nach oben

Archives of Virology

Erschienen in:

30.04.2020 | Brief Report

Full-genome sequences of GII.13[P21] recombinant norovirus strains from an outbreak in Changsha, China

verfasst von: Zheng Huang, Dong Yao, Shan Xiao, Dong Yang, Xinhua Ou

Erschienen in: Archives of Virology | Ausgabe 7/2020

Einloggen, um Zugang zu erhalten

Abstract

On 31 March 2019, 68 school students suffered from vomiting, diarrhea, and abdominal pain after participating in a group activity at a commercial park. In this outbreak, multiple norovirus genotypes were observed, including GII.2[P16], GII.17[P17], and GII.13[P21]. Further, we determined the full-genome sequences of two strains of GII.13[P21] recombinant noroviruses, which were 7434 nt long. Phylogenetic analysis based on open reading frames (ORFs) 1 and 2 revealed that these recombinants were related to stains of different genotypes from different countries. The full genome nucleotide sequences of the two isolates were 97.0% and 98.0% identical to those of strains from London and Thailand, respectively. Simplot analysis revealed the presence of a break point at nt 5059 in the ORF1 region. The histo-blood group antigen binding sites were conserved in both recombinant viruses. Our findings not only provide valuable genetic information about a recombinant norovirus but also contribute to our general understanding of the evolution, genetic diversity, and distribution of noroviruses.

White PA (2014) Evolution of norovirus. Clin Microbiol Infect 20(8):741–745. https://doi.org/10.1111/1469-0691.12746 CrossRefPubMed

Vega E, Barclay L, Gregoricus N, Shirley SH, Lee D, Vinje J (2014) Genotypic and epidemiologic trends of norovirus outbreaks in the United States, 2009 to 2013. J Clin Microbiol 52(1):147–155. https://doi.org/10.1128/JCM.02680-13 CrossRefPubMedPubMedCentral

Mabasa VV, Meno KD, Taylor MB, Mans J (2018) Environmental Surveillance for Noroviruses in Selected South African Wastewaters 2015–2016: Emergence of the Novel GII.17. Food Environ Virol 10 (1):16–28. https://doi.org/10.1007/s12560-017-9316-2

Meghnath K, Hasselback P, McCormick R, Prystajecky N, Taylor M, McIntyre L, Man S, Whitfield Y, Warshawsky B, McKinley M, Bitzikos O, Hexemer A, Galanis E (2019) Outbreaks of norovirus and acute gastroenteritis associated with British Columbia Oysters, 2016–2017. Food Environ Virol 11(2):138–148. https://doi.org/10.1007/s12560-019-09374-4 CrossRefPubMed

Deval J, Jin Z, Chuang YC, Kao CC (2017) Structure(s), function(s), and inhibition of the RNA-dependent RNA polymerase of noroviruses. Virus Res 234:21–33. https://doi.org/10.1016/j.virusres.2016.12.018 CrossRefPubMed

Vinje J (2015) Advances in laboratory methods for detection and typing of norovirus. J Clin Microbiol 53(2):373–381. https://doi.org/10.1128/JCM.01535-14 CrossRefPubMedPubMedCentral

Chhabra P, de Graaf M, Parra GI, Chan MC, Green K, Martella V, Wang Q, White PA, Katayama K, Vennema H, Koopmans MPG, Vinje J (2019) Updated classification of norovirus genogroups and genotypes. J Gen Virol 100(10):1393–1406. https://doi.org/10.1099/jgv.0.001318 CrossRefPubMedPubMedCentral

Kroneman A, Vega E, Vennema H, Vinje J, White PA, Hansman G, Green K, Martella V, Katayama K, Koopmans M (2013) Proposal for a unified norovirus nomenclature and genotyping. Arch Virol 158(10):2059–2068. https://doi.org/10.1007/s00705-013-1708-5 CrossRefPubMedPubMedCentral

Bull RA, White PA (2011) Mechanisms of GII.4 norovirus evolution. Trends Microbiol 19 (5):233–240. https://doi.org/10.1016/j.tim.2011.01.002

10.

Gao Z, Liu B, Yan H, Li W, Jia L, Tian Y, Chen Y, Wang Q, Pang X (2019) Norovirus outbreaks in Beijing, China, from 2014 to 2017. J Infect 79(2):159–166. https://doi.org/10.1016/j.jinf.2019.05.019 CrossRefPubMed

11.

Han J, Ji L, Shen Y, Wu X, Xu D, Chen L (2015) Emergence and predominance of norovirus GII.17 in Huzhou, China, 2014–2015. Virol J 12:139. https://doi.org/10.1186/s12985-015-0370-9

12.

Fu J, Ai J, Jin M, Jiang C, Zhang J, Shi C, Lin Q, Yuan Z, Qi X, Bao C, Tang F, Zhu Y (2015) Emergence of a new GII.17 norovirus variant in patients with acute gastroenteritis in Jiangsu, China, September 2014 to March 2015. Euro Surveill 20(24):21157. https://doi.org/10.2807/1560-7917.es2015.20.24.21157 CrossRefPubMed

13.

Lu J, Sun L, Fang L, Yang F, Mo Y, Lao J, Zheng H, Tan X, Lin H, Rutherford S, Guo L, Ke C, Hui L (2015) Gastroenteritis Outbreaks Caused by Norovirus GII.17, Guangdong Province, China, 2014–2015. Emerg Infect Dis 21 (7):1240–1242. https://doi.org/10.3201/eid2107.150226

14.

Zhou X, Kong DG, Li J, Pang BB, Zhao Y, Zhou JB, Zhang T, Xu JQ, Kobayashi N, Wang YH (2019) An outbreak of gastroenteritis associated with GII.17 Norovirus-contaminated secondary water supply system in Wuhan, China, 2017. Food Environ Virol 11 (2):126–137. https://doi.org/10.1007/s12560-019-09371-7

15.

Cong X, Sun XM, Qi JX, Li HB, Chai WG, Zhang Q, Wang H, Kong XY, Song J, Pang LL, Jin M, Li DD, Tan M, Duan ZJ (2019) GII.13/21 Noroviruses Recognize Glycans with a Terminal beta-Galactose via an Unconventional Glycan Binding Site. J Virol 93 (15):e00723–19. https://doi.org/10.1128/jvi.00723-19

16.

Liu W, Chen Y, Jiang X, Xia M, Yang Y, Tan M, Li X, Rao Z (2015) A Unique Human Norovirus Lineage with a Distinct HBGA Binding Interface. PLoS Pathog 11(7):e1005025. https://doi.org/10.1371/journal.ppat.1005025 CrossRefPubMedPubMedCentral

17.

de Graaf M, van Beek J, Koopmans MP (2016) Human norovirus transmission and evolution in a changing world. Nat Rev Microbiol 14(7):421–433. https://doi.org/10.1038/nrmicro.2016.48 CrossRefPubMed

18.

Lian Y, Wu S, Luo L, Lv B, Liao Q, Li Z, Rainey JJ, Hall AJ, Ran L (2019) Epidemiology of Norovirus outbreaks reported to the public health emergency event surveillance system, China, 2014–2017. Viruses 11(4):342. https://doi.org/10.3390/v11040342 CrossRefPubMedCentral

19.

Bruggink L, Catton M, Marshall J (2016) A norovirus intervariant GII.4 recombinant in Victoria, Australia, June 2016: the next epidemic variant? Euro Surveill 21(39):30353. https://doi.org/10.2807/1560-7917.ES.2016.21.39.30353 CrossRefPubMedCentral

20.

Han J, Wu X, Chen L, Fu Y, Xu D, Zhang P, Ji L (2018) Emergence of norovirus GII.P16-GII.2 strains in patients with acute gastroenteritis in Huzhou, China, 2016–2017. BMC Infect Dis 18 (1):342. https://doi.org/10.1186/s12879-018-3259-6

21.

Thanh HD, Than VT, Nguyen TH, Lim I, Kim W (2016) Emergence of Norovirus GII.17 variants among children with acute gastroenteritis in South Korea. PLoS One 11 (5):e0154284. https://doi.org/10.1371/journal.pone.0154284

22.

Hernandez JDM, Silva LDD, Sousa ECJ, Lucena MSS, Soares LDS, Mascarenhas JDP, Gabbay YB (2016) Analysis of uncommon norovirus recombinants from Manaus, Amazon region, Brazil: GII.P22/GII.5, GII.P7/GII.6 and GII.Pg/GII.1. Infect Genet Evol 39:365–371. https://doi.org/10.1016/j.meegid.2016.02.007 CrossRefPubMed

23.

Medici MC, Tummolo F, Martella V, Giammanco GM, De Grazia S, Arcangeletti MC, De Conto F, Chezzi C, Calderaro A (2014) Novel recombinant GII.P16_GII.13 and GII.P16_GII.3 norovirus strains in Italy. Virus Res 188:142–145. https://doi.org/10.1016/j.virusres.2014.04.005 CrossRefPubMed

24.

Won YJ, Park JW, Han SH, Cho HG, Kang LH, Lee SG, Ryu SR, Paik SY (2013) Full-genomic analysis of a human norovirus recombinant GII.12/13 novel strain isolated from South Korea. PLoS One 8 (12):e85063. https://doi.org/10.1371/journal.pone.0085063

25.

Lee JW, Lee SG, Cho HG, Park YJ, Yun JW, Park CJ, Paik SY (2017) Full-genome sequence analysis of an uncommon norovirus genotype, GII.21, from South Korea. Epidemiol Infect 145 (11):2231–2240. https://doi.org/10.1017/s0950268817001273

26.

Miura T, Gima A, Akiba M (2019) Detection of norovirus and rotavirus present in suspended and dissolved forms in drinking water sources. Food Environ Virol 11(1):9–19. https://doi.org/10.1007/s12560-018-9361-5 CrossRefPubMed

27.

Kim HS, Hyun J, Kim JS, Song W, Lee KM (2013) Emergence of GII.4 Sydney norovirus in South Korea during the winter of 2012–2013. J Microbiol Biotechnol 23 (11):1641–1643. https://doi.org/10.4014/jmb.1308.08053

28.

Supadej K, Khamrin P, Kumthip K, Malasao R, Chaimongkol N, Saito M, Oshitani H, Ushijima H, Maneekarn N (2019) Distribution of norovirus and sapovirus genotypes with emergence of NoV GII.P16/GII.2 recombinant strains in Chiang Mai, Thailand. J Med Virol 91 (2):215–224. https://doi.org/10.1002/jmv.25261

29.

Yahiro T, Wangchuk S, Wada T, Dorji C, Matsumoto T, Mynak ML, Tshering KP, Nishizono A, Ahmed K (2015) Norovirus GII.21 in children with Diarrhea, Bhutan. Emerg Infect Dis 21 (4):732-734. https://doi.org/10.3201/eid2104.141856

30.

Koo ES, Kim MS, Choi YS, Park KS, Jeong YS (2017) Occurrence of novel GII.17 and GII.21 norovirus variants in the coastal environment of South Korea in 2015. PLoS One 12 (2):e0172237. https://doi.org/10.1371/journal.pone.0172237

31.

Tan M, Jiang X (2007) Norovirus-host interaction: implications for disease control and prevention. Expert Rev Mol Med 9(19):1–22. https://doi.org/10.1017/S1462399407000348 CrossRefPubMed

Titel: Full-genome sequences of GII.13[P21] recombinant norovirus strains from an outbreak in Changsha, China
verfasst von: Zheng Huang
Dong Yao
Shan Xiao
Dong Yang
Xinhua Ou
Publikationsdatum: 30.04.2020
Verlag: Springer Vienna
Erschienen in: Archives of Virology / Ausgabe 7/2020
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-020-04643-1

Leitlinien kompakt für die Innere Medizin

Mit medbee Pocketcards sicher entscheiden.

^{Seit 2022 gehört die medbee GmbH zum Springer Medizin Verlag}

Kostenlos registrieren

Neu im Fachgebiet Innere Medizin

19.04.2024 | Vorhofflimmern | Nachrichten

Update Innere Medizin

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.

Newsletter bestellen

Live-Webinar: Aktuelle Leitlinien bei Herz-Kreislauf-Erkrankungen

Springer Medizin

Full-genome sequences of GII.13[P21] recombinant norovirus strains from an outbreak in Changsha, China

Abstract

Leitlinien kompakt für die Innere Medizin

Neu im Fachgebiet Innere Medizin

Parodontalbehandlung verbessert Prognose bei Katheterablation

Prostatakarzinom: EU initiiert neues Screeningkonzept

Blasenkarzinom – Biomarker statt Zytologie?

Antihypertensiva schützen auch alte Menschen noch vor Demenz

Update Innere Medizin

Live-Webinar: Aktuelle Leitlinien bei Herz-Kreislauf-Erkrankungen

Springer Medizin

Abstract

Bitte loggen Sie sich ein, um Zugang zu diesem Inhalt zu erhalten

Weitere Artikel der Ausgabe 7/2020

Epidemiological and genetic characteristics of porcine reproduction and respiratory syndrome virus 2 in mainland China, 2017–2018

High success rates for the use of sofosbuvir/ombitasvir/paritaprevir/ritonavir + ribavirin and sofosbuvir/simeprevir/daclatasvir + ribavirin in retreatment of chronic hepatitis C infection after unsuccessful sofosbuvir/daclatasvir therapy: a real-life experience

The emergence of SARS, MERS and novel SARS-2 coronaviruses in the 21st century

A new begomovirus isolated from a potyvirus-infected bean plant causes asymptomatic infections in bean and N. benthamiana

Complete genome sequence of a novel grapevine-infecting member of the genus Polerovirus, grapevine polerovirus 1

Correction to: Intra-host diversity of hepatitis B virus during mother-to-child transmission: the X gene may play a key role in virus survival in children after transmission

Leitlinien kompakt für die Innere Medizin

Neu im Fachgebiet Innere Medizin

Parodontalbehandlung verbessert Prognose bei Katheterablation

Prostatakarzinom: EU initiiert neues Screeningkonzept

Blasenkarzinom – Biomarker statt Zytologie?

Antihypertensiva schützen auch alte Menschen noch vor Demenz

Update Innere Medizin