The PR protocol will be performed three times a week for 10 consecutive weeks. All activities will be supervised by a previously trained respiratory therapist in a room with a controlled temperature set between 23 and 26 °C. All individuals will be instructed to perform the rehabilitation program 5 days a week — 3 days with supervision and 2 without supervision — for at least one hour a day, according to the recommendations of the guideline on PR in adults [
13]. Subjects will receive orientation to fill in the unsupervised exercise diary regarding type of exercise, duration, and frequency as well as for symptoms referenced during the activity using the modified Borg scale (from 4 to 6) to limit the intensity of the exercise [
14].
All three groups will submit to a conventional rehabilitation program consisting of aerobic exercise on a treadmill. For the first week, the subjects will perform 20 min of activity. A resting period lasting 2 min maximum will be allowed whenever requested by the subject. The training time will be increased after the 5th week to reach 30 min of daily activity [
15]. Aerobic exercise will be performed on a treadmill, with a velocity corresponding to 70% of the maximum velocity achieved in the Incremental Shuttle Walking Test (ISWT) [
16]. Ten percent of the starting time (2–3 min) of the training will be at a speed of 40% of the maximum speed reached in the ISWT for heating, 80% of the training time (17–25 min) will be at the target speed (70% ISWT), and the remaining 10% of the time will be cooling, with the same speed as for heating, reducing the speed to zero at the end of the training period [
17,
18]. The physical activity training will be interrupted whenever the degree of dyspnea sensation reaches 4–6 (intense) on the Borg scale [
14] or the heart rate (HR) exceeds 85% of the individual maximum HR value (220 – age). If the saturation drops (SpO
2 < 90%) [
19] during the exercise, we will administer supplemental oxygen at minimal flow with a nasal cannula to maintain higher than 90% saturation. The patients will be monitored every 5 min. Participants will be instructed to maintain aerobic activities on days that they are not performing the supervised PR program. Strength training for lower and upper limb muscles will be performed through a program consisting of 3 sets of 12 repetitions, initially using 60% of 1 maximal repetition (1RM), and this load will be increased to 70% by the 5th week and 80% in the 8th week of training [
20]. For the upper limbs the training will be directed to the biceps, triceps, pectoral, and deltoid muscles, and for the lower limbs, the training will be for quadriceps and triceps femoris [
3]. Guidance in energy conservation techniques as well as educational speeches regarding self-management of the disease will be provided [
13]. The PRWIMT group will perform PR and IMT without any load; the PRIMTLL group will perform PR and IMT with a linear load; the PRIMTIVH group will perform PR and IMT with isocapnic voluntary hyperpnea.