nach oben

Erschienen in:

11.12.2019 | Brief Report

Genetic characterization of a novel recombinant echovirus 30 strain causing a regional epidemic of aseptic meningitis in Hokkaido, Japan, 2017

verfasst von: Masahiro Miyoshi, Akiko Goto, Rika Komagome, Hiroki Yamaguchi, Yuji Maruo, Masanori Nakanishi, Setsuko Ishida, Hideki Nagano, Takahisa Sugisawa, Motohiko Okano

Erschienen in: Archives of Virology | Ausgabe 2/2020

Einloggen, um Zugang zu erhalten

Abstract

A regional epidemic of aseptic meningitis caused by echovirus 30 (E30) occurred in Hokkaido, Japan, during the period of August-December 2017. To investigate their phylogenetic relationship to other human enteroviruses, we determined the complete genomic nucleotide sequences of isolates from this outbreak. Phylogenetic analysis of the viral capsid protein 1 gene showed that the strains were most closely related to E30 strains detected in Germany, France, and Russia in 2013. In contrast, the region encoding the viral protease and the RNA-dependent RNA polymerase had a close phylogenetic relationship to non-E30 enteroviruses detected in the United Kingdom and Switzerland in 2015-2017, suggesting that a recombination event had occurred.

Nur mit Berechtigung zugänglich

Adams MJ, Lefkowitz EJ, King AMQ et al (2017) Changes to taxonomy and the international code of virus classification and nomenclature ratified by the international committee on taxonomy of viruses. Arch Virol 162:2505–2538CrossRef

Lema C, Torres C, Van der Sanden S et al (2019) Global phylodynamics of Echovirus 30 revealed differential behavior among viral lineages. Virology 531:79–92CrossRef

Maruo Y, Nakanishi M, Suzuki Y et al (2019) Outbreak of aseptic meningitis caused by echovirus 30 in Kushiro, Japan in 2017. J Clin Virol 116:34–38CrossRef

Miyoshi M, Komagome R, Ishida S et al (2013) Genomic characterization of echovirus 6 causing aseptic meningitis in Hokkaido, Japan: a novel cluster in the nonstructural protein coding region of human enterovirus B. Arch Virol 158:775–784CrossRef

Yoshida H, Hong Z, Yoneyama T et al (1999) Phylogenic analysis of echovirus type 30 isolated from a large epidemic of aseptic meningitis in Japan during 1997–1998. Jpn J Infect Dis 52:160–163PubMed

Bailly JL, Mirand A, Henquell C et al (2009) Phylogeography of circulating populations of human echovirus 30 over 50 years: nucleotide polymorphism and signature of purifying selection in the VP1 capsid protein gene. Infect Genet Evol 9:699–708CrossRef

Chu PY, Tyan YC, Chen YS et al (2015) Transmission and Demographic Dynamics of Coxsackievirus B1. PLoS One 10:e0129272CrossRef

Tamura K, Peterson D, Peterson N et al (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739CrossRef

Felsenstein J (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783–791CrossRef

10.

Lole KS, Bollinger RC, Paranjape RS et al (1999) Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73:152–160CrossRef

11.

Dahm T, Adams O, Boettcher S et al (2018) Strain-dependent effects of clinical echovirus 30 outbreak isolates at the blood-CSF barrier. J Neuroinflammation 15:50CrossRef

12.

Lukashev AN, Lashkevich VA, Ivanova OE et al (2005) Recombination in circulating Human enterovirus B: independent evolution of structural and non-structural genome regions. J Gen Virol 86:3281–3290CrossRef

13.

National Institute of Infectious Diseases and Tuberculosis and Infectious Diseases Control Division, Ministry of Health, Labour and Welfare (2018) Viruses detected from aseptic meningitis patients in Japan, through 2017. Infect Agents Surveill Rep 39:1’(89’)-2’(90’) (Article in Japanese)

14.

Muckelbauer JK, Kremer M, Minor I et al (1995) The structure of coxsackievirus B3 at 3.5 Å resolution. Structure 3:653–667CrossRef

15.

Henquell C, Mirand A, Richter J et al (2013) Phylogenetic patterns of human coxsackievirus B5 arise from population dynamics between two genogroups and reveal evolutionary factors of molecular adaptation and transmission. J Virol 87:12249–12259CrossRef

16.

Palacios G, Casas I, Cistema D et al (2002) Molecular epidemiology of echovirus 30: temporal circulation and prevalence of single lineages. J Virol 76:4940–4949CrossRef

17.

Pulli T, Lankinen H, Roivainen M, Hyypiä T (1998) Antigenic sites of coxackievirus A9. Virology 240:202–212CrossRef

18.

Duncan IB (1968) A comparative study of 63 strains of ECHO virus type 30. Arch Gesamte Virusforsch 25:93–104CrossRef

19.

Wenner HA, Hamon P, Behbehani AM et al (1967) The antigenic heterogeneity of type 30 echoviruses. Am J Epidemiol 85:240–249CrossRef

20.

Sun Q, Zhang Y, Zhu S et al (2013) Transmission of human enterovirus 85 recombinants containing new unknown serotype HEV-B donor sequences in Xinjiang Uighur Autonomous Region, China. PLoS One 8:E55480CrossRef

21.

Chen Y, Sun Y, Yan J et al (2017) Molecular epidemiology and prevalence of echovirus 30 in Zhejiang Province, China, from 2002 to 2015. J Microbiol Biotechnol 27:2221–2227CrossRef

22.

Cabrerizo M, Echevarria JE, González I et al (2008) Molecular epidemiological study of HEV-B enteroviruses involved in the increase in meningitis cases occurred in Spain during 2006. J Med Virol 80:1018–1024CrossRef

23.

Zhang H, Zhao Y, Liu H et al (2017) Molecular characterization of two novel echovirus 18 recombinants associated with hand-foot-mouth disease. Sci Rep 7:8448CrossRef

24.

Shen H (2018) Recombination analysis of coxsackievirus B5 genogroup C. Arch Virol 163:539–544CrossRef

25.

Shen H, Liu T, Luo Y et al (2018) Echovirus plays major roles in the natural recombination of Coxsackievirus B3. J Med Virol 90:377–382CrossRef

26.

Kyriakopoulou Z, Amoutzias GD, Dimitriou TG et al (2018) Intra- and inter-serotypic recombinations in the 5’UTR-VP4 region of Echovirus 30 strains. Arch Virol 163:365–375CrossRef

27.

Pu X, Qian Y, Yu Y et al (2019) Echovirus plays a major role in natural recombination in the coxsackievirus B group. Arch Virol 164:853–860CrossRef

28.

McWilliam Leitch EC, Bendig J, Cabrerizo M et al (2009) Transmission networks and population turnover of echovirus 30. J Virol 83:2109–2118CrossRef

29.

Nougairede A, Bessaud M, Thiberville SD et al (2014) Widespread circulation of a new echovirus 30 variant causing aseptic meningitis and non-specific viral illness, South-East France, 2013. J Clin Virol 61:118–124CrossRef

30.

Savolainen-Kopra C, Paananen A, Blomqvist S et al (2011) A large Finnish echovirus 30 outbreak was preceded by silent circulation of the same genotype. Virus Genes 42:28–36CrossRef

31.

Iwai M, Yoshida H, Matsuura K et al (2006) Molecular epidemiology of echoviruses 11 and 13, based on an environmental surveillance conducted in Toyama Prefecture, 2002-2003. Appl Environ Microbiol 72:6381–6387CrossRef

32.

Iwai M, Yoshida H, Obara M et al (2010) Widespread circulation of echovirus type 13 demonstrated by increased seroprevalence in Toyama, Japan, between 2000 and 2003. Clin Vaccine Immunol 17:764–770CrossRef

33.

Iwai M, Horimoto E, Obara M et al (2011) Endemic transmission of echovirus 30 in Toyama, Japan in 2010 is verified by environmental surveillance. Jpn J Infect Dis 64:165–167PubMed

34.

Sedmak G, Bina D, MacDonald J (2003) Assessment of an enterovirus sewage surveillance system by comparison of clinical isolates with sewage isolates from Milwaukee, Wisconsin, collected August 1994 to December 2002. Appl Environ Microbiol 69:7181–7187CrossRef

Titel: Genetic characterization of a novel recombinant echovirus 30 strain causing a regional epidemic of aseptic meningitis in Hokkaido, Japan, 2017
verfasst von: Masahiro Miyoshi
Akiko Goto
Rika Komagome
Hiroki Yamaguchi
Yuji Maruo
Masanori Nakanishi
Setsuko Ishida
Hideki Nagano
Takahisa Sugisawa
Motohiko Okano
Publikationsdatum: 11.12.2019
Verlag: Springer Vienna
Erschienen in: Archives of Virology / Ausgabe 2/2020
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-019-04484-7

Leitlinien kompakt für die Innere Medizin

Mit medbee Pocketcards sicher entscheiden.

^{Seit 2022 gehört die medbee GmbH zum Springer Medizin Verlag}

Kostenlos registrieren

Neu im Fachgebiet Innere Medizin

25.04.2024 | Hypotonie | Nachrichten

Update Innere Medizin

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.

Newsletter bestellen

Springer Medizin

Genetic characterization of a novel recombinant echovirus 30 strain causing a regional epidemic of aseptic meningitis in Hokkaido, Japan, 2017

Abstract

Leitlinien kompakt für die Innere Medizin

Neu im Fachgebiet Innere Medizin

Niedriger diastolischer Blutdruck erhöht Risiko für schwere kardiovaskuläre Komplikationen

Therapiestart mit Blutdrucksenkern erhöht Frakturrisiko

Adjuvante Immuntherapie verlängert Leben bei RCC

Alectinib verbessert krankheitsfreies Überleben bei ALK-positivem NSCLC

Update Innere Medizin

Springer Medizin

Abstract

Bitte loggen Sie sich ein, um Zugang zu diesem Inhalt zu erhalten

Weitere Artikel der Ausgabe 2/2020

Complete genome sequence of a novel victorivirus isolated from the sesame charcoal rot fungus Macrophomina phaseolina

Complete genome sequencing and genetic analysis of a Japanese porcine torovirus strain detected in swine feces

Phage vB_BmeM-Goe8 infecting Bacillus megaterium DSM319

Complete genome sequence of a novel polerovirus in Ornithogalum thyrsoides from South Africa

Molecular characterization of feline paramyxovirus in Japanese cat populations

miR-142a-3p promotes the proliferation of porcine hemagglutinating encephalomyelitis virus by targeting Rab3a

Leitlinien kompakt für die Innere Medizin

Neu im Fachgebiet Innere Medizin

Niedriger diastolischer Blutdruck erhöht Risiko für schwere kardiovaskuläre Komplikationen

Therapiestart mit Blutdrucksenkern erhöht Frakturrisiko

Adjuvante Immuntherapie verlängert Leben bei RCC

Alectinib verbessert krankheitsfreies Überleben bei ALK-positivem NSCLC

Update Innere Medizin