Background
Viruses generally enter cells via receptor-mediated endocytosis. The well-characterized clathrin-mediated endocytosis (CME) is the commonly used endocytic pathways for internalization of ligands, such as transferrin and epidermal growth factor [
1], and many viruses, including type C foot-and-mouth disease virus [
2] and echovirus 7 [
3]. CME involves internalization of virus to be recruited to the plasma membrane through the formation of a clathrin coat [
4]. The generated coated vesicles then deliver the virus particles into peripheral early endosomes, late endosomes and lysosomes.
Additionally, cells employ a number of alternative endocytic pathways resulting in processing outside the traditional CME. Among them, caveolae/raft dependent endocytosis is another well-characterized pathway. Caveolae, flask-shaped invaginations characterized by enrichment of caveolin-1 protein, could be used by cells to achieve rapid trafficking of external cargo to the endoplasmic reticulum or Golgi [
5]. Caveolae are exploited by the simian virus 40 for trafficking to the endoplasmic reticulum independent of CME [
6]. Echovirus, a nonenveloped RNA virus, enters into caco-2 cells via large, membranous, non-clathrin, non-caveolin-coated structures for distinct processing that depends on dynamin and cholesterol [
7]. Murine norovirus-1 can also infect cells through non-clathrin and non-caveolae pathways [
8]. Another mode of virus entry is by constitutive or induced macropinocytosis [
9,
10], which depends on small GTPases of the Rho family and actin remodeling to promote formation of cell surface extrusions [
11,
12].
Porcine sapelovirus (PSV) is a single-stranded, non-enveloped RNA virus, belonging to the genus of sapelovirus in the family Picornaviridae, and it is strongly associated with acute diarrhea, polioencephalomyelitis, pneumonia and reproductive disorders [
13,
14]. PSV was first isolated from diarrheal pigs in China [
13] and from wild boar in Japanese [
15] in 2011 and was subsequently detected in pig diarrhea fecal samples throughout Spain, Korea, Brazil, and the Americas [
14,
16‐
18], causing high morbidity and case fatality rate in the USA [
14]. At present, researches on PSV are mainly about genomic characterization [
19‐
21] and epidemiology [
22]. Although α2,3-linked sialic acid on GD1a as a PSV receptor in LLC-PK1 cells has been found [
22], research on the mechanism underlying the pathogenesis, replication, and entry of PSV has not yet been well established.
Different picornaviruses use a variety of entry routes into host cells, including CME, caveolae, and lipid rafts [
23,
24]. In the current study, we addressed PSV entry into porcine small intestinal epithelial cell (IPEC-J2) by systematically perturbing the function of various cellular key factors involved in the known endocytic mechanisms using chemical inhibitors, siRNA silencing, and overexpression of dominant negative (DN) mutants of caveolin-1, Eps15 and dynamin-2. Our results suggested that PSV entry was caveolin-, lipid raft-, and dynamin-dependent and did not involve the clathrin and macropinocytosis pathway. Additionally, the viruses underwent slow acid-dependent penetration.
Methods
Cells and virus
IPEC-J2 cells were cultured in RPMI 1640 medium (Gibco, USA), supplemented with 10% fetal bovine serum (FBS, Gibco) in 5% CO
2 at 37 °C. The PSV (csh) strain was isolated and preserved in our laboratory [
13]. Mouse polyclonal anti-PSV VP1 antibody was generated by our laboratory.
Inhibitors and cell viability assay
Inhibitors chlorpromazine (CPZ), ammonium chloride (NH4Cl), chloroquine (CQ), methyl-β-cyclodextrin (MβCD), nystatin, dynasore, 5-(N-ethyl-N-isopropyl) amiloride (EIPA), and wortmannin were purchased from Sigma, dissolved in water or DMSO and preserved in − 80 °C. Alexa Fluor 594-conjugated cholera toxin B (CTB) and Alexa Fluor 568-conjugated transferrin (Tfn) were purchased from Invitrogen (Carlsbad, CA, United States). Cell viability upon inhibitor treatment was assessed by employing the cell counting kit-8 (CCK-8, Beyotime Biotechnology, Shanghai, China). Briefly, cells were seeded in 96-well cell culture plates and subsequently treated with drugs at different concentrations for 24 h. After incubation with 10 μl CCK-8 for 2 h at 37 °C, the data of absorbance at a wavelength of 450 nm were collected.
Cell infection and drug treatments
IPEC-J2 cell monolayers were grown in 24-well plates. After washing with DPBS for three times, the cells were pre-treated with inhibitors at the indicated concentrations for 1 h at 37 °C. For virus entry and replication assay, PSV was then added (MOI = 0.5). After incubation for 1 h, the unbound virus was removed by three washes with DPBS, and fresh medium was added to the cells. At 24 hpi, cells were lysed for virus titers determined by TCID50 or VP1 protein expression levels assays detected by western blot.
Plasmids and siRNA transfection
Small interfering RNAs (siRNAs) against Sus scrofa clathrin heavy chain (siCHC-1, GCUCCAGAACCUGGGUAUATT; siCHC-2, GGAAGGAAAUGCAGAAGAATT), caveolin-1 (siCav, GCAAUAUCCGCAUCAACAUTT) and negative control (siNC, 5′-UUCUCCGAACGUGUCACGUTT-3′) were synthesized by GenePharma (Shanghai, China). IPEC-J2 cells were seeded on 24-well plates and transfected with siRNAs using lipofectamine 6000 (Beyotime Biotechnology) according to the manufacturer’s instructions. The knockdown efficiencies were quantified by RT-qPCR.
Plasmid expressing GFP-tagged Eps15 (WT), Eps15 (EpsΔ95/295), caveolin 1 wild type (Cav WT), caveolin 1 DN mutant (Y14F), dynamin-2 (WT) and dynamin-2 (K44A) were constructed by our laboratory and sequenced by Sangon (Shanghai, China). To determinate the infectivity of PSV in cells transfected with WT or DN mutant, IPEC-J2 cells grown on 24-well plates were fist transfected with 0.5 μg of plasmids for 24 h. Cells were then infected with PSV (MOI = 0.5), and virus replication was detected with western blot.
RT-qPCR and western blot
After siRNA transfection for 30 h, cells were lysed and total RNA was extracted using TRIzol (Invitrogen). The mRNA levels of clathrin heavy chains (CHC) and caveolin-1 were checked by RT-qPCR. RT-qPCR was conducted with SYBR green master mix on an ABI 7500 Real-Time PCR System and 7500 System Software (Applied Biosystems, Alameda, CA, USA). For western blot analysis, cells were lysed in RIPA lysis buffer. After being separated by SDS-PAGE, the proteins were electrotransferred onto PVDF membranes and then immunoblotted with mouse anti-PSV VP1 antibody (1:1000) and anti-mouse secondary antibodies conjugated to HRP (1:10,000). α-tubulin was used as a loading control. Finally, bands were developed with ECL prime western blot detection reagent (GE Healthcare), and then quantified with Image Pro-Plus software.
Tfn and CTB uptake assays
PK-15 cells seeded in 12-well plates with coverslips were left untreated or pretreated with indicated inhibitors for 1 h, and incubated with 50 μg/ml Alexa Fluor 568-conjugated Tfn or 10 μg/ml Alexa Fluor 594 conjugated-CTB at 37 °C for 60 min. Then, cells were washed with cold PBS for three times, fixed with cold 0.4% paraformaldehyde. Cell nuclei were stained with DAPI and cells were observed by confocal microscopy.
Virus titration
Inhibitor treated and mock-treated IPEC-J2 cells infected with PSV were harvested at 24 h post-infection through freezing and thawing for three times, and then centrifuged to remove cell debris. Confluent cell monolayers in 96-well cell culture plates were incubated at 37 °C for 1 h with 10-fold serial dilutions of collected virus (100 μl/well). About 4–5 days later, cytopathic effect was recorded and virus titers were calculated using the Reed-Muench method and recorded as TCID50/100 μl.
Statistical analysis
Data are presented as means ± SD for two independent experiments. All statistical analyses were performed using two-tailed student’s t-tests or one-way analysis of variance and Tukey post-hoc in GraphPad Prism. P < 0.05 was considered to be statistically significant.
Discussion
Virus internalization and entry into their target cells may use multiple pathways in different types of cells [
31]. To investigate the possibility of PSV uses multiple endocytic pathways in IPEC-J2 cells, systematic approaches were used, including pharmacological inhibition, RNA interference, and overexpression of DN mutant plasmids. We show here that PSV does not depend on CME or macropinocytic endocytosis. Instead, PSV enters IPEC-J2 cells via a caveolae/lipid raft pathway requiring dynamin and a low-pH environment. Understanding the trafficking pathway that PSV undergoes not only provides improved understanding of viral biology but also is crucial for finding drug targets.
In general, pH changes are not essential for virus entry through plasma membranes by direct fusion, whereas a low pH environment is required when viruses usurp cellular endocytic pathways [
32]. Virions are often exposed to the acidic milieu of endosomes merely within minutes following complete internalization. In some cases, acidic pH alone is insufficient to induce fusion for some viruses, including many mammalian reoviruses, and acid-dependent endosomal proteases mediated cleavages in viral proteins are essential for triggering the variation to the penetration-competent condition [
33]. The weak lysosomotropic bases that diffuse into acidic endosomes increase the endosomal pH, leading to inhibition of virus infection by human rhinovirus and equine rhinitis A virus [
34,
35]. Treatment with NH
4Cl or CQ that disrupt cellular pH decreased PSV titer and VP1 protein synthesis in a concentration-dependent manner, indicating a pH-dependent uptake mechanism.
The clathrin-mediated endocytic route is the most commonly used endocytic pathways taken by viruses. It transports incoming virions together with their receptors into early and late endosomes. CME is characterized by the formation of heavily coated pits at the plasma membrane indentations and the formation of characteristic clathrin-coated vesicles [
32,
36]. Here, we used CPZ, siRNA against EPS15 and EPS15 DN mutant fused to GFP to specifically block CME. Our results demonstrated that CPZ inhibited transferrin uptake, but did not decrease PSV titer or VP1 protein expression levels. Similarly, siRNA against EPS15 and EPS15 DN mutant transfection did not significantly alter PSV infection, indicating that PSV entry IPEC-J2 cells may be independent of CME.
Caveolae-mediated endocytosis is the major route of entry for foot-and-mouth disease virus, echovirus 1 [
37] and other viruses [
38,
39]. The feature of this pathway is its dependence on caveolin-1 in non-muscle cells [
40]. Caveolae endocytosis requires dynamin, which is located in the neck of caveolae either constitutively in endothelial cells [
41], or is recruited in response to specific signals [
6]. Cells treated with caveolae-mediated-endocytosis inhibitors became resistant to PSV entry, and caveolin-1 knockout as well as caveolin DN mutant transfection also inhibited virus infection. Together, these data indicate that caveolae/ lipid raft-mediated endocytosis is likely the main pathway used by PSV to enter IPEC-J2 cells.
Dynamin conduces to membrane fission to generate endocytic vesicles and is required for many endocytic pathways. Endocytic pathways can be divided into subpathways that are dependent on dynamin, including CME, caveolae-mediated endocytosis, and clathrin-independent dynamin-mediated pathways, and those that are not dependent on dynamin, which included macropinocytosis, lipid raft-mediated endocytosis, and non-clathrin/non-caveolae endocytosis [
11,
27,
42]. Our studies with the dynamin inhibitors dynasore and dynamin DN mutant indicate that PSV perhaps utilize a dynamin-mediated pathway.
Macropinocytosis is a transient, actin-dependent cellular process used by cells to internalize significant amounts of fluids and membrane [
43]. The process requires actin polymerization but does not dependent on dynamin. It has been verified to be used by vaccinia virus [
44] and measles virus [
45]. As NHE is essential for the formation of macropinocytic protrusions, we used the Na
+/H
+ inhibitor EIPA to detect the role of macropinocytosis in PSV entry. Treatment with 10 μM EIPA did not reduce the virus titer or VP1 protein synthesis, suggesting that the entry of PSV into IPEC-J2 cells may be independent of macropinocytosis. Wortmannin could inhibit members of the polo-like kinase family and PI3K-related kinases, including mTOR, ATR and the catalytic subunit of DNA-dependent protein kinase [
46‐
48]. Although our data imply that wortmannin could reduce PSV replication, the precise mechanism remains to be elucidated.
There are still some limitations in the present study. First, viruses enter different target cells may use different pathways. PSV could be cultivated in many cells, including pig cells (PK-15, IPEC-J2, IBRS-2 and LLC-PK) [
13,
22] and human hepatocarcinoma cell line (PLC/PRF/5 and HepG2/C3a) [
20]. We only used IPEC-J2 cells as the target cells and other alternative cell lines were beyond the scope of the current study. Second, the actin and microtubule cytoskeleton play crucial roles in endocytosis and intracellular trafficking, but the effect of inhibition of actin and microtubules on PSV infection was not performed. Third, specific effects of inhibitors treatment after PSV infection are unknown. Hence, further work is obligatory to solve those issues above in the future.