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Erschienen in: Archives of Virology 2/2018

20.10.2017 | Annotated Sequence Record

Complete genome sequence of two tomato-infecting begomoviruses in Venezuela: evidence of a putative novel species and a novel recombinant strain

verfasst von: Gustavo Romay, Dorys T. Chirinos, Francis Geraud-Pouey, Annika Gillis, Jacques Mahillon, Claude Bragard

Erschienen in: Archives of Virology | Ausgabe 2/2018

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Abstract

At least six begomovirus species have been reported infecting tomato in Venezuela. In this study the complete genomes of two tomato-infecting begomovirus isolates (referred to as Trujillo-427 and Zulia-1084) were cloned and sequenced. Both isolates showed the typical genome organization of New World bipartite begomoviruses, with DNA-A genomic components displaying 88.8% and 90.3% similarity with established begomoviruses, for isolates Trujillo-427 and Zulia-1084, respectively. In accordance to the guidelines for begomovirus species demarcation, the Trujillo-427 isolate represents a putative new species and the name “Tomato wrinkled mosaic virus” is proposed. Meanwhile, Zulia-1084 represents a putative new strain classifiable within species Tomato chlorotic leaf distortion virus, for which a recombinant origin is suggested.
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Literatur
1.
Zurück zum Zitat Argüello-Astorga GR, Ruiz-Medrano R (2001) An iteron-related domain is associated to Motif 1 in the replication proteins of geminiviruses: identification of potential interacting amino acid-base pairs by a comparative approach. Arch Virol 146:1465–1485CrossRefPubMed Argüello-Astorga GR, Ruiz-Medrano R (2001) An iteron-related domain is associated to Motif 1 in the replication proteins of geminiviruses: identification of potential interacting amino acid-base pairs by a comparative approach. Arch Virol 146:1465–1485CrossRefPubMed
2.
Zurück zum Zitat Briddon RW, Patil BL, Bagewadi B, Nawaz-ul-Rehman MS, Fauquet CM (2010) Distinct evolutionary histories of the DNA-A and DNA-B components of bipartite begomoviruses. BMC Evol Biol 10:97CrossRefPubMedPubMedCentral Briddon RW, Patil BL, Bagewadi B, Nawaz-ul-Rehman MS, Fauquet CM (2010) Distinct evolutionary histories of the DNA-A and DNA-B components of bipartite begomoviruses. BMC Evol Biol 10:97CrossRefPubMedPubMedCentral
3.
Zurück zum Zitat Brown JK, Zerbini FM, Navas-Castillo J, Moriones E, Ramos-Sobrinho R, Silva JCF, Fiallo-Olivé E, Briddon RW, Hernández-Zepeda C, Idris A, Malathi VG, Martin DP, Rivera-Bustamante R, Ueda S, Varsani A (2015) Revision of begomovirus taxonomy base on pairwise sequence comparisons. Arch Virol 160:1593–1619CrossRefPubMed Brown JK, Zerbini FM, Navas-Castillo J, Moriones E, Ramos-Sobrinho R, Silva JCF, Fiallo-Olivé E, Briddon RW, Hernández-Zepeda C, Idris A, Malathi VG, Martin DP, Rivera-Bustamante R, Ueda S, Varsani A (2015) Revision of begomovirus taxonomy base on pairwise sequence comparisons. Arch Virol 160:1593–1619CrossRefPubMed
4.
Zurück zum Zitat Collins A, Rehman MM, Chowda-Reddy RV, Wang A, Fondong V, Brown J, Roye M (2010) Molecular characterization and experimental host range of an isolate of Macroptilium golden mosaic virus that infects Wissadula amplissima in Jamaica. Virus Res 150:148–152CrossRefPubMed Collins A, Rehman MM, Chowda-Reddy RV, Wang A, Fondong V, Brown J, Roye M (2010) Molecular characterization and experimental host range of an isolate of Macroptilium golden mosaic virus that infects Wissadula amplissima in Jamaica. Virus Res 150:148–152CrossRefPubMed
6.
Zurück zum Zitat Fiallo-Olivé E, Márquez-Martín B, Hassan I, Chirinos DT, Geraud-Pouey F, Navas-Castillo J, Moriones E (2013) Complete genome sequences of two novel begomoviruses infecting common bean in Venezuela. Arch Virol 158:723–727CrossRefPubMed Fiallo-Olivé E, Márquez-Martín B, Hassan I, Chirinos DT, Geraud-Pouey F, Navas-Castillo J, Moriones E (2013) Complete genome sequences of two novel begomoviruses infecting common bean in Venezuela. Arch Virol 158:723–727CrossRefPubMed
7.
Zurück zum Zitat Geraud-Pouey F, Chirinos DT, Galindo-Castro I, Franco MA, Santana MA, Gillis A, Romay G (2016) Occurrence of six begomoviruses infecting tomato fields in Venezuela and genetic characterization of Potato yellow mosaic virus isolates. J Phytopathol 164:697–703CrossRef Geraud-Pouey F, Chirinos DT, Galindo-Castro I, Franco MA, Santana MA, Gillis A, Romay G (2016) Occurrence of six begomoviruses infecting tomato fields in Venezuela and genetic characterization of Potato yellow mosaic virus isolates. J Phytopathol 164:697–703CrossRef
8.
Zurück zum Zitat Gilbertson RL, Batuman O, Webster CG, Adkins S (2015) Role of the insect supervectors Bemisia tabaci and Frankliniella occidentalis in the emergence and global spread of plant viruses. Annu Rev Virol 2:67–93CrossRefPubMed Gilbertson RL, Batuman O, Webster CG, Adkins S (2015) Role of the insect supervectors Bemisia tabaci and Frankliniella occidentalis in the emergence and global spread of plant viruses. Annu Rev Virol 2:67–93CrossRefPubMed
9.
Zurück zum Zitat Gilbertson RL, Rojas MR, Russell DR, Maxwell DP (1991) Use of the asymmetric polymerase chain reaction and DNA sequencing to determine genetic variability of bean golden mosaic geminivirus in the Dominican Republic. J Gen Virol 72:2843–2848CrossRefPubMed Gilbertson RL, Rojas MR, Russell DR, Maxwell DP (1991) Use of the asymmetric polymerase chain reaction and DNA sequencing to determine genetic variability of bean golden mosaic geminivirus in the Dominican Republic. J Gen Virol 72:2843–2848CrossRefPubMed
10.
Zurück zum Zitat Hall TA (1999) BioEdit: a user-friendly biologically sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98 Hall TA (1999) BioEdit: a user-friendly biologically sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98
11.
Zurück zum Zitat Hanssen IM, Lapidot M, Thomma BP (2010) Emerging viral diseases of tomato crops. Mol Plant Microbe Interact 23:539–548CrossRefPubMed Hanssen IM, Lapidot M, Thomma BP (2010) Emerging viral diseases of tomato crops. Mol Plant Microbe Interact 23:539–548CrossRefPubMed
12.
Zurück zum Zitat Hernández-Zepeda C, Idris AM, Carnevali G, Brown JK, Moreno-Valenzuela OA (2007) Molecular characterization and phylogenetic relationships of two new bipartite begomovirus infecting malvaceous plants in Yucatan, Mexico. Virus Genes 35:369–377CrossRefPubMed Hernández-Zepeda C, Idris AM, Carnevali G, Brown JK, Moreno-Valenzuela OA (2007) Molecular characterization and phylogenetic relationships of two new bipartite begomovirus infecting malvaceous plants in Yucatan, Mexico. Virus Genes 35:369–377CrossRefPubMed
13.
Zurück zum Zitat Lole KS, Bollinger RC, Paranjape RS, Gadkari D, Kulkarni SS, Novak NG, Ingersoll R, Sheppard HW, Ray SC (1999) Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73:152–160PubMedPubMedCentral Lole KS, Bollinger RC, Paranjape RS, Gadkari D, Kulkarni SS, Novak NG, Ingersoll R, Sheppard HW, Ray SC (1999) Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73:152–160PubMedPubMedCentral
14.
Zurück zum Zitat Martin D, Murrell B, Golden M, Khoosa A, Muhire B (2015) RDP4: detection and analysis of recombination patterns in virus genomes. Virus Evol 1:vev003CrossRefPubMedPubMedCentral Martin D, Murrell B, Golden M, Khoosa A, Muhire B (2015) RDP4: detection and analysis of recombination patterns in virus genomes. Virus Evol 1:vev003CrossRefPubMedPubMedCentral
15.
Zurück zum Zitat Muhire BM, Varsani A, Martin DP (2014) SDT: a virus classification tool based on pairwise sequence alignment and identity calculation. PLoS One 9:e108277CrossRefPubMedPubMedCentral Muhire BM, Varsani A, Martin DP (2014) SDT: a virus classification tool based on pairwise sequence alignment and identity calculation. PLoS One 9:e108277CrossRefPubMedPubMedCentral
16.
Zurück zum Zitat Rojas MA, Gilbertson RL, Russell DR, Maxwell DP (1993) Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminiviruses. Plant Dis 77:340–347CrossRef Rojas MA, Gilbertson RL, Russell DR, Maxwell DP (1993) Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminiviruses. Plant Dis 77:340–347CrossRef
17.
Zurück zum Zitat Rojas A, Kvarnheden A, Marcenaro D, Valkonen JP (2005) Sequence characterization of tomato leaf curl Sinaloa virus and tomato severe leaf curl virus: phylogeny of New World begomoviruses and detection of recombination. Arch Virol 150:1281–1299CrossRefPubMed Rojas A, Kvarnheden A, Marcenaro D, Valkonen JP (2005) Sequence characterization of tomato leaf curl Sinaloa virus and tomato severe leaf curl virus: phylogeny of New World begomoviruses and detection of recombination. Arch Virol 150:1281–1299CrossRefPubMed
18.
Zurück zum Zitat Romay G, Geraud-Pouey F, Chirinos DT, Morales F, Herrera E, Fernández C, Martínez AK (2010) Transmisión del tomato Venezuela virus por Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae), en Maracaibo, Venezuela. Neotrop Entomol 39:266–274CrossRefPubMed Romay G, Geraud-Pouey F, Chirinos DT, Morales F, Herrera E, Fernández C, Martínez AK (2010) Transmisión del tomato Venezuela virus por Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae), en Maracaibo, Venezuela. Neotrop Entomol 39:266–274CrossRefPubMed
19.
Zurück zum Zitat Romay G, Geraud-Pouey F, Chirinos D, Demey J (2016) Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae): Historia, situación actual y su rol como vector de enfermedades virales de plantas en Venezuela. Entomotropica 31:276–293 Romay G, Geraud-Pouey F, Chirinos D, Demey J (2016) Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae): Historia, situación actual y su rol como vector de enfermedades virales de plantas en Venezuela. Entomotropica 31:276–293
20.
Zurück zum Zitat Samuels J (2015) Biodiversity of food species of the Solanaceae family: a preliminary taxonomic inventory of subfamily Solanoideae. Resources 4:277–322CrossRef Samuels J (2015) Biodiversity of food species of the Solanaceae family: a preliminary taxonomic inventory of subfamily Solanoideae. Resources 4:277–322CrossRef
21.
Zurück zum Zitat Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729CrossRefPubMedPubMedCentral Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729CrossRefPubMedPubMedCentral
22.
Zurück zum Zitat Zambrano K, Geraud-Pouey F, Chirinos D, Romay G, Marys E (2011) Tomato chlorotic leaf distortion virus, a new bipartite begomovirus infecting Solanum lycopersicum and Capsicum chinense in Venezuela. Arch Virol 56:2263–22636CrossRef Zambrano K, Geraud-Pouey F, Chirinos D, Romay G, Marys E (2011) Tomato chlorotic leaf distortion virus, a new bipartite begomovirus infecting Solanum lycopersicum and Capsicum chinense in Venezuela. Arch Virol 56:2263–22636CrossRef
Metadaten
Titel
Complete genome sequence of two tomato-infecting begomoviruses in Venezuela: evidence of a putative novel species and a novel recombinant strain
verfasst von
Gustavo Romay
Dorys T. Chirinos
Francis Geraud-Pouey
Annika Gillis
Jacques Mahillon
Claude Bragard
Publikationsdatum
20.10.2017
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 2/2018
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-017-3611-y

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