Genotype analysis of severe fever with thrombocytopenia syndrome viruses in Gyeonggi Province of South Korea from 2017 to 2022
- Open Access
- 01.11.2025
- Brief Report
Abstract
Introduction
Materials and methods
Specimen collection
Patient information
Detection of SFTSV by real-time RT-PCR
Nested RT-PCR for the M segment of SFTSV
Target gene | PCR step | Primer | Sequence | Amplicon size |
|---|---|---|---|---|
SFTSV M segment | 1 st PCR | MF3 | GAT GAG ATG GTC CAT GCT GAT TCT | 560 bp |
MR2 | CTC ATC GGG TGG AAT GTC CTC AC | |||
2nd PCR | For | TAA ACT TGT GTC GTG CAG GC | 245 bp | |
Rev | CCC AGC GAC ATC TCC TTA CA |
Genomic sequencing and phylogenetic analysis
Results
Detection of SFTSV and identification of genotypes circulating from 2017 to 2022
2017 | 2018 | 2019 | 2020 | 2021 | 2022 | Total | |
|---|---|---|---|---|---|---|---|
No. of specimens | 205 | 297 | 167 | 140 | 260 | 230 | 1,299 |
No. of positive results | 24 | 27 | 19 | 21 | 23 | 12 | 126 |
Positivity rate | 11.7% | 9.1% | 11.4% | 15.0% | 8.8% | 5.2% | 10.2% |
SFTSV genotype/year | 2017 | 2018 | 2019 | 2020 | 2021 | 2022 | Total |
|---|---|---|---|---|---|---|---|
A | 0 | ||||||
B-1 | 16 (3) | 18 (3) | 14 (1) | 14 (4) | 16 (2) | 7 (1) | 85 |
B-2 | 4 (0) | 3 (1) | 1 | 2 | 4 | 2 | 16 |
B-3 | 0 | ||||||
C | 1 | 1 | |||||
D | 1 | 1 | |||||
E | 0 | ||||||
F | 2 | 1 | 1 | 1 (1) | 5 | ||
Not genotyped | 1 | 4 | 4 (2) | 4 (1) | 2 | 3 (1) | 18 |
Total | 24 | 27 | 19 | 21 | 23 | 12 | 126 |
Analysis of SFTS fatalities by SFTSV genotype
Genotype | Fatal (%) | Non-Fatal (%) | N/A*(%) | Total |
|---|---|---|---|---|
B-1 | 14 (16.5) | 57 (67.1) | 14 (16.3) | 85 |
B-2 | 1 (6.3) | 11 (68.8) | 4 (25.0) | 16 |
C | - | 1 (100.0) | - | 1 |
D | - | 1 (100.0) | - | 1 |
F | 1 (20.0) | 4 (80.0) | - | 5 |
Total | 16 (14.8) | 74 (68.5) | 18 (16.7) | 108 |
Distribution of SFTSV genotypes in northern Gyeonggi province
Analysis of case-fatality rates in SFTSV-positive patients according to age
Age group | Fatal (%) | Non-fatal (%) | N/A*(%) | Total |
|---|---|---|---|---|
30–49 years old | 4 (80.0) | 1 (20.0) | 5 | |
50–59 years old | 19 (76) | 6 (24) | 25 | |
60–69 years old | 5 (12.8) | 31 (79.5) | 3 (7.7) | 39 |
70–79 years old | 7 (20.6) | 19 (55.9) | 8 (23.5) | 34 |
80–99 years old | 8 (34.8) | 11 (47.8) | 4 (17.4) | 23 |
Total | 20 (15.9) | 84 (66.7) | 22 (17.5) | 126 |