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Erschienen in: Diabetology & Metabolic Syndrome 1/2019

Open Access 01.12.2019 | Research

Genetic associations between Transcription Factor 7 Like 2 rs7903146 polymorphism and type 2 diabetes mellitus: a meta-analysis of 115,809 subjects

verfasst von: Liying Lou, Jingjing Wang, Jing Wang

Erschienen in: Diabetology & Metabolic Syndrome | Ausgabe 1/2019

Abstract

Background

Some genetic association studies tried to investigate potential associations of Transcription Factor 7 Like 2 (TCF7L2) rs7903146 polymorphism with type 2 diabetes mellitus (T2DM). However, the results of these studies were not consistent. Thus, we performed the present meta-analysis to explore associations between TCF7L2 rs7903146 polymorphism and T2DM in a larger pooled population.

Methods

Systematic literature research of PubMed, Web of Science and Embase was performed to identify eligible studies for pooled analyses. I2 statistics were employed to assess between-study heterogeneities. If I2 was greater than 50%, random-effect models (REMs) would be used to pool the data. Otherwise, fixed-effect models (FEMs) would be applied for synthetic analyses.

Results

Totally 68 studies with 115,809 subjects were included for analyses. The pooled analyses showed that TCF7L2 rs7903146 (dominant model: p < 0.0001; recessive model: p < 0.0001; over-dominant model: p < 0.0001; allele model: p < 0.0001) polymorphism was significantly associated with susceptibility to T2DM in overall population. Further subgroup analyses revealed similar significant findings in both Asians and Caucasians.

Conclusions

In conclusion, our findings supported that TCF7L2 rs7903146 polymorphism could be used to identify individuals at high risk of developing T2DM in Asians and Caucasians.
Hinweise

Electronic supplementary material

The online version of this article (https://​doi.​org/​10.​1186/​s13098-019-0451-9) contains supplementary material, which is available to authorized users.

Publisher's Note

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Abkürzungen
TCF7L2
Transcription Factor 7 Like 2
T2DM
type 2 diabetes mellitus
HWE
Hardy–Weinberg equilibrium
NOS
Newcastle–Ottawa scale
REM
random-effect model
FEM
fixed-effect model

Background

Type 2 diabetes mellitus (T2DM), characterized by chronic hyperglycemia caused by insufficient responses to insulin, is the most prevalent type of metabolic disorder, and it is estimated that over 344 million people are currently affected by this disease worldwide [1, 2]. So far, the exact pathogenesis of T2DM is still not fully understood. However, past genome-wide association studies already identified over 100 genetic loci that were significantly associated with an increased susceptibility to T2DM, which supported that inherit factors were crucial for its occurrence and development [3, 4].
Transcription Factor 7 Like 2 (TCF7L2) gene encodes T cell transcription factor 4, a transcription factor of the Wnt/β-catenin signaling pathway that is vital for embryogenesis of the pancreas islet and regulation of blood glucose [5, 6]. Recently, some genome-wide association studies found that TCF7L2 rs7903146 polymorphism could significantly affect individual susceptibility to T2DM in certain populations [7, 8]. Since then, many genetic association studies were performed in diverse populations to estimate potential associations between TCF7L2 rs7903146 polymorphism and T2DM, with inconsistent results. In 2018, Ding et al. [9] already performed a meta-analysis to assess association between TCF7L2 rs7903146 polymorphism and T2DM, but only 28 studies were included by the authors and many eligible studies were missed. Therefore, we conducted an updated meta-analysis of all relevant studies published before May 2019 to more comprehensively analyze the effects of TCF7L2 rs7903146 polymorphism on individual susceptibility to T2DM in a larger pooled population.

Methods

The current meta-analysis was reported according to the Preferred Reporting Items for Systematic Reviews and Meta-analyses (PRISMA) statement [10].

Literature search and inclusion criteria

Potentially relevant articles were searched in PubMed, Medline and Web of Science using the following key words: “TCF7L2”, “Transcription Factor 7 Like 2”, “polymorphism”, “variant”, “mutation”, “SNP”, “genotype”, “allele”, “type 2 diabetes”, “type II diabetes” and “T2DM”. The initial literature search was performed in January 2019 and the latest update was finished in May 2019. Moreover, we also screened the references of all retrieved articles to identify other potential relevant studies.
Included studies must meet all the following criteria: (1) genetic association studies on associations between TCF7L2 rs7903146 polymorphism and T2DM in human beings; (2) provide genotypic/allelic frequency of TCF7L2 rs7903146 polymorphism in cases and controls; (3) full text in English available. For duplicate reports, only the most complete one was included. Studies were excluded if one of the following criteria was fulfilled: (1) not about TCF7L2 rs7903146 polymorphism and T2DM; (2) studies that were not performed in human beings; (3) case reports or case series; (4) reviews, comments and conference presentations.

Data extraction and quality assessment

The following data were extracted from included studies: (1) Last name of first author; (2) Year of publication; (3) Country where the study was conducted and ethnicity of study participants; (4) type of disease; (5) the number of cases and controls; and (6) genotypic/allelic distributions of TCF7L2 rs7903146 polymorphism in cases and controls. The probability value (p value) of Hardy–Weinberg equilibrium (HWE) was also calculated. When necessary, we wrote to the corresponding authors for extra information. We used the Newcastle–Ottawa scale (NOS) to assess the quality of eligible studies [11]. This scale has a score range of zero to nine, and studies with a score of more than seven were thought to be of high quality. Data extraction and quality assessment were performed by two independent reviewers. Any disagreement between two reviewers was solved by discussion until a consensus was reached.

Statistical analyses

We used Review Manager Version 5.3.3 (The Cochrane Collaboration, Software Update) to conduct statistical analyses. We calculated odds ratios (ORs) and 95% confidence intervals (CIs) to estimate strength of associations between TCF7L2 rs7903146 polymorphism and T2DM in dominant, recessive, over-dominant and allele models. Statistical significances of pooled analyses were determined by the Z test, with a p value of 0.05 or less was defined as statistically significant. I2 statistics were employed to assess between-study heterogeneities. If I2 was greater than 50%, random-effect models (REMs) would be used to pool the data on account of significant heterogeneities. Otherwise, fixed-effect models (FEMs) would be used for synthetic analyses. Subgroup analyses by ethnicity of participants were subsequently performed to evaluate effects of ethnic background on investigated genetic associations. Sensitivity analyses were carried out to test the stability of pooled results by omitting one study each time and re-perform analyses based on the results of the remaining studies. Publication biases were evaluated with funnel plots.

Results

Characteristics of included studies

The initial literature search found 946 potential relevant articles. After exclusion of irrelevant and duplicate articles by reading titles and abstracts, 278 potentially relevant articles were retrieved for eligibility assessment. Another 210 articles were subsequently excluded after reading the full text. Finally, a total of 68 studies that met the inclusion criteria of our meta-analysis were included (Fig. 1). Baseline characteristics of included studies were shown in Table 1.
Table 1
The characteristics of included studies
First author, year
Country
Ethnicity
Type of disease
Sample size
Genotypes (wtwt/wtmt/mtmt)
p value for HWE
NOS score
Cases
Controls
rs7903146 C/T
 Acharya 2015
Saudi Arabia
South Asian
T2DM
359/351
131/137/91
132/143/76
0.002
8
 Al-Sinani 2015
Oman
South Asian
T2DM
992/294
NA
NA
NA
7
 Anjum 2018
China
East Asian
T2DM
339/191
160/117/62
110/56/25
< 0.001
7
 Assmann 2014
Brazil
Mixed
T2DM
953/535
382/415/156
261/215/59
0.147
8
 Barra 2012
Brazil
Mixed
T2DM
113/139
49/47/17
70/63/6
0.076
7
 Barros 2014
Brazil
Mixed
T2DM
108/109
53/49/6
58/40/11
0.304
7
 Beloso 2018
Uruguay
Mixed
T2DM
177/133
84/66/27
71/47/15
0.104
7
 Bielicki 2019
Poland
Caucasian
T2DM
121/479
69/45/7
285/172/22
0.539
7
 Bodhini 2007
India
South Asian
T2DM
1031/1038
462/455/114
555/391/92
0.055
8
 Cai 2019
China
East Asian
T2DM
296/446
197/83/16
287/147/12
0.180
8
 Cauchi 2006
France
Caucasian
T2DM
2367/2499
787/1149/431
1208/1060/231
0.944
8
 Chandak 2007
India
South Asian
T2DM
955/399
391/423/141
205/160/34
0.726
8
 Chang 2007
Taiwan
East Asian
T2DM
760/760
NA
NA
NA
7
 Chidambaram 2016
India
South Asian
T2DM
877/838
NA
NA
NA
7
 Corella 2016
Spain
Caucasian
T2DM
3411/3607
1158/1680/573
1612/1569/426
0.140
8
 Dahlgren 2017
Sweden
Caucasian
T2DM
168/885
67/83/18
496/327/62
0.421
8
 Danquah 2013
Germany
Caucasian
T2DM
674/375
273/323/78
182/165/28
0.257
7
 De Silva 2007
UK
Caucasian
T2DM
601/2099
211/299/91
1032/887/180
0.586
7
 El-Lebedy 2016
Egypt
Caucasian
T2DM
180/210
48/126/6
112/95/3
< 0.001
8
 Erkoç Kaya 2017
Turkey
Caucasian
T2DM
171/120
58/95/18
57/47/16
0.215
7
 Ezzidi 2009
Tunisia
Caucasian
T2DM
863/511
250/396/217
181/235/95
0.227
8
 Groves 2006
UK
Caucasian
T2DM
2001/2476
771/960/270
1175/1084/217
0.139
8
 Guewo-Fokeng 2015
Cameroon
African
T2DM
74/74
37/30/7
37/37/0
0.004
7
 Gupta 2010
India
South Asian
T2DM
195/161
55/96/44
62/78/21
0.647
8
 Hayashi 2007
Japan
East Asian
T2DM
1619/1069
1450/165/4
980/85/2
0.146
8
 Horikoshi 2007
Japan
East Asian
T2DM
1174/823
1051/119/4
770/51/2
0.243
8
 Hsiao 2017
Taiwan
East Asian
T2DM
562/986
497/62/3
933/52/1
0.755
7
 Humphries 2016
UK
Caucasian
T2DM
1459/2493
601/665/193
1295/1001/197
0.854
7
 Humphries 2016
UK
South Asian
T2DM
837/300
366/375/96
163/111/26
0.260
7
 Humphries 2016
UK
African
T2DM
307/311
141/136/30
161/124/26
0.759
7
 Hussain 2014
India
South Asian
T2DM
123/82
45/63/15
43/35/4
0.350
7
 Isakova 2019
Kyrgyzstan
Caucasian
T2DM
114/109
91/20/3
89/16/4
0.009
8
 Jia 2016
China
East Asian
T2DM
248/267
125/73/50
165/74/28
< 0.001
8
 Kalantari 2019
Iran
South Asian
T2DM
530/420
155/241/134
187/173/60
0.056
7
 Katsoulis 2018
Greece
Caucasian
T2DM
148/80
30/104/14
54/23/3
0.779
7
 Khan 2015
India
South Asian
T2DM
42/98
13/18/11
57/33/8
0.312
7
 Khan 2015
India
South Asian
T2DM
250/250
92/120/38
144/87/19
0.255
7
 Kimber 2007
UK
Caucasian
T2DM
3225/3291
1405/1459/361
1714/1329/248
0.663
8
 Kong 2015
China
East Asian
T2DM
5169/4560
NA
NA
NA
7
 Kunika 2008
Japan
East Asian
T2DM
1422/1423
1246/171/5
1309/111/3
0.689
8
 Löfvenborg 2019
Sweden
Caucasian
T2DM
1242/1530
NA
NA
NA
7
 Marquezine 2008
Brazil
Mixed
T2DM
285/1681
83/160/42
684/833/164
< 0.001
8
 Mayans 2007
Sweden
Caucasian
T2DM
824/820
452/318/54
532/253/35
0.481
8
 Miranda-Lora 2017
Mexico
Mixed
T2DM
156/212
115/38/3
157/51/4
0.952
8
 Miyake 2008
Japan
East Asian
T2DM
2154/1834
1921/228/5
1696/137/1
0.295
8
 Moran 2015
Venezuela
African
T2DM
70/73
26/35/9
46/22/5
0.307
8
 Musavi 2015
Iran
South Asian
T2DM
70/100
19/36/15
45/48/7
0.222
7
 Ouhaibi-Djellouli 2014
Algeria
African
T2DM
76/644
16/41/19
228/287/129
0.027
8
 Palizban 2017
Iran
South Asian
T2DM
204/80
60/95/49
32/41/7
0.224
8
 Palmer 2011
USA
Mixed
T2DM
982/1039
NA
NA
NA
7
 Papandreou 2019
Spain
Caucasian
T2DM
869/244
382/383/104
106/103/35
0.225
8
 Plengvidhya 2018
Thailand
East Asian
T2DM
500/500
429/67/4
456/44/0
0.303
8
 Pourahmadi 2015
Iran
South Asian
T2DM
200/200
109/68/23
126/59/15
0.037
8
 Rees 2008
UK
South Asian
T2DM
828/432
352/360/116
222/166/44
0.122
8
 Reyes-López 2019
Mexico
Mixed
T2DM
23/83
14/6/3
59/24/0
0.124
7
 Saadi 2008
United Arab Emirates
South Asian
T2DM
180/188
56/103/21
71/94/23
0.339
7
 Scott 2006
USA
Mixed
T2DM
1151/953
NA
NA
NA
7
 Tabara 2009
Japan
East Asian
T2DM
481/398
434/45/2
372/26/0
0.501
8
 Turki 2013
Tunisia
South Asian
T2DM
895/878
255/432/208
330/414/134
0.824
7
 Uma Jyothi 2015
India
South Asian
T2DM
758/621
341/326/83
391/193/37
0.048
7
 van Vliet-Ostaptchouk 2007
Netherlands
Caucasian
T2DM
496/907
203/221/72
459/365/83
0.397
7
 Včelák 2012
Czech Republic
Caucasian
T2DM
347/376
148/156/43
205/147/24
0.731
8
 Wang 2013
China
East Asian
T2DM
1842/7777
1553/283/6
6718/1032/27
0.057
8
 Wrzosek 2019
Poland
Caucasian
T2DM
129/345
67/50/12
219/113/13
0.738
8
 Yako 2015
South Africa
African
T2DM
152/328
66/74/12
184/129/15
0.199
8
 Yu 2009
USA
Mixed
T2DM
686/305
355/271/60
170/111/24
0.330
8
 Zhang 2016
China
East Asian
T2DM
227/5284
200/24/3
4567/701/16
0.045
8
 Zheng 2012
China
East Asian
T2DM
227/152
202/24/1
139/13/0
0.582
8
 Zhu 2017
China
East Asian
T2DM
497/782
478/19/0
740/41/1
0.584
8
 Zhuang 2018
China
East Asian
T2DM
90/96
54/26/10
69/24/3
0.611
7
T2DM type 2 diabetes mellitus, wt Wild type, mt mutant type, HWE Hardy–Weinberg equilibrium, NOS Newcastle–ottawa scale, NA not available

TCF7L2 rs7903146 polymorphism and T2DM

The results of overall and subgroup analyses were summarized in Table 2. Totally 68 studies with 115,809 subjects were included for analyses, the pooled analyses showed that TCF7L2 rs7903146 (dominant model: p < 0.0001, OR = 0.66, 95% CI 0.63–0.70; recessive model: p < 0.0001, OR = 1.64, 95% CI 1.56–1.73; over-dominant model: p < 0.0001, OR = 1.27, 95% CI 1.21–1.34; allele model: p < 0.0001, OR = 0.71, 95% CI 0.68–0.74) polymorphism was significantly associated with susceptibility to T2DM in overall population. Further subgroup analyses revealed similar significant findings in both Asians and Caucasians (Table 2).
Table 2
Results of overall and subgroup analyses
Variables
Sample size
Dominant comparison
Recessive comparison
Over-dominant comparison
Allele comparison
p value OR (95% CI)
p value OR (95% CI)
p value OR (95% CI)
p value OR (95% CI)
Overall
51,656/64,153
<0.0001 0.66 (0.63–0.70)
<0.0001 1.64 (1.56–1.73)
<0.0001 1.27 (1.21–1.34)
<0.0001 0.71 (0.68–0.74)
Caucasian
19,410/23,456
<0.0001 0.64 (0.58–0.70)
<0.0001 1.64 (1.54–1.75)
<0.0001 1.31 (1.21–1.43)
<0.0001 0.70 (0.65–0.75)
East Asian
17,607/27,348
<0.0001 0.73 (0.63–0.83)
<0.0001 1.90 (1.46–2.46)
0.0006 1.28 (1.11–1.48)
<0.0001 0.74 (0.66–0.83)
South Asian
9326/6730
<0.0001 0.63 (0.59–0.68)
<0.0001 1.65 (1.48–1.84)
<0.0001 1.24 (1.16–1.33)
<0.0001 0.65 (0.60–0.71)
OR odds ratio, CI confidence interval, NA not available, T2DM type 2 diabetes mellitus

Sensitivity analyses

We performed sensitivity analyses by deleting one individual study each time to test the effects of individual study on pooled results. No any altered results were observed in overall and subgroup comparisons, which indicated that our findings were statistically robust.

Publication biases

We used funnel plots to assess publication biases. We did not find obvious asymmetry of funnel plots in any comparisons, which suggested that our findings were unlikely to be impacted by severe publication biases (Additional file 1: Fig. S1).

Discussion

Despite prominent advancements achieved in drug therapy over the last few decades, T2DM and its associated vascular complications are still leading causes of death and disability around the world [12, 13]. The exact cause of T2DM is still largely unclear in spite of extensive explorations. However, the obvious familial aggregation tendency of T2DM indicated that genetic factors played significant parts in its pathogenesis [14]. Thus, identify genetic biomarkers is of particularly importance for an early diagnosis and a better prognosis of T2DM patients.
TCF7L2, a box-containing transcription factor that is vital for blood glucose homeostasis, is considered to act through regulation of proglucagon gene expression in enteroendocrine cells via the Wnt signaling pathway [15], and pre-clinical studies also found that TCF7L2 expression is positively associated with insulin gene expression in human islets [16]. Considering the vital role of TCF7L2 in regulating blood glucose, many genetic association studies were performed in diverse populations to investigate whether functional TCF7L2 polymorphisms could impact individual susceptibility to T2DM. To our knowledge, this is to date the most comprehensive meta-analysis on association between TCF7L2 rs7903146 polymorphism and T2DM, and our pooled analyses suggested that TCF7L2 rs7903146 polymorphism was significantly associated with T2DM in both Asians and Caucasians. The stabilities of synthetic results were evaluated by sensitivity analyses, and no alterations of results were observed in any comparisons, which suggested that our findings were statistically robust. Significant heterogeneities were detected for dominant and allele comparisons, thus pooled analyses for these two genetic models were performed with REMs. But in further subgroup analyses, an obvious reduction tendency of heterogeneity was found in both Asians and Caucasians, which suggested that differences in ethnic background could largely explain observed heterogeneities between studies. Nevertheless, it is worth noting that the obvious heterogeneities existed among included studies indicated that the distribution of TCF7L2 rs7903146 polymorphism varies greatly from population to population. Therefore, the genetic association between TCF7L2 rs7903146 polymorphism and T2DM may be ethnic-specific, and we should not generalize the subgroup analyses results to a broader population.
There are several points that need to be pointed out about the current study. First, the exact underlying molecular mechanisms of our positive findings remains to be explored, but we speculated that TCF7L2 rs7903146 polymorphism may lead to alternations in gene expression or changes in protein structure, which may subsequently affect biological functions of TCF7L2, impact insulin secretion or decrease sensitivity to insulin, and ultimately affect individual susceptibility to T2DM. Second, the pathogenic mechanism of T2DM is extremely complex, and hence despite our positive findings, it is unlikely that a single gene polymorphism could significantly contribute to its development, and thus we strongly recommend further studies to perform haplotype analyses and explore potential gene–gene interactions [17, 18]. Third, to more precisely measure the effects of certain genetic factors on disease occurrence and development, gene-environmental interactions should also be considered. However, since included studies only focused on the effects of TCF7L2 rs7903146 polymorphism on individual susceptibility to T2DM, such analyses were not applicable in the current meta-analysis. But to better elucidate the underlying pathogenesis mechanisms of T2DM, future studies should try to investigate the interaction of TCF7L2 gene polymorphisms with potential pathogenic environmental factors such as unhealthy diets or lack of exercise [19]. Our meta-analysis certainly has some limitations. Firstly, although methodology qualities of included studies were generally good, it should be noted that we did not have access to genotypic distributions of investigated polymorphisms according to base characteristics of study subjects. Therefore, our results were derived from unadjusted estimations, and failure to conduct further adjusted analyses for baseline characteristics of participants such as age, gender and co-morbidity conditions may influence the veracity of our findings [20, 21]. Secondly, significant heterogeneities were detected in certain subgroup comparisons, which indicated that the inconsistent results of included studies could not be fully explained by differences in ethnic background, and other unmeasured characteristics of participants may also partially attribute to between-study heterogeneities [22]. Thirdly, since only published articles were eligible for analyses, although funnel plots revealed no obvious publication biases, we still could not rule out the possibility of potential publication biases [23]. Taken these limitations into consideration, the results of the current study should be interpreted with caution.

Conclusions

In conclusion, our findings indicated that TCF7L2 rs7903146 polymorphism was significantly associated with altered susceptibility to T2DM in both Asians and Caucasians. These results supported that this polymorphism may be used to identify individuals at high risk of developing T2DM in Asians and Caucasians. Further well-designed studies need to explore possible associations between other TCF7L2 gene polymorphisms and T2DM.

Acknowledgements

None.
Not applicable.
Not applicable.

Competing interests

The authors declare that they have no competing interests.
Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://​creativecommons.​org/​licenses/​by/​4.​0/​), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://​creativecommons.​org/​publicdomain/​zero/​1.​0/​) applies to the data made available in this article, unless otherwise stated.

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Metadaten
Titel
Genetic associations between Transcription Factor 7 Like 2 rs7903146 polymorphism and type 2 diabetes mellitus: a meta-analysis of 115,809 subjects
verfasst von
Liying Lou
Jingjing Wang
Jing Wang
Publikationsdatum
01.12.2019
Verlag
BioMed Central
Erschienen in
Diabetology & Metabolic Syndrome / Ausgabe 1/2019
Elektronische ISSN: 1758-5996
DOI
https://doi.org/10.1186/s13098-019-0451-9

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