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Erschienen in: Archives of Virology 12/2017

13.09.2017 | Brief Report

Complete genome analysis of a novel umbravirus-polerovirus combination isolated from Ixeridium dentatum

verfasst von: Ran Hee Yoo, Seung-Won Lee, Seungmo Lim, Fumei Zhao, Davaajargal Igori, Dasom Baek, Jin-Sung Hong, Su-Heon Lee, Jae Sun Moon

Erschienen in: Archives of Virology | Ausgabe 12/2017

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Abstract

Two novel viruses, isolated in Bonghwa, Republic of Korea, from an Ixeridium dentatum plant with yellowing mottle symptoms, have been provisionally named Ixeridium yellow mottle-associated virus 1 (IxYMaV-1) and Ixeridium yellow mottle-associated virus 2 (IxYMaV-2). IxYMaV-1 has a genome of 6,017 nucleotides sharing a 56.4% sequence identity with that of cucurbit aphid-borne yellows virus (genus Polerovirus). The IxYMaV-2 genome of 4,196 nucleotides has a sequence identity of less than 48.3% with e other species classified within the genus Umbravirus. Genome properties and phylogenetic analysis suggested that IxYMaV-1 and -2 are representative isolates of new species classifiable within the genus Polerovirus and Umbravirus, respectively.
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Literatur
1.
Zurück zum Zitat Stuart G, Moffett K, Bozarth RF (2004) A whole genome perspective on the phylogeny of the plant virus family Tombusviridae. Arch Virol 149:1595–1610CrossRefPubMed Stuart G, Moffett K, Bozarth RF (2004) A whole genome perspective on the phylogeny of the plant virus family Tombusviridae. Arch Virol 149:1595–1610CrossRefPubMed
2.
Zurück zum Zitat Syller J (2003) Molecular and biological features of umbraviruses the unusual plant viruses lacking genetic information for a capsid protein. Physiol Mol Plant P 63:35–46CrossRef Syller J (2003) Molecular and biological features of umbraviruses the unusual plant viruses lacking genetic information for a capsid protein. Physiol Mol Plant P 63:35–46CrossRef
3.
Zurück zum Zitat Taliansky M, Roberts IM, Kalinina N, Ryabov EV, Raj SK, Robinson DJ, Oparka KJ (2003) An umbraviral protein, involved in long-distance RNA movement, binds viral RNA and forms unique, protective ribonucleoprotein complexes. J Virol 77:3031–3040CrossRefPubMedPubMedCentral Taliansky M, Roberts IM, Kalinina N, Ryabov EV, Raj SK, Robinson DJ, Oparka KJ (2003) An umbraviral protein, involved in long-distance RNA movement, binds viral RNA and forms unique, protective ribonucleoprotein complexes. J Virol 77:3031–3040CrossRefPubMedPubMedCentral
4.
Zurück zum Zitat Taliansky ME, Robinson DJ (2003) Molecular biology of umbraviruses: phantom warriors. J Gen Virol 84:1951–1960CrossRefPubMed Taliansky ME, Robinson DJ (2003) Molecular biology of umbraviruses: phantom warriors. J Gen Virol 84:1951–1960CrossRefPubMed
5.
Zurück zum Zitat Miller WA, Liu S, Beckett R (2002) Barley yellow dwarf virus: Luteoviridae or Tombusviridae? Mol Plant Pathol 3:177–183CrossRefPubMed Miller WA, Liu S, Beckett R (2002) Barley yellow dwarf virus: Luteoviridae or Tombusviridae? Mol Plant Pathol 3:177–183CrossRefPubMed
7.
Zurück zum Zitat Peter KA, Liang D, Palukaitis P, Gray SM (2008) Small deletions in the potato leafroll virus readthrough protein affect particle morphology, aphid transmission, virus movement and accumulation. J Gen Virol 89:2037–2045CrossRefPubMed Peter KA, Liang D, Palukaitis P, Gray SM (2008) Small deletions in the potato leafroll virus readthrough protein affect particle morphology, aphid transmission, virus movement and accumulation. J Gen Virol 89:2037–2045CrossRefPubMed
8.
Zurück zum Zitat Pfeffer S, Dunoyer P, Heim F, Richards KE, Jonard G, Ziegler-Graff V (2002) P0 of beet western yellows virus is a suppressor of posttranscriptional gene silencing. J Virol 76:6815–6824CrossRefPubMedPubMedCentral Pfeffer S, Dunoyer P, Heim F, Richards KE, Jonard G, Ziegler-Graff V (2002) P0 of beet western yellows virus is a suppressor of posttranscriptional gene silencing. J Virol 76:6815–6824CrossRefPubMedPubMedCentral
9.
Zurück zum Zitat Park EK, Sung JH, Trinh HT, Bae EA, Yun HK, Hong SS, Kim DH (2008) Lactic acid bacterial fermentation increases the antiallergic effects of Ixeris dentata. J Microbiol Biotechnol 18:308–313PubMed Park EK, Sung JH, Trinh HT, Bae EA, Yun HK, Hong SS, Kim DH (2008) Lactic acid bacterial fermentation increases the antiallergic effects of Ixeris dentata. J Microbiol Biotechnol 18:308–313PubMed
10.
Zurück zum Zitat Nam M, Kim SM, Domier LL, Koh S, Moon JK, Choi HS, Kim HG, Moon JS, Lee SH (2009) Nucleotide sequence and genomic organization of a newly identified member of the genus Carmovirus, soybean yellow mottle mosaic virus, from soybean. Arch Virol 154:1679–1684CrossRefPubMed Nam M, Kim SM, Domier LL, Koh S, Moon JK, Choi HS, Kim HG, Moon JS, Lee SH (2009) Nucleotide sequence and genomic organization of a newly identified member of the genus Carmovirus, soybean yellow mottle mosaic virus, from soybean. Arch Virol 154:1679–1684CrossRefPubMed
11.
Zurück zum Zitat Garcia A, van Duin J, Pleij CW (1993) Differential response to frameshift signals in eukaryotic and prokaryotic translational systems. Nucleic Acids Res 21:401–406CrossRefPubMedPubMedCentral Garcia A, van Duin J, Pleij CW (1993) Differential response to frameshift signals in eukaryotic and prokaryotic translational systems. Nucleic Acids Res 21:401–406CrossRefPubMedPubMedCentral
12.
Zurück zum Zitat Kujawa AB, Drugeon G, Hulanicka D, Haenni AL (1993) Structural requirements for efficient translational frameshifting in the synthesis of the putative viral RNA-dependent RNA polymerase of potato leafroll virus. Nucleic Acids Res 21:2165–2171CrossRefPubMedPubMedCentral Kujawa AB, Drugeon G, Hulanicka D, Haenni AL (1993) Structural requirements for efficient translational frameshifting in the synthesis of the putative viral RNA-dependent RNA polymerase of potato leafroll virus. Nucleic Acids Res 21:2165–2171CrossRefPubMedPubMedCentral
13.
Zurück zum Zitat King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (2012) Virus taxonomy: classification and nomenclature of viruses: ninth report of the international committee on taxonomy of viruses. Elsevier, Academic Press, Amsterdam, Cambridge King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (2012) Virus taxonomy: classification and nomenclature of viruses: ninth report of the international committee on taxonomy of viruses. Elsevier, Academic Press, Amsterdam, Cambridge
14.
Zurück zum Zitat Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729CrossRefPubMedPubMedCentral Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729CrossRefPubMedPubMedCentral
15.
16.
Metadaten
Titel
Complete genome analysis of a novel umbravirus-polerovirus combination isolated from Ixeridium dentatum
verfasst von
Ran Hee Yoo
Seung-Won Lee
Seungmo Lim
Fumei Zhao
Davaajargal Igori
Dasom Baek
Jin-Sung Hong
Su-Heon Lee
Jae Sun Moon
Publikationsdatum
13.09.2017
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 12/2017
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-017-3512-0

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