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Erschienen in: Archives of Virology 10/2016

13.07.2016 | Brief Report

Great genetic diversity of rotaviruses detected in piglets with diarrhea in Thailand

verfasst von: Arpaporn Yodmeeklin, Pattara Khamrin, Watchaporn Chuchaona, Wilaiporn Saikruang, Aphisek Kongkaew, Ratchaya Vachirachewin, Kattareeya Kumthip, Shoko Okitsu, Hiroshi Ushijima, Niwat Maneekarn

Erschienen in: Archives of Virology | Ausgabe 10/2016

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Abstract

A total of 491 fecal specimens collected from diarrheic piglets in Thailand from January 2011 to March 2014 were screened for group A rotavirus by RT-PCR assay. The G and P genotypes of the detected rotaviruses were determined by multiplex PCR or nucleotide sequencing. Group A rotaviruses were detected in 113 out of 491 (23.0 %) fecal specimens. A wide variety of G-P genotype combinations were identified, and G4P[13] was the most prevalent genotype combination (29.2 %), followed by G4P[23] (14.1 %), G5P[23] (11.5 %), G4P[6] (9.7 %), G3P[23] (7.0 %), G5P[13] (6.1 %), G3P[13] (4.4 %), G3P[6] (2.7 %), and G5P[6] (2.7 %). In addition, the other G-P combinations were also detected at a low percentage, including G3P[19], G4P[7], G9P[19], G9P[23], G9P[7], G4P[19], and G11P[13] strains. This study indicated that group A rotaviruses are a common causes of diarrhea in piglets and a great diversity of G and P genotype combinations are circulating in piglets in Thailand.
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Metadaten
Titel
Great genetic diversity of rotaviruses detected in piglets with diarrhea in Thailand
verfasst von
Arpaporn Yodmeeklin
Pattara Khamrin
Watchaporn Chuchaona
Wilaiporn Saikruang
Aphisek Kongkaew
Ratchaya Vachirachewin
Kattareeya Kumthip
Shoko Okitsu
Hiroshi Ushijima
Niwat Maneekarn
Publikationsdatum
13.07.2016
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 10/2016
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-016-2976-7

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