Skip to main content
Erschienen in: Archives of Virology 1/2012

01.01.2012 | Annotated Sequence Record

Genomic analysis of bacteriophage ESP2949-1, which is virulent for Cronobacter sakazakii

verfasst von: Young-Duck Lee, Jin-Young Kim, Jong-Hyun Park, HyoIhl Chang

Erschienen in: Archives of Virology | Ausgabe 1/2012

Einloggen, um Zugang zu erhalten

Abstract

Virulent phage ESP2949-1, which was isolated from sewage, has an icosahedral head, a contractile tail, and a double-stranded DNA genome with a length of 49,116 bp with 50.09% G+C content. Phage ESP2949-1 showed 3% similarity to enterobacteria phage TLS. Bioinformatics analysis of the phage genome revealed 43 putative open reading frames (ORFs). Predicted protein products of the ORFs were determined and described. Based on its morphology, phage ESP2949-1 can be classified as a member of the family Myoviridae. To our knowledge, this is the first report of the genomic sequence and characterization of phage ESP2949-1 isolated from sewage.
Anhänge
Nur mit Berechtigung zugänglich
Literatur
1.
2.
Zurück zum Zitat Borysowski J, Weber-Dabrowska B, Górski A (2006) Bacteriophage endolysins as a novel class of antibacterial agents. Exp Biol Med 231:366–377 Borysowski J, Weber-Dabrowska B, Górski A (2006) Bacteriophage endolysins as a novel class of antibacterial agents. Exp Biol Med 231:366–377
3.
Zurück zum Zitat Dinnes J, Deeks J, Kunst H, Gibson A, Cummins E, Waugh N, Drobniewski F, Lalvani A (2007) A systematic review of rapid diagnostic tests for the detection of tuberculosis infection. Health Technol Assess 11(3):1–196PubMed Dinnes J, Deeks J, Kunst H, Gibson A, Cummins E, Waugh N, Drobniewski F, Lalvani A (2007) A systematic review of rapid diagnostic tests for the detection of tuberculosis infection. Health Technol Assess 11(3):1–196PubMed
4.
Zurück zum Zitat Farmer JJ, Asbury MA, Hickman FW, Brenner DJ (1980) The Enterobacteriaceae Study Group (USA): Enterobacter sakazakii: a new species of “Enterobacteriaceae” isolated from clinical specimens. Int J Syst Bacteriol 30:569–584CrossRef Farmer JJ, Asbury MA, Hickman FW, Brenner DJ (1980) The Enterobacteriaceae Study Group (USA): Enterobacter sakazakii: a new species of “Enterobacteriaceae” isolated from clinical specimens. Int J Syst Bacteriol 30:569–584CrossRef
5.
Zurück zum Zitat Friedemann M (2007) Enterobacter sakazakii in food and beverages (other than infant formula and milk powder). Int J Food Microbiol 116:1–10PubMedCrossRef Friedemann M (2007) Enterobacter sakazakii in food and beverages (other than infant formula and milk powder). Int J Food Microbiol 116:1–10PubMedCrossRef
6.
Zurück zum Zitat Greer GG (2005) Bacteriophage control of foodborne bacteria. J Food Prot 68:1102–1111PubMed Greer GG (2005) Bacteriophage control of foodborne bacteria. J Food Prot 68:1102–1111PubMed
7.
Zurück zum Zitat Hudson JA, Billington C, Carey-Smith G, Greening G (2005) Bacteriophages as biocontrol agents in food. J Food Prot 68:426–437PubMed Hudson JA, Billington C, Carey-Smith G, Greening G (2005) Bacteriophages as biocontrol agents in food. J Food Prot 68:426–437PubMed
8.
Zurück zum Zitat Nazarowec-White M, Faber JM (1997) Enterobacter sakazakii: a review. Int J Food Microbiol 34:103–113PubMedCrossRef Nazarowec-White M, Faber JM (1997) Enterobacter sakazakii: a review. Int J Food Microbiol 34:103–113PubMedCrossRef
9.
Zurück zum Zitat Katsura I, Hendrix RW (1984) Length determination in bacteriophage lambda tails. Cell 39:691–698PubMedCrossRef Katsura I, Hendrix RW (1984) Length determination in bacteriophage lambda tails. Cell 39:691–698PubMedCrossRef
10.
Zurück zum Zitat Kim KP, Klumpp J, Loessner MJ (2007) Enterobacter sakazakii bacteriophages can prevent bacterial growth in reconstituted infant formula. Int J Food Microbiol 115:195–203PubMedCrossRef Kim KP, Klumpp J, Loessner MJ (2007) Enterobacter sakazakii bacteriophages can prevent bacterial growth in reconstituted infant formula. Int J Food Microbiol 115:195–203PubMedCrossRef
11.
Zurück zum Zitat Kucerova E, Clifton SW, Xia XQ, Long F, Porwollik S, Fulton L, Fronick C, Minx P, Kyung K, Warren W, Fulton R, Feng D, Wollam A, Shah N, Bhonagiri V, Nash WE, Hallsworth-Pepin K, Wilson RK, McClelland M, Forsythe SJ (2010) Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species. PLoS One 8(5):e9556CrossRef Kucerova E, Clifton SW, Xia XQ, Long F, Porwollik S, Fulton L, Fronick C, Minx P, Kyung K, Warren W, Fulton R, Feng D, Wollam A, Shah N, Bhonagiri V, Nash WE, Hallsworth-Pepin K, Wilson RK, McClelland M, Forsythe SJ (2010) Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species. PLoS One 8(5):e9556CrossRef
12.
Zurück zum Zitat Lee SY, Jin HH (2008) Inhibitory activity of natural antimicrobial compounds alone or in combination with nisin against Enterobacter sakazakii. Lett Appl Microbiol 47:315–321PubMedCrossRef Lee SY, Jin HH (2008) Inhibitory activity of natural antimicrobial compounds alone or in combination with nisin against Enterobacter sakazakii. Lett Appl Microbiol 47:315–321PubMedCrossRef
13.
Zurück zum Zitat Lee YD, Chang HI, Park JH (2011) Complete genomic sequence of virulent Cronobacter sakazakii phage ESSI-2 isolated from swine feces. Arch Virol 156:721–724PubMedCrossRef Lee YD, Chang HI, Park JH (2011) Complete genomic sequence of virulent Cronobacter sakazakii phage ESSI-2 isolated from swine feces. Arch Virol 156:721–724PubMedCrossRef
14.
Zurück zum Zitat Lu TK, Collins JJ (2007) Dispersing biofilms with engineered enzymatic bacteriophage. Proc Natl Acad Sci USA 104:11197–11202PubMedCrossRef Lu TK, Collins JJ (2007) Dispersing biofilms with engineered enzymatic bacteriophage. Proc Natl Acad Sci USA 104:11197–11202PubMedCrossRef
15.
Zurück zum Zitat Manfioletti G, Schneider C (1988) A new and fast method for preparing high quality lambda DNA suitable for sequencing. Nucleic Acids Res 16:2873–2884PubMedCrossRef Manfioletti G, Schneider C (1988) A new and fast method for preparing high quality lambda DNA suitable for sequencing. Nucleic Acids Res 16:2873–2884PubMedCrossRef
16.
Zurück zum Zitat NACMCF (National Advisory Committee on Microbiological Criteria of Foods) (1999) Microbiological evaluations and recommendations on sprouted seeds. Int J Food Microbiol 52:123–153CrossRef NACMCF (National Advisory Committee on Microbiological Criteria of Foods) (1999) Microbiological evaluations and recommendations on sprouted seeds. Int J Food Microbiol 52:123–153CrossRef
17.
Zurück zum Zitat Ponting CP, Aravind L, Schultz J, Bork P, Koonin EV (1999) Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer. J Mol Biol 289:729–745PubMedCrossRef Ponting CP, Aravind L, Schultz J, Bork P, Koonin EV (1999) Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer. J Mol Biol 289:729–745PubMedCrossRef
18.
Zurück zum Zitat Sambrook J, Russel DW (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, New York Sambrook J, Russel DW (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, New York
19.
Zurück zum Zitat Sulakvelidze A, Alavidze Z, Morris JG (2001) Bacteriophage therapy. Antimicrob Agents Chemother 45:649–659PubMedCrossRef Sulakvelidze A, Alavidze Z, Morris JG (2001) Bacteriophage therapy. Antimicrob Agents Chemother 45:649–659PubMedCrossRef
20.
Zurück zum Zitat Wood WB, Conley MP, Lyle HL, Dickson RC (1978) Attachment of tail fibers in bacteriophage T4 assembly. J Biol Chem 253:2437–2445PubMed Wood WB, Conley MP, Lyle HL, Dickson RC (1978) Attachment of tail fibers in bacteriophage T4 assembly. J Biol Chem 253:2437–2445PubMed
21.
Zurück zum Zitat Yu J, Moffitt J, Hetherington CL, Bustamante C, Oster G (2010) Mechanochemistry of a viral DNA packaging motor. J Mol Biol 400:186–203PubMedCrossRef Yu J, Moffitt J, Hetherington CL, Bustamante C, Oster G (2010) Mechanochemistry of a viral DNA packaging motor. J Mol Biol 400:186–203PubMedCrossRef
22.
Zurück zum Zitat Ziegelin G, Scherzinger E, Lurz R, Lanka E (1993) Phage P4 alpha protein is multifunctional with origin recognition, helicase and primase activities. EMBO J 12:3703–3708PubMed Ziegelin G, Scherzinger E, Lurz R, Lanka E (1993) Phage P4 alpha protein is multifunctional with origin recognition, helicase and primase activities. EMBO J 12:3703–3708PubMed
Metadaten
Titel
Genomic analysis of bacteriophage ESP2949-1, which is virulent for Cronobacter sakazakii
verfasst von
Young-Duck Lee
Jin-Young Kim
Jong-Hyun Park
HyoIhl Chang
Publikationsdatum
01.01.2012
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 1/2012
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-011-1147-0

Weitere Artikel der Ausgabe 1/2012

Archives of Virology 1/2012 Zur Ausgabe

Leitlinien kompakt für die Innere Medizin

Mit medbee Pocketcards sicher entscheiden.

Seit 2022 gehört die medbee GmbH zum Springer Medizin Verlag

Update Innere Medizin

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.