Background
Although a majority of patients with primary breast cancer are cured by locoregional treatment with or without systemic therapy, approximately 10–30% of these patients experience recurrence of the cancer [
1]. Researchers have suggested various biomarkers or risk categories of breast cancer to reliably identify high-risk patients, who would require chemotherapy, and low-risk patients, who can be treated without chemotherapy [
2]. Nodal status is the important prognostic and predictive factors in the treatment of primary breast cancer; however, there are still no definitive criteria that can identify high-risk patients with primary breast cancer, especially those with node-negative (pN0) breast cancer.
Currently, primary systemic therapy (PST) is widely practiced as a standard therapy for patients with early-stage breast cancer [
3], but it is difficult to preoperatively identify high-risk patients in the PST setting because available information obtained from core needle biopsy specimens is limited. Although molecular biology tools such as Oncotype DX™ or the 70-gene expression classifier identified by DNA microarray analysis (MammaPrint
®) are going to be used widely for risk evaluation, utility of these tools has not been confirmed with primary breast cancer in the PST setting [
4‐
6]. Therefore, we need new tools that can preoperatively and accurately predict the prognosis of patients with early-stage breast cancer.
FDG PET/CT is a noninvasive imaging device widely used for the detection and staging of breast cancer[
7]. FDG uptake on PET, quantified by the standardized uptake value (SUV), is a highly reproducible parameter of tumor glucose metabolism [
8].
We previously reported that high SUV levels (4.0 or more) in primary breast tumors significantly correlated with higher nuclear grades and poorer prognoses of primary breast tumors [
9]. We suggested that the tumoral SUV detected by FDG PET/CT could be a preoperative tool to predict high-risk patients with primary breast cancer.
In fact, primary cancers with high SUV detected by FDG PET/CT correlated with the parameters of rapid cellular proliferation, e.g., mitotic counts and Ki67 index, and exhibited poorer clinical outcome than those with low SUV. Such correlation was reported in various cancers, including non-small-cell lung cancer, ovarian cancer, and breast cancer [
10‐
13]. When novel prognostic molecules correlated with high SUV are identified, it might be very helpful for the accurate preoperative prediction of high-risk patients with early breast cancer.
The present study aimed at detecting novel candidate genes from primary breast cancers with high SUV. We compared mRNA expression profiles and protein expressions of several specific molecules between primary breast cancer with high SUV and those with low SUV by means of cDNA microarray and immunohistochemistry. We also evaluated whether the candidate genes identified by the cDNA microarray correlated with the clinical outcome. Furthermore, we discussed whether the SUV categories by FDG PET/CT are useful to predict tumor proliferation and to identify patients having high-risk primary breast cancer before the systemic therapy or surgery.
Methods
Patient characteristics
This study was approved by the institutional review committee of the National Defense Medical College, Japan. Informed consent was obtained from each eligible patient. Primary breast cancer was histopathologically diagnosed on a core needle biopsy. Patients who did not exhibit evidence of distant metastatic spread in results of X-ray, ultrasonography, or FDG PET/CT were eligible as operable candidates for the treatment of primary breast cancer. Pregnant patients, patients with a history of insulin-dependent diabetes mellitus from clinical notes, or those who had previously received treatment to breast cancer were excluded from assessment with FDG PET/CT. These patients did not receive any systemic therapy before surgery. FDG PET/CT examination was performed at an interval of 2 weeks or more after the core needle biopsy (CNB). All the patients underwent surgery within 6 weeks after the FDG PET/CT examination.
Surgical specimens were obtained from patients who underwent mastectomy or lumpectomy for primary breast cancer. Initially, a total of 48 samples comprising 24 high SUV tumors and other 24 low SUV tumors, that were matched with regard to pT and pN factors, were subjected to RNA isolation. A sufficient volume of total RNA were extracted from all 24 samples of high SUV tumors and 14 (58%) of 24 samples of low SUV tumors. Therefore, a total of 38 samples were used for the cDNA microarray study.
These tissue samples of primary breast cancer in the 38 patients were subjected to cDNA microarray and quantitative RT-PCR analyses. The age of patients included in this study ranged from 36 to 81 years (mean, 56 years). The disease was in stage I in 18 patients (T1N0M0 in 18) and stage II in 20 (T1N1M0 in 4, T2N0M0 in 8, and T2N1M0 in 8). All the 38 tumors were histologically invasive ductal carcinoma. All patients underwent FDG PET/CT to evaluate the primary tumor and metastatic site of the disease.
FDG PET/CT and quantification of FDG uptake in primary breast cancer
All patients underwent FDG PET/CT scans (Biograph LSO Emotion, Siemens) at the Tokorozawa PET Diagnostic Imaging Clinic (Tokorozawa, Japan). Patients fasted for at least 6 h before the FDG PET/CT study. One hour after the intravenous administration of 3.7 Mbq/kg FDG, a transmission scan using CT for attenuation correction and anatomical imaging was acquired for 90 s. Intravenous contrast was not administered to patients for the CT portion of the FDG PET/CT.
Back projection images were obtained after applying a Gaussian filter. The spatial resolution of the reconstructed images was 6.0–7.0 mm in the craniocaudal direction, 6.3–7.1 mm in the right-left direction, and 6.3–7.1 mm in the anterior-posterior direction.
SUV is defined as the decay-corrected tissue activity divided by the injected dose per patient body[
9]. A region of interest (ROI) was placed in the primary lesion including the highest uptake area (circular ROI, 1 cm in diameter), and the SUV maximum in the ROI was calculated. SUV was calculated using the following formula: SUV = activity in ROI (MBq/ml)/injected dose (MBq/kg body weight).
We divided these 38 tumors into 2 groups based on the characteristics revealed in the FDG PET/CT. The low SUV group consisted of patients with a primary tumor with an SUV less than 4.0, whereas the high SUV group consisted of patients with a primary tumor with an SUV of 4.0 or greater. There were 14 tumors in the former group and 24 tumors in latter group.
Clinicopathological features of patients classified according to SUV are shown in Table
1. Regarding to age, pT-factor, pN-factor, nuclear grade, ER, and HER2, no statistical difference were detected between 2 groups.
Table 1
Clinicopathological features of 38 patients with primary breast cancer subjected to cDNA microarray and RT-PCR analyses
SUV | Mean± SD | 7.2± 2.5 | 2.3± 0.9 | <0.0001 |
Age | Mean± SD | 56.9± 14.1 | 59.8± 10.3 | 0.5 |
T-factor | T1 | 13 | 9 | 0.5 |
| | T2 | 11 | 5 | |
N-factor | N0 | 16 | 10 | 0.8 |
| | N+ | 8 | 4 | |
Nuclear grade | 1,2 | 10 | 11 | 0.06 |
| | 3 | 14 | 3 | |
ER | - | 7 | 1 | 0.1 |
| | + | 17 | 13 | |
HER2 | 0,1+,2+ (FISH-) | 19 | 13 | 0.3 |
| | 3+ or FISH+ | 5 | 1 | |
RNA extraction and cDNA microarray analysis
The tissue samples obtained from surgical specimens were immediately frozen in liquid nitrogen until RNA isolation. Total RNA was extracted from 14 tumor samples with low SUV and 24 tumors samples with high SUV by using ISOGEN (Nippon Gene, Tokyo, Japan). The amount and quality of RNA were assessed using a UV spectrophotometer. cDNA microarray analysis was performed using IntelliGene
® Human Cancer CHIP Ver. 4.0 (Takara, Kusatsu-shi, Japan). Briefly, 4 μg of total RNA was used for double-stranded cDNA probe synthesis with a T7 oligo (dT) primer. Each cDNA fragment was then subjected to RT amplification that incorporated aminoally-UTP (Ambion), which was coupled with either Cy3 or Cy5 (Amersham Biosciences), and purified through a microcon 30 spin colum (Millipore). The generated RNA was used as a probe for hybridization in IntelliGene
® Human Cancer CHIP Ver. 4.0, as previously described[
14]. The cDNA chip arrayed and immobilized with approximately 890 cDNA fragments of human genes, which are composed of approximately 590 kinds of identified human oncogenes and approximately 300 kinds of the cDNA fragments prescreened by the differential display method between cancer tissue and corresponding normal tissue. For each gene identified by the differential display method, a cDNA region approximately 300 bp in length, which has minimal homology with other genes registered in the cDNA database, was spotted on the DNA microarray chip [
15].
We defined genes with Cy3:Cy5 ratios of 3.0 or greater in signal intensity as up-regulated genes because of the following reasons:
We first identified 20 genes, that showed the Cy3:Cy5 ratios of 1.7 or greater, as the candidate genes that were upregulated in the high SUV tumors (Table
2). In the two genes that showed the Cy3:Cy5 ratios of 3.0 or greater, i.e., CENP-F and CDC6, we could validate their upregulation in the high SUV tumors by RT-PCR as mentioned below.
Table 2
Twenty genes that were identified as upregulated in tumors of the high SUV group compared with those of the low SUV group
1 | CENPF | centromere protein F (mitosin) | NM016343 | 3.66 | cell-cycle regulation |
2 | CDC6 | cell division cycle 6 | NM001254 | 3.36 | cell-cycle regulation |
3 | gtf2b | general transcription factor IIB | M76766 | 2.79 | transcription initiation |
4 | Fgr | Gardner-Rasheed feline sarcoma viral oncogene homolog | NM005248 | 2.49 | mast cell activation |
5 | GAPDHS | glyceraldehyde-3-phosphate_dehydrogenase | NM002046 | 2.18 | carbohydrate metabolism |
6 | Oaz1 | ornithine decarboxylase 1 | NM002539 | 2.14 | regulation of polyamine synthesis |
7 | ACTA1 | actin, alpha 2, smooth muscle, aorta | NM001613 | 2.1 | cell motility, structure |
8 | KRT5 | keratin 5 | NM000424 | 2.05 | type 2 cytokeratine |
9 | RCC1 | chromosome condensation 1 | NM001269 | 2.03 | cell-cycle regulation |
10 | BAK1 | BCL2-antagonist/killer 1 | NM001188 | 1.96 | anti- or pro-apoptotic regulators |
11 | MMP9 | matrix metalloproteinase 9 | NM004994 | 1.95 | embryonic development and tissue remodeling |
12 | MAP2K5 | mitogen-activated protein kinase kinase 5 | NM002757 | 1.94 | Kinase related to signal cascade |
13 | MAP2K2 | mitogen-activated protein kinase kinase 2 | NM030662 | 1.93 | Kinase related to signal cascade |
14 | Litaf | LPS-induced TNF-alpha factor | NM004862 | 1.9 | proinflammatory cytokine |
15 | COL7A1 | collagen, type VII, alpha 1 | NM000094 | 1.85 | epithelial adhesion complex |
16 | HRMT1L2 | HMT1 (hnRNP methyltransferase, S. cerevisiae)-like 2 | NM001536 | 1.84 | catalyzes protein methyl-transferase modification |
17 | CXCL13 | small inducible cytokine B subfamily, member 13 | NM006419 | 1.82 | migration of B lymphocytes |
18 | PLAU | plasminogen activator, urokinase | NM002658 | 1.78 | serine protease |
19 | CDC37 | cell division cycle 37 | NM007065 | 1.77 | cell-cycle regulation |
20 | Pax | paxillin | NM002859 | 1.74 | cell adhesion of the extracellular matrix |
On the other hand, in other candidate genes, e.g., gtf2b (Cy3:Cy5 ratio 2.79), KRT5 (Cy3:Cy5 ratio 2.05), MMP9 (Cy3:Cy5 ratio 1.95), and PLAU (Cy3:Cy5 ratio 1.78), their up-regulation could not be validated by means of RT-PCR. Furthermore, a housekeeping gene GAPDH was also ranked in the candidate genes with a Cy3:Cy5 ratio of 2.18 by cDNA microarray analysis. Therefore, we chose the cut-off value of 3.0.
Validation of microarray data with RT-PCR
Two candidate genes (CENP-F and CDC6) detected on the cDNA microarray screening were selected for the validation of the microarray results. Total RNA was extracted from 100 μg of frozen tumor tissue obtained from each primary breast cancer specimens. Reverse transcription for cDNA was performed from 5 μg of total RNA. PCR was performed using dNTP, Taq polymerase primer pair, and cDNA using a thermal cycler. The primer sequences of CENP-F were 5'-CGAAGAACAACCATGGCAACTCG-3' and 5'-TTCTCGGAGGATGGTGCCTGAAT-3'. The primer sequences of CDC6 were 5'-GCGATGACAACCTATGCAACAC-3' and 5'-TTGGTGGAGAACAAGGAGGTAAA-3'.
The expression value for each gene was normalized against that of β-actin. Results are presented as the mean ± standard error (SE). Statistical analysis was performed using the Student's t test.
Case selection for a validation study
To validate the expression levels of candidate genes at the protein level, we performed an immunohistochemical study. A cohort of 47 patients was selected from those who received surgical therapy to node-negative primary breast cancer from August through December in 2006. The primary cancers exhibited low SUV (mean 2.2 ± 1.0 SD) in 20 patients and high SUV (mean 7.8 ± 3.4 SD) in 27. The patients' ages (mean 53.2 ± 10.0 SD and mean 55.6 ± 10.1 SD, respectively), tumor size (mean 2.4 ± 2.9 SD and mean 3.1 ± 2.1 SD, respectively), ER (positive in 85% and 59%, respectively), and HER2 status (positive in 10% and 26%, respectively) did not differ significantly between the low- and high-SUV groups (Table
3). Molecular subtypes were also evaluated as described below.
Table 3
Comparision of clinicopathological features of patients and immunohistochemical results of biomarkers between the low SUV group and the high SUV group in 47 cases of node-negative breast cancer
SUV | Ave± SD | 7.8± 3.4 | 2.2± 1.0 | <0.0001 |
Age | Ave± SD | 55.6± 10.1 | 53.2± 10.0 | 0.42 |
Tumor size | Ave± SD | 3.1± 2.1 | 2.4± 2.9 | 0.33 |
Nuclear grade | 1 and 2 | 8 | 15 | 0.004 |
| | 3 | 19 | 5 | |
ER | <10% | 11 | 3 | 0.06 |
| | 10% ≦ | 16 | 17 | |
HER2 | 0,1+,2+ (FISH-) | 20 | 18 | 0.17 |
| | 3+ or FISH+ | 7 | 2 | |
CENP-F | Positive | 20 | 9 | 0.04 |
| | Negative | 7 | 11 | |
n-CDC6 | Positive | 13 | 10 | 0.9 |
| | Negative | 10 | 10 | |
c-CDC6 | Positive | 9 | 7 | 0.9 |
| | Negative | 18 | 13 | |
Ki67 | Positive | 25 | 12 | 0.02 |
| | Negative | 2 | 8 | |
p53 | Positive | 9 | 2 | 0.06 |
| | Negative | 18 | 18 | |
Molecular subtypes | Luminal A | 16 | 17 | 0.05 |
| | HER2 | 7 | 2 | |
| | Triple negative | 4 | 1 | |
Tissue microarray (TMA) construction
Hematoxylin and eosin (HE)-stained sections of archival pathological primary breast cancer specimens were reviewed. These specimens were resected from patients between January 1990 and December 1995. The histological diagnosis including histological type and nuclear grade was confirmed for all cases. For the 253 available cases of primary breast cancer, two tissue cores with a diameter of 2.0 mm were punched out from representative areas in 253 archival pathological tissue blocks. TMA was constructed by the method described previously [
16]. One TMA block contained a maximum of 40 tissue cores, and 8 TMA sets were prepared for the present study. We then cut 4-μm-thick sections from the blocks.
Immunohistochemistry
We cut 4-μm thick sections from routinely processed, formalin-fixed paraffin-embedded tissue blocks or TMA blocks and mounted them on silane-coated slides. Immunohistochemistry with anti-human antibodies against centromere protein F (CENP-F) (ab90, 1/200 dilution; Abcam, Cambridge, MA), phosphorylated-CDC6-S54 (CDC6) (AP3058a, 1/200 dilution; Abgent, San Diego, CA), Ki67 (clone: MIB1, ready-to-use, Dako, Glostrup, Denmark), and p53 (clone: DO-7, 1/200 dilution, Dako) was performed by the streptavidin-biotin-peroxidase complex method or the EnVision (Dako) method. To assess CENP-F and CDC6 expressions, normal skin tissues were used as the positive control. ER and HER2 were also immunohistochemically analyzed using specific primary antibodies (Dako) as described previously [
16,
17].
Staining results were independently assessed by 2 of 3 observers (S.U, S.Y, and H.T). When there was a difference in judgment, consensus was reached over a discussion microscope. Immunohistochemical results were assessed based on both the intensity and proportion of cancer cells with nuclear, cytoplasmic, and/or membrane staining. The intensity of nuclear staining were 0 (null), 1+ (faint), and 2+ (strong). Positivity was defined as nuclear staining of 10% or more cancer cells with a strong intensity for CENP-F, Ki67, p53, ER, and PgR. For CDC6, expression patterns in cancer cells were classified into nuclear and cytoplasmic. The detection of nuclear and cytoplasmic stainings in 10% or more cancer cells was defined as positivity of nuclear CDC6 (nCDC6) and cytoplasmic CDC6 (cCDC6), respectively. For HER2, a score of 3+ detected by Herceptest, or gene amplification detected by means of fluorescence
in situ hybridization were defined as positive [
16]. According to the status of ER and HER2, the 47 cases were classified into molecular subtypes, i.e., ER+/HER2- (luminal A subtype), ER+/HER2+ (luminal B subtype), ER-/HER2+ (HER2 subtype), and ER-/HER2- (triple-negative subtype).
Statistical analysis
Statistical analysis was performed using StatView 6.0 software. Positivity of molecular expression was compared between the groups. Cox's proportional hazard regression models were used to assess the prognostic contribution of clinical variables and biomarkers. Hazard ratios were verified by all-possible-subset analyses. A p value of less than 0.05 was considered significant.
Discussion
We compared the gene expression profiles between tumors having a high level of SUV and those having a low level of SUV, and we identified 20 candidate genes in high SUV tumors with an mRNA expression level of greater than 1.7-fold that in low SUV tumors by cDNA microarray analysis. Candidate genes included genes related to cell-cycle function, transcriptional initiation, carbohydrate metabolism, and metastatic potential (Table
2). We confirmed that the 2 candidate genes CENP-F and CDC6 were upregulated in the high SUV tumors by means of quantitative RT-PCR analysis in the study of 47 resected tumors.
SUV levels are reported to be correlated with multiple factors including glucose metabolism, mitotic activity index, and tumor cell density [
13,
18‐
20].
In the previous studies, we demonstrated that tumors with high SUV comprised larger tumor size of invasion and nuclear grade 3 in comparison with those with low SUV, and for primary tumors with invasive size of 2 cm or less, nuclear grade was the independent factor that influenced SUV [
9].
In the present study, we used cDNA microarray analysis to demonstrate the strong relationship between SUV and expression of CENP-F and CDC6 as cell cycle-associated genes.
CENP-F is a nuclear protein associated with the centromere-kinetochore complex, which monitors chromosome-microtubule interactions and serves as the source of checkpoint signals. CENP-F gradually accumulates during the cell cycle until it attains peak levels at the G2/M phase and rapidly degrades upon the completion of mitosis in vitro [
21]. Thus, its expression level is considered to be involved in M phase progression, which gradually increases throughout the S, G2, and M phases of the cell cycle but is absent in G0 and G1 [
21,
22].
CDC6 is a regulator of the early initiation of DNA replication of cancer cells in the S phase. CDC6 licenses DNA replication, and once it is bound to the origin recognition complex at the origins of replication, it commences recruitment, together with Cdt1 and the MCM complex[
23,
24]. Transcription of this protein was reported to be regulated in response to mitogenic signals through a transcriptional control mechanism involving E2F proteins. The phosphorylated CDC6 is considered to be localized in cell nuclei during the G1 phase, but it translocates to the cytoplasm at the start of the S phase [
25,
26].
To confirm the expression of CENP-F and CDC6 immunohistochemically, we conducted a cohort study between the low and high SUV groups of node-negative breast cancer. We also examined the expression of Ki67 and p53 as biomarkers of tumor proliferation and aggressiveness of breast cancer.
Ki67 and p53 are well-known biomarkers of tumor proliferation and aggressiveness[
2]. Ki67 is a nuclear antigen of unknown function and is detectable in cancer cells entering the cell cycle but not in the G0 phase[
27]. p53 is also implicated in the checkpoint of cell-cycle progression in combination with DNA repair and/or induction of apoptosis. Most of the mutant p53 proteins are accumulated in the nuclei and can be immunohistochemically detected[
27].
We could demonstrate significant correlations between high SUV tumors and high CENP-F levels; however, no correlations could be observed between high SUV tumors with both nuclear and cytoplasmic CDC6 expressions.
According to the CENP-F expression level, some investigators have reported that CENP-F is immunohistochemically correlated with highly proliferative cancer cells and poorer prognosis[
21,
22,
28]. Clark et al. reported that high CENP-F expression and tumor size were independent predictors of overall survival in a multivariate analysis containing other prognostic factors such as tumor size, patients age, hormonal receptors and S-phase fraction, in 386 node-negative breast cancer patients [
28].
In a validation study of the DNA microarray dataset using a 70-gene prognosis classifier (Mammaprint
®), O'Brien et al. reported that immunohistochemical expression of CENP-F was an important predictor among the genes highly expressed in breast tumors of patients with poor overall survival[
22]. The results in the present study were mostly compatible with the previous studies discussed above[
22,
28].
In the follow-up data using TMAs of primary breast cancer, CENP-F expression was correlated with a higher recurrence rate and had a tendency of correlation with mortality by cancer. As shown in Table
3, high levels of CENP-F retained prognostic significance together with tumor size and nodal metastasis in a multivariate analysis.
The mRNA level of CDC6 was significantly higher in the high SUV group than the low SUV group of primary breast cancer (
p = 0.025, Figure
1). However, the immunohistochemical expression of CDC6 did not significantly differ between both the groups. Anja et al. reported that the increase in the CDC6 mRNA observed in the absence of p53 was required for the enhanced proliferation of MCF-7 cells[
24]. CDC6 might be a part of a p53 protein network regulating the cell cycle of cancer cells. Further, there have been a few reports that supported the clinical impact of immunohistochemical expression of CDC6[
29,
30]. Nevertheless, the clinical implications of the immunohistochemical expression of CDC6 are still undetermined.
High Ki67 levels (> 10% of the labeling index) were detected more frequently in the high SUV group than in the low SUV group of primary breast cancer (
p = 0.02, Table
4) and correlated with shorter disease-free survival in the univariate and multivariate analyses of DFS (
p = 0.0016 and 0.011, respectively, Table
4).
High p53 levels marginally correlated with primary breast cancers with high SUVs (
p = 0.06, Table
4); however, they were significantly related with poorer prognosis in the univariate analysis of DFS (
p = 0.024, Table
4). We assume that primary breast cancer with high SUV is a characteristic of aggressiveness originated from the p53 alteration, but it seems unlikely that the immunohistochemical measurement of p53 could sufficiently provide clinically useful results because it does not exhibit p53 nonsense point mutations or deletions in p53[
31,
32].
Interestingly, the majority of tumors with HER2 and triple-negative subtypes were included in the high SUV group, while tumors of the luminal-A subtype displayed both the high SUV and low SUV groups (Table
3). We suggested tumors of the HER2 and triple-negative subtypes might feature high proliferation activity, while the luminal-A subtype could be comprised of tumors with various proliferation activity. We need further long-term follow-up survey of patients and compare the prognostic impact of SUV between the high and low SUV groups of the luminal-A tumors.
Competing interests
The authors declare that they have no competing interests.
Authors' contributions
SU performed the planning, acquisition of data, analysis of data, and writing of the manuscript. HT and SY (pathologists) performed the planning, interpretation of data, and the manuscript in co-operation with SU. JY, KF, and SU (breast surgeons) performed surgery and the statistic analysis. KT, JI, and YA (radiologists) performed the evaluation of tumoral SUV levels and data acquisition. NK (biochemist) performed the statistic analysis. TK (oncologist) constructed the TMA and performed data analysis. HM participated in its design and coordination in co-operation with SU and HT. All authors read and approved the final manuscript.