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Erschienen in: Japanese Journal of Radiology 9/2018

07.07.2018 | Original Article

Denoising of 3D magnetic resonance images with multi-channel residual learning of convolutional neural network

verfasst von: Dongsheng Jiang, Weiqiang Dou, Luc Vosters, Xiayu Xu, Yue Sun, Tao Tan

Erschienen in: Japanese Journal of Radiology | Ausgabe 9/2018

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Abstract

Purpose

To test if the proposed deep learning based denoising method denoising convolutional neural networks (DnCNN) with residual learning and multi-channel strategy can denoise three dimensional MR images with Rician noise robustly.

Materials and methods

Multi-channel DnCNN (MCDnCNN) method with two training strategies was developed to denoise MR images with and without a specific noise level, respectively. To evaluate our method, three datasets from two public data sources of IXI dataset and Brainweb, including T1 weighted MR images acquired at 1.5 and 3 T as well as MR images simulated with a widely used MR simulator, were randomly selected and artificially added with different noise levels ranging from 1 to 15%. For comparison, four other state-of-the-art denoising methods were also tested using these datasets.

Results

In terms of the highest peak-signal-to-noise-ratio and global of structure similarity index, our proposed MCDnCNN model for a specific noise level showed the most robust denoising performance in all three datasets. Next to that, our general noise-applicable model also performed better than the rest four methods in two datasets. Furthermore, our training model showed good general applicability.

Conclusion

Our proposed MCDnCNN model has been demonstrated to robustly denoise three dimensional MR images with Rician noise.
Literatur
1.
2.
Zurück zum Zitat Chang L, ChaoBang G, Xi Y. A MRI denoising method based on 3D nonlocal means and multidimensional PCA. Comput Math Methods Med. 2015;2015:232389.PubMedPubMedCentral Chang L, ChaoBang G, Xi Y. A MRI denoising method based on 3D nonlocal means and multidimensional PCA. Comput Math Methods Med. 2015;2015:232389.PubMedPubMedCentral
3.
Zurück zum Zitat Zhang X, Xu Z, Jia N, et al. Denoising of 3D magnetic resonance images by using higher-order singular value decomposition. Med Image Anal. 2015;19(1):75–86.CrossRefPubMed Zhang X, Xu Z, Jia N, et al. Denoising of 3D magnetic resonance images by using higher-order singular value decomposition. Med Image Anal. 2015;19(1):75–86.CrossRefPubMed
4.
Zurück zum Zitat Manjon JV, Coupe P, Buades A. MRI noise estimation and denoising using non-local PCA. Med Image Anal. 2015;22(1):35–47.CrossRefPubMed Manjon JV, Coupe P, Buades A. MRI noise estimation and denoising using non-local PCA. Med Image Anal. 2015;22(1):35–47.CrossRefPubMed
6.
Zurück zum Zitat Bhujle HV, Chaudhuri S. Laplacian based non-local means denoising of MR images with rician noise. Magn Reson Imaging. 2013;31(9):1599–610.CrossRefPubMed Bhujle HV, Chaudhuri S. Laplacian based non-local means denoising of MR images with rician noise. Magn Reson Imaging. 2013;31(9):1599–610.CrossRefPubMed
7.
Zurück zum Zitat Chang YN, Chang HH. Automatic brain MR image denoising based on texture feature-based artificial neural networks. Biomed Mater Eng. 2015;26(Suppl 1):S1275–82.PubMed Chang YN, Chang HH. Automatic brain MR image denoising based on texture feature-based artificial neural networks. Biomed Mater Eng. 2015;26(Suppl 1):S1275–82.PubMed
8.
Zurück zum Zitat Golshan HM, Hasanzadeh RP. An optimized LMMSE based method for 3D MRI denoising. IEEE ACM Trans Comput Biol Bioinform. 2015;12(4):861–70.CrossRef Golshan HM, Hasanzadeh RP. An optimized LMMSE based method for 3D MRI denoising. IEEE ACM Trans Comput Biol Bioinform. 2015;12(4):861–70.CrossRef
9.
Zurück zum Zitat Varadarajan D, Haldar JP. A majorize-minimize framework for Rician and non-central chi MR images. IEEE Trans Med Imaging. 2015;34(10):2191–202.CrossRefPubMedPubMedCentral Varadarajan D, Haldar JP. A majorize-minimize framework for Rician and non-central chi MR images. IEEE Trans Med Imaging. 2015;34(10):2191–202.CrossRefPubMedPubMedCentral
10.
Zurück zum Zitat Zhang K, Zuo W, Chen Y, Meng D, Zhang L. Beyond a Gaussian denoiser: residual learning of deep CNN for image denoising. IEEE Trans Image Process. 2017;26(7):3142–55.CrossRefPubMed Zhang K, Zuo W, Chen Y, Meng D, Zhang L. Beyond a Gaussian denoiser: residual learning of deep CNN for image denoising. IEEE Trans Image Process. 2017;26(7):3142–55.CrossRefPubMed
12.
Zurück zum Zitat Coupe P, Yger P, Prima S, Hellier P, Kervrann C, Barillot C. An optimized blockwise nonlocal means denoising filter for 3D magnetic resonance images. IEEE Trans Med Imaging. 2008;27(4):425–41.CrossRefPubMedPubMedCentral Coupe P, Yger P, Prima S, Hellier P, Kervrann C, Barillot C. An optimized blockwise nonlocal means denoising filter for 3D magnetic resonance images. IEEE Trans Med Imaging. 2008;27(4):425–41.CrossRefPubMedPubMedCentral
13.
14.
Zurück zum Zitat Manjon JV, Coupe P, Buades A, Louis Collins D, Robles M. New methods for MRI denoising based on sparseness and self-similarity. Med Image Anal. 2012;16(1):18–27.CrossRefPubMed Manjon JV, Coupe P, Buades A, Louis Collins D, Robles M. New methods for MRI denoising based on sparseness and self-similarity. Med Image Anal. 2012;16(1):18–27.CrossRefPubMed
16.
Zurück zum Zitat Zhang X, Hou G, Ma J, et al. Denoising MR images using non-local means filter with combined patch and pixel similarity. PLoS One. 2014;9(6):e100240.CrossRefPubMedPubMedCentral Zhang X, Hou G, Ma J, et al. Denoising MR images using non-local means filter with combined patch and pixel similarity. PLoS One. 2014;9(6):e100240.CrossRefPubMedPubMedCentral
17.
Zurück zum Zitat Aksam Iftikhar M, Jalil A, Rathore S, Hussain M. Robust brain mri denoising and segmentation using enhanced non-local means algorithm. Int J Imaging Syst Technol. 2014;24(1):52–66.CrossRef Aksam Iftikhar M, Jalil A, Rathore S, Hussain M. Robust brain mri denoising and segmentation using enhanced non-local means algorithm. Int J Imaging Syst Technol. 2014;24(1):52–66.CrossRef
18.
Zurück zum Zitat Gudbjartsson H, Patz S. The Rician distribution of noisy MRI data. Magn Reson Med. 1995;34(6):910–4 [Erratum in: Magn Reson Med 1996;36(2):332].CrossRefPubMedPubMedCentral Gudbjartsson H, Patz S. The Rician distribution of noisy MRI data. Magn Reson Med. 1995;34(6):910–4 [Erratum in: Magn Reson Med 1996;36(2):332].CrossRefPubMedPubMedCentral
19.
Zurück zum Zitat Konishi Y, Kanazawa Y, Usuda T, Matsumoto Y, Hayashi H, Matsuda T, Ueno J, Harada M. Simple noise reduction for diffusion weighted images. Radiol Phys Technol. 2016;9(2):221–6.CrossRefPubMed Konishi Y, Kanazawa Y, Usuda T, Matsumoto Y, Hayashi H, Matsuda T, Ueno J, Harada M. Simple noise reduction for diffusion weighted images. Radiol Phys Technol. 2016;9(2):221–6.CrossRefPubMed
Metadaten
Titel
Denoising of 3D magnetic resonance images with multi-channel residual learning of convolutional neural network
verfasst von
Dongsheng Jiang
Weiqiang Dou
Luc Vosters
Xiayu Xu
Yue Sun
Tao Tan
Publikationsdatum
07.07.2018
Verlag
Springer Japan
Erschienen in
Japanese Journal of Radiology / Ausgabe 9/2018
Print ISSN: 1867-1071
Elektronische ISSN: 1867-108X
DOI
https://doi.org/10.1007/s11604-018-0758-8

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