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Erschienen in: Archives of Virology 7/2017

23.03.2017 | Annotated Sequence Record

Complete genome sequences of cowpea polerovirus 1 and cowpea polerovirus 2 infecting cowpea plants in Burkina Faso

verfasst von: Essowè Palanga, Darren P. Martin, Serge Galzi, Jean Zabré, Zakaria Bouda, James Bouma Neya, Mahamadou Sawadogo, Oumar Traore, Michel Peterschmitt, Philippe Roumagnac, Denis Filloux

Erschienen in: Archives of Virology | Ausgabe 7/2017

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Abstract

The full-length genome sequences of two novel poleroviruses found infecting cowpea plants, cowpea polerovirus 1 (CPPV1) and cowpea polerovirus 2 (CPPV2), were determined using overlapping RT-PCR and RACE-PCR. Whereas the 5845-nt CPPV1 genome was most similar to chickpea chlorotic stunt virus (73% identity), the 5945-nt CPPV2 genome was most similar to phasey bean mild yellow virus (86% identity). The CPPV1 and CPPV2 genomes both have a typical polerovirus genome organization. Phylogenetic analysis of the inferred P1-P2 and P3 amino acid sequences confirmed that CPPV1 and CPPV2 are indeed poleroviruses. Four apparently unique recombination events were detected within a dataset of 12 full polerovirus genome sequences, including two events in the CPPV2 genome. Based on the current species demarcation criteria for the family Luteoviridae, we tentatively propose that CPPV1 and CPPV2 should be considered members of novel polerovirus species.
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Literatur
1.
Zurück zum Zitat Chen S, Jiang G, Wu J, Liu Y, Qian Y, Zhou X (2016) Characterization of a novel polerovirus infecting maize in China. Viruses 8(120):1–17 Chen S, Jiang G, Wu J, Liu Y, Qian Y, Zhou X (2016) Characterization of a novel polerovirus infecting maize in China. Viruses 8(120):1–17
2.
Zurück zum Zitat Domier LL, D’Arcy CJ (2010) Luteoviruses. In: Mahy BWJ, Van Regenmortel MHV (eds) Desk encyclopedia of plant and fungal virology. Academic, Oxford, pp 197–204 Domier LL, D’Arcy CJ (2010) Luteoviruses. In: Mahy BWJ, Van Regenmortel MHV (eds) Desk encyclopedia of plant and fungal virology. Academic, Oxford, pp 197–204
3.
Zurück zum Zitat Domier LL (2012) Family Luteoviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy: ninth report of the International Committee on the Taxonomy of Viruses. Elsevier Academic Press, Amsterdam, pp 1045–1053 Domier LL (2012) Family Luteoviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy: ninth report of the International Committee on the Taxonomy of Viruses. Elsevier Academic Press, Amsterdam, pp 1045–1053
4.
Zurück zum Zitat Guindon S, Dufayard J-F, Lefort V, Anisimova M, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59:307–321CrossRefPubMed Guindon S, Dufayard J-F, Lefort V, Anisimova M, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59:307–321CrossRefPubMed
5.
Zurück zum Zitat Knierim D, Tsai WS, Deng TC, Green SK, Kenyon L (2013) Full-length genome sequences of four polerovirus isolates infecting cucurbits in Taiwan determined from total RNA extracted from field samples. Plant Pathol 62:633–641CrossRef Knierim D, Tsai WS, Deng TC, Green SK, Kenyon L (2013) Full-length genome sequences of four polerovirus isolates infecting cucurbits in Taiwan determined from total RNA extracted from field samples. Plant Pathol 62:633–641CrossRef
6.
Zurück zum Zitat Knierim D, Maiss E, Menzel W, Winter S, Kenyon L (2015) Characterization of the complete genome of a novel Polerovirus infecting Sauropus androgynus in Thailand. J Phytopathol 163:695–702CrossRef Knierim D, Maiss E, Menzel W, Winter S, Kenyon L (2015) Characterization of the complete genome of a novel Polerovirus infecting Sauropus androgynus in Thailand. J Phytopathol 163:695–702CrossRef
7.
Zurück zum Zitat Lotos L, Maliogka VI, Katis NI (2016) New poleroviruses associated with yellowing symptoms in different vegetable crops in Greece. Arch Virol 161:431–436CrossRefPubMed Lotos L, Maliogka VI, Katis NI (2016) New poleroviruses associated with yellowing symptoms in different vegetable crops in Greece. Arch Virol 161:431–436CrossRefPubMed
8.
Zurück zum Zitat Martin DP, Murrell B, Golden M, Khoosal A, Muhire B (2015) RDP4: detection and analysis of recombination patterns in virus genomes. Virus Evolution 1(1):1–5CrossRef Martin DP, Murrell B, Golden M, Khoosal A, Muhire B (2015) RDP4: detection and analysis of recombination patterns in virus genomes. Virus Evolution 1(1):1–5CrossRef
11.
Zurück zum Zitat Palanga E, Filloux D, Martin DP, Fernandez E, Gargani D, Ferdinand R, Zabre J, Bouda Z, Neya JB, Sawadogo M, Traore O, Peterschmitt M, Roumagnac P (2016) Metagenomic-based screening and molecular characterization of cowpea-infecting viruses in Burkina Faso. PLoS One 11(10):e0165188CrossRefPubMedPubMedCentral Palanga E, Filloux D, Martin DP, Fernandez E, Gargani D, Ferdinand R, Zabre J, Bouda Z, Neya JB, Sawadogo M, Traore O, Peterschmitt M, Roumagnac P (2016) Metagenomic-based screening and molecular characterization of cowpea-infecting viruses in Burkina Faso. PLoS One 11(10):e0165188CrossRefPubMedPubMedCentral
12.
Zurück zum Zitat Smirnova E, Firth AE, Miller WA, Scheidecker D, Brault V, Reinbold C, Rakotondrafara AM, Chung BY-W, Ziegler-Graff V (2015) Discovery of a small non-AUG-initiated ORF in poleroviruses and luteoviruses that is required for long-distance movement. PLoS Pathog 11(5):e1004868CrossRefPubMedPubMedCentral Smirnova E, Firth AE, Miller WA, Scheidecker D, Brault V, Reinbold C, Rakotondrafara AM, Chung BY-W, Ziegler-Graff V (2015) Discovery of a small non-AUG-initiated ORF in poleroviruses and luteoviruses that is required for long-distance movement. PLoS Pathog 11(5):e1004868CrossRefPubMedPubMedCentral
13.
Zurück zum Zitat Stevens M, Freeman B, Liu HY, Herrbach E, Lemaire O (2005) Beet poleroviruses: close friends or distant relatives? Mol Plant Pathol 6:1–9CrossRefPubMed Stevens M, Freeman B, Liu HY, Herrbach E, Lemaire O (2005) Beet poleroviruses: close friends or distant relatives? Mol Plant Pathol 6:1–9CrossRefPubMed
14.
Zurück zum Zitat Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729CrossRefPubMedPubMedCentral Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729CrossRefPubMedPubMedCentral
Metadaten
Titel
Complete genome sequences of cowpea polerovirus 1 and cowpea polerovirus 2 infecting cowpea plants in Burkina Faso
verfasst von
Essowè Palanga
Darren P. Martin
Serge Galzi
Jean Zabré
Zakaria Bouda
James Bouma Neya
Mahamadou Sawadogo
Oumar Traore
Michel Peterschmitt
Philippe Roumagnac
Denis Filloux
Publikationsdatum
23.03.2017
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 7/2017
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-017-3327-z

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