Skip to main content
Erschienen in: Archives of Virology 3/2018

15.12.2017 | Original Article

Diverse replication-associated protein encoding circular DNA viruses in guano samples of Central-Eastern European bats

verfasst von: Gábor Kemenesi, Kornélia Kurucz, Brigitta Zana, Fanni Földes, Péter Urbán, Anton Vlaschenko, Kseniia Kravchenko, Ivana Budinski, Farkas Szodoray-Parádi, Szilárd Bücs, Csaba Jére, István Csősz, Abigél Szodoray-Parádi, Péter Estók, Tamás Görföl, Sándor Boldogh, Ferenc Jakab

Erschienen in: Archives of Virology | Ausgabe 3/2018

Einloggen, um Zugang zu erhalten

Abstract

Circular replication-associated protein encoding single-stranded DNA (CRESS DNA) viruses are increasingly recognized worldwide in a variety of samples. Representative members include well-described veterinary pathogens with worldwide distribution, such as porcine circoviruses or beak and feather disease virus. In addition, numerous novel viruses belonging to the family Circoviridae with unverified pathogenic roles have been discovered in different human samples. Viruses of the family Genomoviridae have also been described as being highly abundant in different faecal and environmental samples, with case reports showing them to be suspected pathogens in human infections. In order to investigate the genetic diversity of these viruses in European bat populations, we tested guano samples from Georgia, Hungary, Romania, Serbia and Ukraine. This resulted in the detection of six novel members of the family Circoviridae and two novel members of the family Genomoviridae. Interestingly, a gemini-like virus, namely niminivirus, which was originally found in raw sewage samples in Nigeria, was also detected in our samples. We analyzed the nucleotide composition of members of the family Circoviridae to determine the possible host origins of these viruses. This study provides the first dataset on CRESS DNA viruses of European bats, and members of several novel viral species were discovered.
Anhänge
Nur mit Berechtigung zugänglich
Literatur
2.
Zurück zum Zitat Kemenesi G, Dallos B, Görföl T, Boldogh S, Estók P, Kurucz K, Kutas A, Földes F, Oldal M, Németh V, Martella V, Bányai K, Jakab F (2014) Molecular survey of RNA viruses in Hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses. Vector Borne Zoonotic Dis 14:846–855. https://doi.org/10.1089/vbz.2014.1637 CrossRefPubMed Kemenesi G, Dallos B, Görföl T, Boldogh S, Estók P, Kurucz K, Kutas A, Földes F, Oldal M, Németh V, Martella V, Bányai K, Jakab F (2014) Molecular survey of RNA viruses in Hungarian bats: discovering novel astroviruses, coronaviruses, and caliciviruses. Vector Borne Zoonotic Dis 14:846–855. https://​doi.​org/​10.​1089/​vbz.​2014.​1637 CrossRefPubMed
8.
11.
Zurück zum Zitat Ge X, Li J, Peng C, Wu L, Yang X, Wu Y, Zhang Y, Shi Z (2011) Genetic diversity of novel circular ssDNA viruses in bats in China. J Gen Virol 92:2646–2653CrossRefPubMed Ge X, Li J, Peng C, Wu L, Yang X, Wu Y, Zhang Y, Shi Z (2011) Genetic diversity of novel circular ssDNA viruses in bats in China. J Gen Virol 92:2646–2653CrossRefPubMed
14.
Zurück zum Zitat Rosario K, Duffy S, Breitbart M (2012) A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics. Arch Virol 157:1851–1871CrossRefPubMed Rosario K, Duffy S, Breitbart M (2012) A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics. Arch Virol 157:1851–1871CrossRefPubMed
16.
Zurück zum Zitat Rosario K, Breitbart M, Harrach B, Segalés J, Delwart E, Biagini P, Varsani A (2017) Revisiting the taxonomy of the family Circoviridae: establisment of the genus Cyclovirus and removal of the genus Gyrovirus. Arch Virol 162:1447–1463CrossRefPubMed Rosario K, Breitbart M, Harrach B, Segalés J, Delwart E, Biagini P, Varsani A (2017) Revisiting the taxonomy of the family Circoviridae: establisment of the genus Cyclovirus and removal of the genus Gyrovirus. Arch Virol 162:1447–1463CrossRefPubMed
18.
Zurück zum Zitat Varsani A, Krupovic A (2017) Sequence-based taxonomic framework for the classification of uncultured single-stranded DNA viruses of the family Genomoviridae. Virus Evolution 3:vew037CrossRefPubMedPubMedCentral Varsani A, Krupovic A (2017) Sequence-based taxonomic framework for the classification of uncultured single-stranded DNA viruses of the family Genomoviridae. Virus Evolution 3:vew037CrossRefPubMedPubMedCentral
20.
Zurück zum Zitat Kunz TH, Hodgkison R, Weise CD (2009) Methods of capturing and handling bats. In: Kunz T, Parsons S (eds) Ecological and behavioral methods for the study of bats, 2nd edn. Johns Hopkins University Press, Baltimore, pp 3–35 Kunz TH, Hodgkison R, Weise CD (2009) Methods of capturing and handling bats. In: Kunz T, Parsons S (eds) Ecological and behavioral methods for the study of bats, 2nd edn. Johns Hopkins University Press, Baltimore, pp 3–35
24.
Zurück zum Zitat Buchfink B, Xie C, Huson DH (2015) Fast and sensitive protein alignment using DIAMOND. Nat Methods 12:59–60CrossRefPubMed Buchfink B, Xie C, Huson DH (2015) Fast and sensitive protein alignment using DIAMOND. Nat Methods 12:59–60CrossRefPubMed
25.
Zurück zum Zitat Huson DH, Beier S, Flade I, Górska A, El-Hadidi M, Mitra S, Ruscheweyh HJ, Tappu R (2016) MEGAN community edition—interactive exploration and analysis of large-scale microbiome sequencing data. PLoS Comput Biol 12:e1004957CrossRefPubMedPubMedCentral Huson DH, Beier S, Flade I, Górska A, El-Hadidi M, Mitra S, Ruscheweyh HJ, Tappu R (2016) MEGAN community edition—interactive exploration and analysis of large-scale microbiome sequencing data. PLoS Comput Biol 12:e1004957CrossRefPubMedPubMedCentral
26.
Zurück zum Zitat Li L, Kapoor A, Slikas B, Bamidele OS, Wang CL, Shaukat S, Masroor MA, Wilson ML, Ndjango JBN, Peeters M, Gross-Camp ND, Muller MN, Hahn BH, Wolfe ND, Triki H, Bartkus J, Zaidi SZ, Delwart E (2010) Multiple Diverse Circoviruses infect farm animals and are commonly found in human and chimpanzee feces. J Virol 84:1674–1682. https://doi.org/10.1128/JVI.02109-09 CrossRefPubMed Li L, Kapoor A, Slikas B, Bamidele OS, Wang CL, Shaukat S, Masroor MA, Wilson ML, Ndjango JBN, Peeters M, Gross-Camp ND, Muller MN, Hahn BH, Wolfe ND, Triki H, Bartkus J, Zaidi SZ, Delwart E (2010) Multiple Diverse Circoviruses infect farm animals and are commonly found in human and chimpanzee feces. J Virol 84:1674–1682. https://​doi.​org/​10.​1128/​JVI.​02109-09 CrossRefPubMed
27.
Zurück zum Zitat Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Mentjies P, Drummond A (2012) Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28:1647–1649CrossRefPubMedPubMedCentral Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Mentjies P, Drummond A (2012) Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28:1647–1649CrossRefPubMedPubMedCentral
29.
Zurück zum Zitat Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59:307–321CrossRefPubMed Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59:307–321CrossRefPubMed
30.
Zurück zum Zitat Charif D, Lobry JR (2007) SeqinR 1.0-2: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis. Structural approaches to sequence evolution: molecules, networks, populations. http://cran.R-project.org/package=seqinr. Accessed 30 June 2016 Charif D, Lobry JR (2007) SeqinR 1.0-2: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis. Structural approaches to sequence evolution: molecules, networks, populations. http://​cran.​R-project.​org/​package=​seqinr. Accessed 30 June 2016
31.
Zurück zum Zitat R Development Core Team (2015) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http://www.R-project.org. Accessed 30 June 2016 R Development Core Team (2015) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http://​www.​R-project.​org. Accessed 30 June 2016
32.
Zurück zum Zitat IBM Corp. Released (2016) IBM SPSS statistics for windows, Version 24.0. Armonk, NY, IBM Corp IBM Corp. Released (2016) IBM SPSS statistics for windows, Version 24.0. Armonk, NY, IBM Corp
33.
Zurück zum Zitat Kraberger S, Argüello-Astorga GR, Greenfield LG, Galilee C, Law D, Martin DP, Varsani A (2015) Characterisation of a diverse range of circular replication-associated protein encoding DNA viruses recovered from a sewage treatment oxidation pond. Infect Genet Evol 31:73–86CrossRefPubMed Kraberger S, Argüello-Astorga GR, Greenfield LG, Galilee C, Law D, Martin DP, Varsani A (2015) Characterisation of a diverse range of circular replication-associated protein encoding DNA viruses recovered from a sewage treatment oxidation pond. Infect Genet Evol 31:73–86CrossRefPubMed
35.
Zurück zum Zitat Zhang T, Breitbart M, Lee WH, Run JQ, Wei CL, Soh SW, Hibberd ML, Liu ET, Rohwer F, Ruan Y (2006) RNA viral community in human feces: prevalence of plant pathogenic viruses. PLoS Biol 4:108–118CrossRef Zhang T, Breitbart M, Lee WH, Run JQ, Wei CL, Soh SW, Hibberd ML, Liu ET, Rohwer F, Ruan Y (2006) RNA viral community in human feces: prevalence of plant pathogenic viruses. PLoS Biol 4:108–118CrossRef
41.
Zurück zum Zitat le Tan V, van Doorn HR, Nghia HD, Chau TT, le Tu TP, de Vries M, Canuti M, Deijs M, Jebbink MF, Baker S, Bryant JE, Tham NT, Krong NT, Boni MF, Loi TQ, le Phuong T, Verhoeven JT, Crusat M, Jeeninga RE, Schultsz C, Chau NV, Hien TT, van der Hoek L, Farrar J, de Jong MD (2013) Identification of a new cyclovirus in cerebrospinal fluid of patients with acute central nervous system infections. MBio 4:e00231-13. https://doi.org/10.1128/mBio.00231-13 CrossRefPubMedPubMedCentral le Tan V, van Doorn HR, Nghia HD, Chau TT, le Tu TP, de Vries M, Canuti M, Deijs M, Jebbink MF, Baker S, Bryant JE, Tham NT, Krong NT, Boni MF, Loi TQ, le Phuong T, Verhoeven JT, Crusat M, Jeeninga RE, Schultsz C, Chau NV, Hien TT, van der Hoek L, Farrar J, de Jong MD (2013) Identification of a new cyclovirus in cerebrospinal fluid of patients with acute central nervous system infections. MBio 4:e00231-13. https://​doi.​org/​10.​1128/​mBio.​00231-13 CrossRefPubMedPubMedCentral
Metadaten
Titel
Diverse replication-associated protein encoding circular DNA viruses in guano samples of Central-Eastern European bats
verfasst von
Gábor Kemenesi
Kornélia Kurucz
Brigitta Zana
Fanni Földes
Péter Urbán
Anton Vlaschenko
Kseniia Kravchenko
Ivana Budinski
Farkas Szodoray-Parádi
Szilárd Bücs
Csaba Jére
István Csősz
Abigél Szodoray-Parádi
Péter Estók
Tamás Görföl
Sándor Boldogh
Ferenc Jakab
Publikationsdatum
15.12.2017
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 3/2018
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-017-3678-5

Weitere Artikel der Ausgabe 3/2018

Archives of Virology 3/2018 Zur Ausgabe

Leitlinien kompakt für die Innere Medizin

Mit medbee Pocketcards sicher entscheiden.

Seit 2022 gehört die medbee GmbH zum Springer Medizin Verlag

Update Innere Medizin

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.