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Archives of Virology

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01.02.2020 | Brief Report

Genetic variability of pig and human rotavirus group A isolates from Slovakia

verfasst von: S. Salamunova, A. Jackova, T. Csank, R. Mandelik, J. Novotny, Z. Beckova, L. Helmova, S. Vilcek

Erschienen in: Archives of Virology | Ausgabe 2/2020

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Abstract

The aim of this work was the genetic typing of RVA isolates originating from pigs and human patients in Slovakia. Seventy-eight rectal swabs from domestic pigs and 30 stool samples from humans were collected. The whole VP7 (G genotypes), VP6 (I genotypes) and partial VP4 (P genotypes) ORFs were amplified by RT-PCR. Genetic variability was higher amongst porcine sequences, where four G genotypes (G3, G4, G5, G11), two P genotypes (P[6], P[13]) and one I5 genotype were detected. Human RVA strains were represented by two G genotypes (G1, G3), two I genotypes (I1, I2), and one P genotype (P[8]). Genetic analysis did not show a relationship between Slovakian porcine and human RVA strains, but phylogenetic grouping of some Slovakian porcine sequences with Hungarian human sequences in both G and P genotypes was observed.

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Papp H, László B, Jakab F et al (2013) Review of group A rotavirus strains reported in swine and cattle. Vet Microbiol 165:190–199. https://doi.org/10.1016/j.vetmic.2013.03.020 CrossRefPubMedPubMedCentral

Bányai K, László B, Duque J et al (2012) Systematic review of regional and temporal trends in global rotavirus strain diversity in the pre rotavirus vaccine era: Insights for understanding the impact of rotavirus vaccination programs. Vaccine 30:122–130. https://doi.org/10.1016/j.vaccine.2011.09.111 CrossRef

International Committee on Taxonomy of Viruses (ICTV). https://talk.ictvonline.org/taxonomy/. Accessed 19 Nov 2019

Bányai K, Kemenesi G, Budinski I et al (2017) Candidate new rotavirus species in Schreiber’s bats, Serbia. Infect Genet Evol 48:19–26. https://doi.org/10.1016/j.meegid.2016.12.002 CrossRefPubMed

Midgley SE, Bányai K, Buesa J et al (2012) Diversity and zoonotic potential of rotaviruses in swine and cattle across Europe. Vet Microbiol 156:238–245. https://doi.org/10.1016/j.vetmic.2011.10.027 CrossRefPubMed

Fields BN, Knipe DM, Howley PM et al (2007) Fields Virol, 5th edn. Lippincott- Raven, New York

Matthijnssens J, Ciarlet M, Heiman E et al (2008) Full genome-based classification of rotaviruses reveals a common origin between human Wa-like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J Virol 82:3204–3219. https://doi.org/10.1128/JVI.02257-07 CrossRefPubMedPubMedCentral

KU Leuven Rotavirus Classification Working Group: RCWG – Laboratory of Viral Metagenomics. https://rega.kuleuven.be/cev/viralmetagenomics/virus-classification/rcwg. Accessed 18 Mar 2019

Papp H, Borzák R, Farkas S et al (2013) Zoonotic transmission of reassortant porcine G4P[6] rotaviruses in Hungarian pediatric patients identified sporadically over a 15year period. Infect Genet Evol 19:71–80. https://doi.org/10.1016/j.meegid.2013.06.013 CrossRefPubMed

10.

Martella V, Bányai K, Matthijnssens J et al (2010) Zoonotic aspects of rotaviruses. Vet Microbiol 140:246–255. https://doi.org/10.1016/j.vetmic.2009.08.028 CrossRefPubMed

11.

Steyer A, Poljšak-Prijatelj M, Barlič-Maganja D, Marin J (2008) Human, porcine and bovine rotaviruses in Slovenia: evidence of interspecies transmission and genome reassortment. J Gen Virol 89:1690–1698. https://doi.org/10.1099/vir.0.2008/001206-0 CrossRefPubMed

12.

Do LP, Kaneko M, Nakagomi T et al (2017) Molecular epidemiology of Rotavirus A, causing acute gastroenteritis hospitalizations among children in Nha Trang, Vietnam, 2007-2008: Identification of rare G9P[19] and G10P[14] strains. J Med Virol 89:621–631. https://doi.org/10.1002/jmv.24685 CrossRefPubMed

13.

Ianiro G, Micolano R, Conte M et al (2019) Detection of an animal-derived G4P[6] group A rotavirus strain in a symptomatic child, in Italy. Virus Res 260:7–11. https://doi.org/10.1016/j.virusres.2018.11.003 CrossRefPubMed

14.

Jackova A, Sliz I, Mandelik R et al (2017) Porcine kobuvirus 1 in healthy and diarrheic pigs: Genetic detection and characterization of virus and co-infection with rotavirus A. Infect Genet Evol 49:73–77. https://doi.org/10.1016/j.meegid.2017.01.011 CrossRefPubMed

15.

Elschner M, Prudlo J, Hotzel H et al (2002) Nested reverse transcriptase-polymerase chain reaction for the detection of group A Rotaviruses. J Vet Med Ser B 49:77–81. https://doi.org/10.1046/j.1439-0450.2002.00510.x CrossRef

16.

Tamura K, Stecher G, Peterson D et al (2013) MEGA6: molecular evolutionary genetics analysis Version 6.0. Mol Biol Evol 30:2725–2729. https://doi.org/10.1093/molbev/mst197 CrossRefPubMedPubMedCentral

17.

Maes P, Matthijnssens J, Rahman M, Van Ranst M (2009) RotaC: a web-based tool for the complete genome classification of group A rotaviruses. BMC Microbiol 9:2–5. https://doi.org/10.1186/1471-2180-9-238 CrossRef

18.

Theuns S, Vyt P, Desmarets LMB et al (2016) Presence and characterization of pig group A and C rotaviruses in feces of Belgian diarrheic suckling piglets. Virus Res 213:172–183. https://doi.org/10.1016/j.virusres.2015.12.004 CrossRefPubMed

19.

Matthijnssens J, Ciarlet M, McDonald SM et al (2011) Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG). Arch Virol 156:1397–1413. https://doi.org/10.1007/s00705-011-1006-z CrossRefPubMedPubMedCentral

20.

Silva FDF, Espinoza LRL, Tonietti PO et al (2015) Whole-genomic analysis of 12 porcine group A rotaviruses isolated from symptomatic piglets in Brazil during the years of 2012–2013. Infect Genet Evol 32:239–254. https://doi.org/10.1016/j.meegid.2015.03.016 CrossRefPubMed

21.

Theuns S, Heylen E, Zeller M et al (2015) Complete genome characterization of recent and ancient belgian pig group A rotaviruses and assessment of their evolutionary relationship with human rotaviruses. J Virol 89:1043–1057. https://doi.org/10.1128/jvi.02513-14 CrossRefPubMed

Titel: Genetic variability of pig and human rotavirus group A isolates from Slovakia
verfasst von: S. Salamunova
A. Jackova
T. Csank
R. Mandelik
J. Novotny
Z. Beckova
L. Helmova
S. Vilcek
Publikationsdatum: 01.02.2020
Verlag: Springer Vienna
Erschienen in: Archives of Virology / Ausgabe 2/2020
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-019-04504-6

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Genetic variability of pig and human rotavirus group A isolates from Slovakia

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