
Zurück zum Zitat Klouche M, Schröder U. Rapid methods for diagnosis of bloodstream infections. Clin Chem Lab Med. 2008;46(7):888–908.PubMed Klouche M, Schröder U. Rapid methods for diagnosis of bloodstream infections. Clin Chem Lab Med. 2008;46(7):888–908.PubMed
3.
Zurück zum Zitat The European Committee on Antimicrobial Susceptibility Testing. Breakpoint tables for interpretation of MICs and zone diameters. Version 3.1 2013. http://www.eucast.org. The European Committee on Antimicrobial Susceptibility Testing. Breakpoint tables for interpretation of MICs and zone diameters. Version 3.1 2013. http://​www.​eucast.​org.
4.
Zurück zum Zitat Kirkwood BR. Essential medical statistics. 1st edn. Oxford: Blackwell Science; 1988. pp. 76–86. Kirkwood BR. Essential medical statistics. 1st edn. Oxford: Blackwell Science; 1988. pp. 76–86.
5.
Zurück zum Zitat Martin GS, Maninno DM, Eaton S, Moss M. The epidemiology of sepsis in the united states from 1979 to 2000. N Engl J Med. 2003;348(16):1546–54.CrossRefPubMed Martin GS, Maninno DM, Eaton S, Moss M. The epidemiology of sepsis in the united states from 1979 to 2000. N Engl J Med. 2003;348(16):1546–54.CrossRefPubMed
6.
Zurück zum Zitat Soogard M, Norgaard M, Dethlefsen C, Schonheyder HC. Temporal changes in the incidence and 30-day mortality associated with bacteremia in hospitalized patients from 1992 through 2006: a population-based cohort study. Clin Infect Dis. 2011;52(1):61–9.CrossRef Soogard M, Norgaard M, Dethlefsen C, Schonheyder HC. Temporal changes in the incidence and 30-day mortality associated with bacteremia in hospitalized patients from 1992 through 2006: a population-based cohort study. Clin Infect Dis. 2011;52(1):61–9.CrossRef
7.
Zurück zum Zitat Skogberg K, Lyytikainen O, Ollgren J, Nuorti JP, Ruutu P. Population-based burden of bloodstream infections in Finland. Clin Microbiol Infect. 2012;18(6):E170–6.CrossRefPubMed Skogberg K, Lyytikainen O, Ollgren J, Nuorti JP, Ruutu P. Population-based burden of bloodstream infections in Finland. Clin Microbiol Infect. 2012;18(6):E170–6.CrossRefPubMed
8.
Zurück zum Zitat Wilson J, Elgohari S, Livermoore DM, et al. Trends among pathogens reported as causing bacteraemia in England. Clin Microbiol Infect. 2011;17(3):451–8.CrossRefPubMed Wilson J, Elgohari S, Livermoore DM, et al. Trends among pathogens reported as causing bacteraemia in England. Clin Microbiol Infect. 2011;17(3):451–8.CrossRefPubMed
9.
Zurück zum Zitat Moerer O, Quintel M. Sepsis in adult patients – definitions, epidemiology and economic aspects. Internist. 2009;50(7):788, 790–794,796–798.CrossRefPubMed Moerer O, Quintel M. Sepsis in adult patients – definitions, epidemiology and economic aspects. Internist. 2009;50(7):788, 790–794,796–798.CrossRefPubMed
10.
Zurück zum Zitat Stiermaier T, Herkner H. Tobudic S et al Incidence and long-term outcome of sepsis on general wards and in an ICU at the General Hospital of Vienna: an observational cohort study. Wien Klin Wochenschr. 2013;125(11–12):302–8.CrossRefPubMed Stiermaier T, Herkner H. Tobudic S et al Incidence and long-term outcome of sepsis on general wards and in an ICU at the General Hospital of Vienna: an observational cohort study. Wien Klin Wochenschr. 2013;125(11–12):302–8.CrossRefPubMed
11.
Zurück zum Zitat Angus DC, Linde-Zwirble WT, Lidicker J, Clermont G, Carcillo J, Pinsky MR. Epidemiology of severe sepsis in the United States: analysis of incidence, outcome, and associated costs of care. Crit Care Med. 2001;29(7):1303–10.CrossRefPubMed Angus DC, Linde-Zwirble WT, Lidicker J, Clermont G, Carcillo J, Pinsky MR. Epidemiology of severe sepsis in the United States: analysis of incidence, outcome, and associated costs of care. Crit Care Med. 2001;29(7):1303–10.CrossRefPubMed
12.
Zurück zum Zitat Micek ST, Welch EC. Khan J et al Empiric combination antibiotic therapy is associated with improved outcome against sepsis due to gram-negative bacteria: a retrospective analysis. Antimicrob Agents Chemother. 2010;54(5):1742–8.CrossRefPubMedPubMedCentral Micek ST, Welch EC. Khan J et al Empiric combination antibiotic therapy is associated with improved outcome against sepsis due to gram-negative bacteria: a retrospective analysis. Antimicrob Agents Chemother. 2010;54(5):1742–8.CrossRefPubMedPubMedCentral
13.
Zurück zum Zitat Ramphal R. Importance of adequate initial antimicrobial therapy. Chemotherapy. 2005;51(4):171–6.CrossRefPubMed Ramphal R. Importance of adequate initial antimicrobial therapy. Chemotherapy. 2005;51(4):171–6.CrossRefPubMed
14.
Zurück zum Zitat Bhatti MM, Boonlayangoor S, Beavis KG, Tesic V. Evaluation of FilmArray and Verigene systems for rapid identification of positive blood cultures. J Clin Microbiol. 2014;52(9):3433–6.CrossRefPubMedPubMedCentral Bhatti MM, Boonlayangoor S, Beavis KG, Tesic V. Evaluation of FilmArray and Verigene systems for rapid identification of positive blood cultures. J Clin Microbiol. 2014;52(9):3433–6.CrossRefPubMedPubMedCentral
15.
Zurück zum Zitat Dodémont M, De Mendonça R, Nonhoff C, Roisin S, Denis O. Performance of the Verigene Gram-negative blood culture assay for rapid detection of bacteria and resistance determinants. J Clin Microbiol. 2014;52(8):3085–7.CrossRefPubMedPubMedCentral Dodémont M, De Mendonça R, Nonhoff C, Roisin S, Denis O. Performance of the Verigene Gram-negative blood culture assay for rapid detection of bacteria and resistance determinants. J Clin Microbiol. 2014;52(8):3085–7.CrossRefPubMedPubMedCentral
16.
Zurück zum Zitat Dodémont M, De Mendonça R, Nonhoff C, Roisin S, Denis O. Evaluation of Verigene Gram-positive blood culture assay performance for bacteremic patients. Eur J Clin Microbiol Infect Dis. 2015;34(3):473–7.CrossRefPubMed Dodémont M, De Mendonça R, Nonhoff C, Roisin S, Denis O. Evaluation of Verigene Gram-positive blood culture assay performance for bacteremic patients. Eur J Clin Microbiol Infect Dis. 2015;34(3):473–7.CrossRefPubMed
17.
Zurück zum Zitat Grif K, Fille M. Würzner R et al Rapid detection of bloodstream pathogens by real-time PCR in patients with sepsis. Wien Klin Wochenschr. 2012;124(7–8):266–70.CrossRefPubMed Grif K, Fille M. Würzner R et al Rapid detection of bloodstream pathogens by real-time PCR in patients with sepsis. Wien Klin Wochenschr. 2012;124(7–8):266–70.CrossRefPubMed
18.
Zurück zum Zitat Burdino E, Ruggiero T, Allice T, et al. Combination of conventional blood culture and the SeptiFast molecular test in patients with suspected sepsis for the identification of bloodstream pathogens. Diagn Microbiol Infect Dis. 2014;79(3):3085–7.CrossRef Burdino E, Ruggiero T, Allice T, et al. Combination of conventional blood culture and the SeptiFast molecular test in patients with suspected sepsis for the identification of bloodstream pathogens. Diagn Microbiol Infect Dis. 2014;79(3):3085–7.CrossRef
19.
Zurück zum Zitat Tortorano AM, Peman J, Bernhardt H, et al. Epidemiology of candidaemia in Europe: results of 28-month European Confederation of Medical Mycology (ECMM) hospital-based surveillance study. Eur J Clin Microbiol Infect Dis. 2004;23(4):317–22.CrossRefPubMed Tortorano AM, Peman J, Bernhardt H, et al. Epidemiology of candidaemia in Europe: results of 28-month European Confederation of Medical Mycology (ECMM) hospital-based surveillance study. Eur J Clin Microbiol Infect Dis. 2004;23(4):317–22.CrossRefPubMed
20.
Zurück zum Zitat Ledeboer AL, Lopansri BK, Dhiman N, et al. Identification of gram-negative bacteria and genetic resistance determinants from positive blood culture broths by use of the verigene gram-negative blood culture multiplex microarray-based molecular assay. J Clin Microbiol. 2015;53(8):2460–72.CrossRefPubMedPubMedCentral Ledeboer AL, Lopansri BK, Dhiman N, et al. Identification of gram-negative bacteria and genetic resistance determinants from positive blood culture broths by use of the verigene gram-negative blood culture multiplex microarray-based molecular assay. J Clin Microbiol. 2015;53(8):2460–72.CrossRefPubMedPubMedCentral
21.
Zurück zum Zitat Tojo M, Fujita T, Ainoda Y, et al. Evaluation of an automated rapid diagnostic assay for detection of gram-negative bacteria and their drug-resistance genes in positive blood cultures. PLoS ONE. 2014;9(4):e94064.CrossRefPubMedPubMedCentral Tojo M, Fujita T, Ainoda Y, et al. Evaluation of an automated rapid diagnostic assay for detection of gram-negative bacteria and their drug-resistance genes in positive blood cultures. PLoS ONE. 2014;9(4):e94064.CrossRefPubMedPubMedCentral
22.
Zurück zum Zitat Samuel LP, Tibbetts RJ, Agotesku A, Fey M, Hensley R, Meier FA. Evaluation of a microarray-based assay for rapid identification of gram-positive organisms and resistance markers in positive blood cultures. J Clin Microbiol. 2013;51(4):1188–92.CrossRefPubMedPubMedCentral Samuel LP, Tibbetts RJ, Agotesku A, Fey M, Hensley R, Meier FA. Evaluation of a microarray-based assay for rapid identification of gram-positive organisms and resistance markers in positive blood cultures. J Clin Microbiol. 2013;51(4):1188–92.CrossRefPubMedPubMedCentral
23.
Zurück zum Zitat Jakovljev A, Bergh K. Development of a rapid and simplified protocol for direct bacterial identification from positive blood cultures by using matrix assisted laser desorption ionization time-of-flight mass spectrometry. BMC Microbiol. 2015;15(1):258. Jakovljev A, Bergh K. Development of a rapid and simplified protocol for direct bacterial identification from positive blood cultures by using matrix assisted laser desorption ionization time-of-flight mass spectrometry. BMC Microbiol. 2015;15(1):258.
Metadaten
Titel
Comparison of rapid hybridization-based pathogen identification and resistance evaluation in sepsis using the Verigene® device paired with “good old culture”
verfasst von
Michael Berktold
Wolfgang Mutschlechner
Dorothea Orth-Höller
Publikationsdatum
13.09.2016
Verlag
Springer Vienna
Erschienen in
Wiener klinische Wochenschrift / Ausgabe 11-12/2017
Print ISSN: 0043-5325
Elektronische ISSN: 1613-7671
DOI
https://doi.org/10.1007/s00508-016-1057-y

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