Background
Methods
Bacterial strains
Strain | Source (isolation date) | Malonate utilizeda | Serotype | Sequence type | Clonal complex | Draft genome size (bp) | G+C content (%) | Contigs | CDS | NCBI accession no. |
---|---|---|---|---|---|---|---|---|---|---|
7405-71-1A (Comp 11) | Environmental, compliance activity (2014), USA | (+) | Csak O:2 | 64 | 64 | 4,432,172 | 56.74 | 124 | 4104 | NHQL00000000 |
7405-68-2 (Comp 19) | Environmental, compliance activity (2014), USA | (+) | Csak O:2 | 64 | 64 | 4,537,591 | 56.85 | 121 | 4205 | NHQM00000000 |
7405-71-1B (Comp 20) | Environmental, compliance activity (2014), USA | (+) | Csak O:2 | 64 | 64 | 4,564,009 | 56.77 | 190 | 4228 | NEXY00000000 |
867009 DFI106-1 (Comp 45) | Environmental, compliance activity (2014), USA | (+) | Csak O:2 | 64 | 64 | 4,731,392 | 56.8 | 117 | 4213 | NEXZ00000000 |
867009 RF106-1 (Comp 46) | Environmental, compliance activity (2014), USA | (+) | Csak O:2 | 64 | 64 | 4,728,640 | 56.77 | 107 | 4407 | NEYA00000000 |
7405-80-2 (Comp 49) | Environmental, compliance activity (2014), USA | (+) | Csak O:2 | 64 | 64 | 4,498,706 | 56.9 | 108 | 4159 | NEYB00000000 |
7405-68-4 (Comp 53) | Environmental, compliance activity (2014), USA | (+) | Csak O:2 | 64 | 64 | 4,545,852 | 56.8 | 101 | 4,177 | NEYC00000000 |
7405-75-1 (Comp 54) | Environmental, compliance activity (2014), USA | (+) | Csak O:2 | 64 | 64 | 4,540,274 | 57 | 135 | 4210 | NEYD00000000 |
7405-75-2 (Comp 57) | Environmental, compliance activity (2014), USA | (+) | Csak O:2 | 64 | 64 | 4,538,462 | 56.8 | 101 | 4200 | NEYE00000000 |
0210ELJ 72-1 (Comp 59) | Environmental, compliance activity (2014), USA | (+) | Csak O:2 | 64 | 64 | 4,649,928 | 56.5 | 173 | 4310 | NEYF00000000 |
CDC 1121-73c | Human, clinical Bronchial. wash (1973), USA | (+) | Csak O:2 | 64 | 64 | 4,443,589 | 57 | 238 | 4112 | MCOD00000000 |
GK 1025c | Environmental, PIF manufacturing facility (2015), Germany | (+) | Csak O:2 | 64 | 64 | 4,599,266 | 56.7 | 94 | 4295 | MCOE00000000 |
GK 1026 | Environmental, PIF manufacturing facility (2015), Germany | (+) | Csak O:2 | 64 | 64 | 4,603,121 | 56.73 | 126 | 4298 | NEYG00000000 |
GK 1027 | Environmental, PIF manufacturing facility (2015), Germany | (+) | Csak O:2 | 64 | 64 | 4,603,249 | 56.7 | 34 | 4304 | NHQN00000000 |
GK 1028 | Environmental, PIF manufacturing facility (2015), Germany | (+) | Csak O:2 | ND | ND | ND | ND | ND | ND | Not Yet Submitted |
GK 1029 | Environmental, PIF manufacturing facility (2015), Germany | (+) | Csak O:2 | 64 | 64 | 4,589,912 | 56.7 | 95 | 4292 | NHQO00000000 |
GK 1030 | Environmental, PIF manufacturing facility (2015), Germany | (+) | Csak O:2 | 64 | 64 | 4,601,082 | 56.7 | 37 | 4286 | NHQP00000000 |
GK 1034 | Environmental, PIF manufacturing facility (2015), Germany | (+) | Csak O:2 | 64 | 64 | 4,604,244 | 56.7 | 29 | 4296 | NHQQ00000000 |
GK 1035 | Environmental, PIF manufacturing facility (2015), Germany | (+) | Csak O:2 | 64 | 64 | 4,597,230 | 56.7 | 50 | 4282 | NHQR00000000 |
GK 1326 | Environmental, PIF manufacturing facility (2015), Germany | (+) | Csak O:2 | 64 | 64 | 4,423,544 | 56.73 | 153 | 4096 | NEYH00000000 |
E772 | Milk powder, France | (+) | Csak O:2 | 64 | 64 | 4,537,187 | 56.8 | 351 | 4163 | NHQS00000000 |
H169/1/16 | Environmental, PIF manufacturing facility (2012), Switz | (+) | Csak O:2 | 64 | 64 | 4,474,959 | 57 | 32 | 4139 | NHTV00000000 |
Jor172 | Food, spices, Jordan | (+) | Csak O:2 | 64 | 64 | 4,330,450 | 57 | 25 | 4000 | NCWD00000000 |
Cro2819A3c | Mushroom (2017), China | ND | ND | 64 | 64 | 4,725, 000 | 57.2 | 168 | 3994 | NZMBSC00000000 |
C. universalis NCTC9529T | Water, (1956), UK | (+) | Cuni O:1 | 54 | Unknownb | 4,388,239 | 55.79 | 16 | 3977 | CAKX00000000 |
C. condimenti LMG26250T | Fermented spiced sausage, (2010), Slovakia | (+) | Unknown | 98 | Unknownb | 4,480,620 | 55.8 | 155 | 4169 | CAKW00000000 |
C. dublinensis LMG23823T | Environmental, milk powder manufacturing plant (2004), Ireland | (+) | Cdub O:1 | 106 | Unknownb | 4,644,913 | 56.16 | 41 | 4172 | CP012266 |
C. malonaticus LMG23826T | Clinical, breast abscess (1977), USA | (+) | Cmal O:2 | 7 | 7 | 4,419,871 | 54.9 | 69 | 4041 | CP013940 |
C. turicensis LMG23827T | Clinical, blood (2005), Switzerland | (+) | Ctur O:1 | 19 | 24 | 4,599,092 | 57.2 | 1 | 4296 | FN543093 |
C. muytjensii 51329T | Unknown, USA | (+) | Cmuy O:2 | 81 | 81 | 4,355,922 | 56.17 | 32 | 3973 | CP012268 |
C. sakazakii BAA-894 | Infant formula (2001), USA | (−) | Csak O:1 | 1 | 1 | 4,530,777 | 56.7 | 4211 | CP000783 |
DNA extraction and genome sequencing and analysis
Microarray design, hybridization, and analysis
ZebraFish infection studies
Nucleotide sequence accession numbers
Results and discussion
Identities and general features of malonate-positive, ST64 C. sakazakii strains
Malonate utilization among C. sakazakii O:2, ST64 strains compared to other Cronobacter strains
Characterization of RepFIB plasmids and pESA3-specific gene targets among C. sakazakii O:2, ST64 strains compared to other Cronobacter strains
Strain | Plasmidotyping results by PCR analysis according to Franco et al. [22] | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
pESA3/p CTU1 incFIB |
eit
|
iuc
|
Cdiuc
|
cpa
|
Δcpa
| ΔT6SS | T6SS IntL |
vgrG
| T6SS R end | T6SS IntR |
Δfha
|
fha
|
dfha
| pESA2 IncF2 | pCTU3 H1 |
zpx
| |
7405-71-1A (Comp 11) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (–) | (+) |
7405-68-2 (Comp 19) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (–) | (+) |
7405-71-1B (Comp 20) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (–) | (+) |
867009 DFI106-1 (Comp 45) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (–) | (+) |
867009 RF106-1 (Comp 46) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (–) | (+) |
7405-80-2 (Comp 49) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (–) | (+) |
7405-68-4 (Comp 53) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (–) | (+) |
7405-75-1 (Comp 54) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (–) | (+) |
844916-23 (Comp 55) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (–) | (+) |
7405-75-2 (Comp 57) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (–) | (+) |
0210ELJ 72-1 (Comp 59) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (+) | (+) |
CDC 1121-73 | (+) | (+) | (+) | (–) | (+) | (–) | (–) | (+) | (+) | (+) | (–) | (+) | (–) | (–) | ND | ND | (+) |
GK 1025* | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (–) | (+) | (–) | (+) | ND | ND | (+) | (+) | (+) |
GK 1026* | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (–) | (+) | (–) | (+) | ND | ND | (–) | (–) | (+) |
GK 1027 | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (–) | (+) | (–) | (+) | ND | ND | (–) | (–) | (+) |
GK 1028 | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (–) | (+) | (–) | (+) | ND | ND | (–) | (–) | (+) |
GK 1029 | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (–) | (+) | (–) | (+) | ND | ND | (–) | (–) | (+) |
GK 1030 | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (–) | (+) | (–) | (+) | ND | ND | (–) | (–) | (+) |
GK 1034 | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (–) | (+) | (–) | (+) | ND | ND | (–) | (–) | (+) |
GK 1035 | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (–) | (+) | (–) | (+) | ND | ND | (–) | (–) | (+) |
GK 1326 | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (–) | (–) | (–) | (+) | ND | ND | (–) | (–) | (+) |
E722 | (+) | (+) | (+) | (–) | (+) | (–) | (–) | (+) | (–) | (+) | (–) | (+) | (–) | (–) | (–) | (–) | (+) |
H169/1/16 | (+) | (+) | (+) | ND | (+) | ND | ND | (+) | (–) | (+) | (–) | (+) | (–) | ND | (–) | (–) | ND |
Jor172 | (+) | (+) | (+) | (–) | (+) | (–) | (–) | (+) | (–) | (–) | (–) | (+) | (–) | (–) | (–) | (–) | (+) |
C. universalis NCTC9529T | (+) | (+) | (+) | (–) | (+) | (–) | (+) | (–) | (–) | (–) | (–) | (–) | (+) | (–) | (–) | (–) | (+) |
C. condimenti LMG26250T | (+) | (+) | (+) | (+) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | ND | ND | (–) |
C. dublinensis subspp. dublinensis LMG23823T | (+) | (+) | (+) | (+) | (–) | (+) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (+) | (–) | (–) | (+) |
C. malonaticus LMG23826T | (+) | (+) | (+) | (–) | (–) | (+) | (+) | (–) | (–) | (–) | (–) | (–) | (+) | (–) | (–) | (+) | (+) |
C. turicensis LMG23827T | (+) | (+) | (+) | (–) | (–) | (+) | (+) | (–) | (–) | (–) | (–) | (–) | (+) | (–) | (+) | (+) | (+) |
C. muytjensii 51329T | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (+) |
C. sakazakii BAA-894 | (+) | (+) | (+) | (–) | (+) | (–) | (–) | (+) | (+) | (+) | (+) | (+) | (–) | (–) | (+) | (–) | (+) |
Phylogenetic analysis of malonate positive Csak ST64 strains
Strain name | Species | Source | Serotype | MLST |
---|---|---|---|---|
LMG26520T |
C. condimenti
| Food, spiced sausage, Slovakia | ND | 98 |
KW5 |
C. dublinensis
| Food, black rice, Republic of Korea | Cdub O:1 | ND |
3_27 |
C. dublinensis
| Food, nuts, Republic of Korea | Cdub O:1 | ND |
2_14 |
C. dublinensis
| Food, nuts, Republic of Korea | Cdub O:1 | ND |
CFS237 |
C. dublinensis
| Environmental, milk production facility, Ireland | Cdub O:1 | 106 |
Comp56 |
C. dublinensis
| Environmental, compliance activity, USA | Cdub O:1 | ND |
5960_70 |
C. dublinensis
| Clinical, blood | ND | 5 |
SUN_1 |
C. dublinensis
| Food, taro, Republic of Korea | ND | ND |
6_3G |
C. dublinensis
| Food, nuts, Republic of Korea | Cdub O:1 | ND |
6_15G |
C. dublinensis
| Food, nuts, Republic of Korea | Cdub O:2 | ND |
464 |
C. dublinensis
| Environmental, milk production facility | ND | 79 |
E515C |
C. dublinensis
| Environmental, water fountain basin | Cdub O:2 | 80 |
J160 |
C. malonaticus
| Environmental, vacuum dust, Jordan | Csak O:2 | ND |
J168B |
C. malonaticus
| Environmental, vacuum dust, Jordan | Csak O:2 | ND |
GK1349 |
C. malonaticus
| PIF Facility; Hanover, Germany | Csak O:5 | ND |
GK1354 |
C. malonaticus
| PIF Facility; Hanover, Germany | Csak O:5 | ND |
GK1355 |
C. malonaticus
| PIF Facility; Hanover, Germany | Csak O:5 | ND |
GK1356 |
C. malonaticus
| PIF Facility; Hanover, Germany | Csak O:5 | ND |
GK1357 |
C. malonaticus
| PIF Facility; Hanover, Germany | Csak O:5 | ND |
GK1358 |
C. malonaticus
| PIF Facility; Hanover, Germany | Csak O:5 | ND |
GK1360 |
C. malonaticus
| PIF Facility; Hanover, Germany | Csak O:5 | ND |
GK1510 |
C. malonaticus
| PIF Facility; Hanover, Germany | Csak O:5 | ND |
GK1512 |
C. malonaticus
| PIF Facility; Hanover, Germany | Csak O:5 | ND |
GK1518 |
C. malonaticus
| PIF Facility; Hanover, Germany | Csak O:5 | ND |
GK796A_2 |
C. malonaticus
| PIF Facility; Hanover, Germany | Csak O:5 | ND |
Sh41g |
C. malonaticus
| Fly, Sarcophaga haemorrhoidalis, gut, USA | ND | ND |
Md99g |
C. malonaticus
| Fly, Musca domestica, gut, USA | Cmal O:1 | 60 |
CI825 |
C. malonaticus
| Clinical, breast abcess, USA | Cmal O:2 | 7 |
Md25g |
C. malonaticus
| Fly, Musca domestica, gut, USA | Cmal O:2 | 7 |
51329 |
C. muytjensii
| Unknown | Cmuy O:2 | 81 |
J112 |
C. muytjensii
| Food, liquorice, Jordan | ND | ND |
GK1257 |
C. muytjensii
| PIF Facility; Hanover, Germany | ND | ND |
J171 |
C. muytjensii
| Food, spices (Fennel), Jordan | ND | ND |
GK1258 |
C. muytjensii
| PIF Facility; Hanover, Germany | Csak O:1 | ND |
J174 |
C. muytjensii
| Food, spices (Anise), Jordan | Cmuy O:1 | ND |
J176 |
C. muytjensii
| Food, spices (Thyme), Jordan | ND | ND |
J77 |
C. muytjensii
| Food, spices (Anise), Jordan | Cmuy O:2 | ND |
J95 |
C. muytjensii
| Food, spices (Anise), Jordan | ND | ND |
J100 |
C. sakazakii
| Food, semolina, Jordan | Csak O:2 | ND |
J103 |
C. sakazakii
| Food, spices, Jordan | Csak O:2 | ND |
J109 |
C. sakazakii
| Food, grapes, Jordan | Csak O:2 | ND |
J146 |
C. sakazakii
| Food, liquorice, Jordan | Csak O:2 | ND |
GK1025 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | 64 |
GK1027 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | 64 |
J148 |
C. sakazakii
| Food, spices, Jordan | Csak O:2 | 4 |
BAA894 |
C. sakazakii
| PIF, USA | Csak O:1 | 1 |
GK1028 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | 64 |
GK1030 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | 64 |
GK1032 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:1 | ND |
J151 |
C. sakazakii
| Food, spices (Fennel), Jordan | Csak O:1 | ND |
J154 |
C. sakazakii
| Food, spices, Jordan | Csak O:3 | 4 |
3_21 |
C. sakazakii
| Food, nuts, Republic of Korea | Csak O:1 | ND |
GK1033 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | ND |
GK1034 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | 64 |
GK1035 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | 64 |
GK1036 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | ND |
GK1151 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:7 | ND |
GK1152 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | ND |
GK1153 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | ND |
E654 |
C. sakazakii
| Clinical, Ireland | Csak O:1 | 1 |
E657 |
C. sakazakii
| Clinical, Ireland | Csak O:1 | 1 |
GK1154 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | ND |
E760 |
C. sakazakii
| Clinical, Ireland | Csak O:2 | 264 |
GK1155 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | ND |
CDC1121_73 |
C. sakazakii
| Clinical, bronchial wash, USA | Csak O:2 | 64 |
GK1156 |
C. sakazakii
| PIF Facility, Hanover, Germany | Cmal O:2 | ND |
GK1157 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak o:2 | 4 |
E772 |
C. sakazakii
| Food, milk powder, France | Csak O:2 | 64 |
GK1158 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | 4 |
GK1159 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | 4 |
5_21G |
C. sakazakii
| Food, nuts, Republic of Korea | Csak O:2 | ND |
5_20G |
C. sakazakii
| Food, nuts, Republic of Korea | Csak O:2 | ND |
1_15 |
C. sakazakii
| Food, nuts, Republic of Korea | Csak O:2 | ND |
KW10 |
C. sakazakii
| Food, powdered pine needles, Republic of Korea | Csak O:2 | ND |
J172 |
C. sakazakii
| Food, spices, Jordan | Csak O:2 | ND |
Es35 |
C. sakazakii
| Clinical, Israel | Csak O:1 | 8 |
5_17G |
C. sakazakii
| Food, nuts, Republic of Korea | Csak O:1 | ND |
J173 |
C. sakazakii
| Food, spices, Jordan | Csak O:1 | ND |
E755 |
C. sakazakii
| Clinical, Ireland | Csak O:4 | 8 |
E758 |
C. sakazakii
| Clinical, Ireland | Csak O:4 | 8 |
E756 |
C. sakazakii
| Clinical, Ireland | Csak O:4 | 8 |
A48g |
C. sakazakii
| Fly, Anthimylidae, gut, USA | Csak O:6 | 221 |
E656 |
C. sakazakii
| Clinical, Ireland | Csak O:1 | 8 |
J175 |
C. sakazakii
| Food, spices, Jordan | Csak O:1 | ND |
2193_16_02 |
C. sakazakii
| Food, nursery water, USA | Csak O:1 | 8 |
2193_16_02_2 |
C. sakazakii
| Food, nursery water, USA | Csak O:1 | 8 |
2193_08 |
C. sakazakii
| Food, nursery water, USA | Csak O:1 | 8 |
18_01 |
C. sakazakii
| Patient, stool sample, USA | Csak O:1 | 4 |
18_05_03 |
C. sakazakii
| Food, opened can of PIF, USA | Csak O:1 | 8 |
18_07 |
C. sakazakii
| Patient, stool sample, USA | Csak O:1 | 8 |
29544T |
C. sakazakii
| Clinical (child), throat swab, USA | Csak O:1 | 8 |
701753 |
C. sakazakii
| Environmental, PIF plant, USA | Csak O:2 | 31 |
KW11 |
C. sakazakii
| Food, black bean, Republic of Korea | Csak O:4 | ND |
CI764 |
C. sakazakii
| Clinical, Ireland | Csak O:4 | 12 |
GK1260 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:1 | 1 |
E837 |
C. sakazakii
| Clinical, Ireland | Csak O:2 | ND |
J183 |
C. sakazakii
| Food, spices, Jordan | Csak O:1 | 21 |
J20 |
C. sakazakii
| Food, spices, Jordan | Csak O:1 | ND |
J204_2 |
C. sakazakii
| Food, liquorice, Jordan | Csak O:7 | 223 |
J22 |
C. sakazakii
| Food, spice (Chamomile), Jordan | Csak O:1 | ND |
J32 |
C. sakazakii
| Food, baby food, Jordan | Csak O:3 | ND |
J44 |
C. sakazakii
| Food, spices, Jordan | Csak O:1 | ND |
2156_3 |
C. sakazakii
| Clinical, blood, USA | Csak O:3 | 4 |
GK1263B2 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | 4 |
GK1264 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | 4 |
GK1265 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | ND |
GK1266A2 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | ND |
GK1312 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | ND |
GK1314 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | ND |
GK1315 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | ND |
GK1316 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:7 | ND |
GK1317 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | ND |
GK1318 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | ND |
GK1319 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | ND |
GK1320 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | ND |
GK1322 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | ND |
GK1322A_2 |
C. sakazakii
| PIF Facility; Hanover, Germany | ND | ND |
GK1328B_2 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | ND |
GK1351 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:1 | ND |
206 N |
C. sakazakii
| Clinical, Ireland | Csak O:2 | 4 |
306 N |
C. sakazakii
| Clinical, Ireland | Csak O:2 | 4 |
255 N |
C. sakazakii
| Clinical, Ireland | Csak O:2 | 4 |
E788 |
C. sakazakii
| Clinical, Ireland | Csak O:2 | 4 |
GK1352 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:1 | ND |
2193_03 |
C. sakazakii
| Clinical, CSF, USA | Csak O:2 | 4 |
4_01C_5ug |
C. sakazakii
| Food, PIF | Csak O:2 | 218 |
E899 |
C. sakazakii
| Clinical, USA | Csak O:2 | 4 |
2151 |
C. sakazakii
| Clinical, USA | Csak O:2 | 4 |
GK1511 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:1 | ND |
GK1513 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:1 | ND |
2193_02 |
C. sakazakii
| Clinical, sputum, USA | Csak O:2 | 4 |
9368_75 |
C. sakazakii
| Unknown | Csak O:2 | 4 |
9369_75 |
C. sakazakii
| Unknown | Csak O:4 | 4 |
GK1519 |
C. sakazakii
| PIF Facility; Hanover, Germany | csak O:1 | ND |
GK1520 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:1 | ND |
GK1521 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:1 | ND |
GK1574 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:4 | ND |
J93 |
C. sakazakii
| Food, spices, Jordan | Csak O:2 | ND |
E893 |
C. sakazakii
| Clinical, Ireland | Csak O:2 | 4 |
GK1576 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:1 | ND |
GK792_3 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:7 | 83 |
GK793 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:1 | 1 |
GK794 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:7 | 83 |
J96 |
C. sakazakii
| Food, spices (Fennel), Jordan | Csak O:3 | ND |
GK797 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:7 | ND |
GK798 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | 4 |
GK799AB_3F |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:7 | 83 |
GK800 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:7 | 83 |
GK801 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | 4 |
GK951 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | 4 |
GK952 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | 4 |
GK954 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | 4 |
GK956 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | 4 |
GK958 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | 4 |
GK959 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | 4 |
GK960 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:1 | ND |
GK961 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | 4 |
GK963_1 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | ND |
GK964 |
C. sakazakii
| PIF Facility; Hanover, Germany | Csak O:2 | 4 |
680 |
C. turicensis
| Food, unspecified | ND | 48 |
797 |
C. universalis
| Environmental, water, UK | Cuni O:1 | 54 |
Md1 s |
C. turicensis
| Fly, Musca domestica, surface, USA | ND | 7 |
2_15 |
C. turicensis
| Food, nuts, Republic of Korea | ND | ND |
Sh41 s |
C. turicensis
| Fly, Sarcophaga haemorrhoidalis, gut, USA | ND | ND |
3_24 |
C. turicensis
| Food, nuts, Republic of Korea | Csak O:5 | ND |
5_15G |
C. turicensis
| Food, nuts, Republic of Korea | Csak O:5 | ND |
Comp12 |
C. turicensis
| Environmental, compliance activity, USA | ND | 24 |
Comp44 |
C. turicensis
| Environmental, compliance activity, USA | ND | 24 |
Comp66 |
C. turicensis
| Environmental, compliance activity, USA | Ctur O:1 | ND |
3032 |
C. turicensis
| Clinical (neonate), blood, Switz. | Ctur O:1 | 19 |
576 |
C. freundii
| Unknown | ND | ND |
CQ118 |
E. hormaechei
| PIF Facility; Dublin Ireland | ND | ND |
1159/04 |
F. helveticus
| LMG 23733, fruit punch powder, Switz. | ND | ND |
513/05T |
F. helveticus
| LMG 23732T, fruit punch powder, Switz. | ND | ND |
1160/04 |
F. pulveris
| LMG 24058, fruit punch powder, Switz. | ND | ND |
601/05T |
F. pulveris
| LMG 24057T, fruit punch powder, Switz. | ND | ND |
508/05T |
S. turicensis
| LMG 23730T, fruit punch powder, Switz. | ND | ND |
214 |
K. pneumoniae
| Unknown | ND | ND |
SalSTM |
Salmonella typhimurium
| Unknown | ND | ND |
GK1313 | Non-Cronobacter | PIF Facility; Hanover, Germany | ND | ND |
GK792_1 | Non-Cronobacter | PIF Facility; Hanover, Germany | ND | ND |
GK792_2 | Non-Cronobacter | PIF Facility; Hanover, Germany | ND | ND |
GK795 | Non-Cronobacter | PIF Facility; Hanover, Germany | ND | ND |
GK963_2 | Non-Cronobacter | PIF Facility; Hanover, Germany | ND | ND |