Ausgabe 1/2016
Inhalt (67 Artikel)
Helicobacter pylori strains harboring babA2 from Indian sub population are associated with increased virulence in ex vivo study
- Open Access
- Research
Prachetash Ghosh, Avijit Sarkar, Mou Ganguly, Raghwan, Jawed Alam, Ronita De, Asish K. Mukhopadhyay
Increased dosage of infliximab is a potential cause of Pneumocystis carinii pneumonia
- Open Access
- Case report
Takuya Iwama, Aki Sakatani, Mikihiro Fujiya, Kazuyuki Tanaka, Shugo Fujibayashi, Yoshiki Nomura, Nobuhiro Ueno, Shin Kashima, Takuma Gotoh, Junpei Sasajima, Kentaro Moriichi, Katsuya Ikuta
Whole genome sequencing of “Faecalibaculum rodentium” ALO17, isolated from C57BL/6J laboratory mouse feces
- Open Access
- Genome Report
Sooyeon Lim, Dong-Ho Chang, Sharon Ahn, Byoung-Chan Kim
Surface antigens contribute differently to the pathophysiological features in serotype K1 and K2 Klebsiella pneumoniae strains isolated from liver abscesses
- Open Access
- Research
Kuo-Ming Yeh, Sheng-Kung Chiu, Chii-Lan Lin, Li-Yueh Huang, Yu-Kuo Tsai, Jen-Chang Chang, Jung-Chung Lin, Feng-Yee Chang, Leung-Kei Siu
Genomic characterization and assessment of the virulence and antibiotic resistance of the novel species Paenibacillus sp. strain VT-400, a potentially pathogenic bacterium in the oral cavity of patients with hematological malignancies
- Open Access
- Research
George Tetz, Victor Tetz, Maria Vecherkovskaya
Genome sequence of Escherichia coli NCCP15653, a group D strain isolated from a diarrhea patient
- Open Access
- Genome Report
Min-Jung Kwak, Myung-Soo Kim, Soon-Kyeong Kwon, Seung-Hak Cho, Jihyun F. Kim
Systematic review of time trends in the prevalence of Helicobacter pylori infection in China and the USA
- Open Access
- Review
Peter Nagy, Saga Johansson, Michael Molloy-Bland
The isolation and molecular characterization of Mycobacterium avium subsp. paratuberculosis in Shandong province, China
- Open Access
- Research
Ruichao Yue, Chunfa Liu, Paul Barrow, Fei Liu, Yongyong Cui, Lifeng Yang, Deming Zhao, Xiangmei Zhou
Helicobacter pylori plasticity region genes are associated with the gastroduodenal diseases manifestation in India
- Open Access
- Research
Mou Ganguly, Sagartirtha Sarkar, Prachetash Ghosh, Avijit Sarkar, Jawed Alam, Bipul Chandra Karmakar, Ronita De, Dhira Rani Saha, Asish K. Mukhopadhyay
Complete genome sequence of Peptoclostridium difficile strain Z31
- Open Access
- Genome report
Felipe L. Pereira, Carlos A. Oliveira Júnior, Rodrigo O. S. Silva, Fernanda A. Dorella, Alex F. Carvalho, Gabriel M. F. Almeida, Carlos A. G. Leal, Francisco C. F. Lobato, Henrique C. P. Figueiredo
Oxidative stress due to Mycobacterium avium subspecies paratuberculosis (MAP) infection upregulates selenium-dependent GPx activity
- Open Access
- Research
Ahmad Qasem, Ahmad Abdel-Aty, Huda Abu-Suwa, Saleh A. Naser
Draft genome sequence of non-shiga toxin-producing Escherichia coli O157 NCCP15738
- Open Access
- Genome report
Taesoo Kwon, Jung-Beom Kim, Young-Seok Bak, Young-Bin Yu, Ki Sung Kwon, Won Kim, Seung-Hak Cho
Genotyping of Salmonella Typhi using 8-loci multi locus VNTR analysis
- Open Access
- Research
Hongxia Wang, Baowei Diao, Zhigang Cui, Meiying Yan, Biao Kan
Host, pathogen and the environment: the case of Macrobrachium rosenbergii, Vibrio parahaemolyticus and magnesium
- Open Access
- Review
Suma Tiruvayipati, Subha Bhassu
The Salmonella pathogenicity island 13 contributes to pathogenesis in streptomycin pre-treated mice but not in day-old chickens
- Open Access
- Research
Jacob R. Elder, Kim Lam Chiok, Narayan C. Paul, Gary Haldorson, Jean Guard, Devendra H. Shah
Global investigation of composition and interaction networks in gut microbiomes of individuals belonging to diverse geographies and age-groups
- Open Access
- Research
Deepak Yadav, Tarini Shankar Ghosh, Sharmila S. Mande
Examination of the effects of Campylobacter concisus zonula occludens toxin on intestinal epithelial cells and macrophages
- Open Access
- Research
Vikneswari Mahendran, Fang Liu, Stephen M. Riordan, Michael C. Grimm, Mark M. Tanaka, Li Zhang
Genotyping and antibiotic resistance of thermophilic Campylobacter isolated from chicken and pig meat in Vietnam
- Open Access
- Research
Tuan Ngoc Minh Nguyen, Helmut Hotzel, Hosny El-Adawy, Hanh Thi Tran, Minh Thi Hong Le, Herbert Tomaso, Heinrich Neubauer, Hafez Mohamed Hafez
The efficacy of thuricin CD, tigecycline, vancomycin, teicoplanin, rifampicin and nitazoxanide, independently and in paired combinations against Clostridium difficile biofilms and planktonic cells
- Open Access
- Short report
Harsh Mathur, Mary C. Rea, Paul D. Cotter, Colin Hill, R. Paul Ross
The IL-23/IL-22/IL-18 axis in murine Campylobacter jejuni infection
- Open Access
- Research
Markus M. Heimesaat, Ursula Grundmann, Marie E. Alutis, André Fischer, Ulf B. Göbel, Stefan Bereswill
Complete genome sequence of Vibrio vulnificus FORC_017 isolated from a patient with a hemorrhagic rash after consuming raw dotted gizzard shad
- Open Access
- Genome report
Han Young Chung, You-Tae Kim, Suyeon Kim, Eun Jung Na, Hye-Jin Ku, Keun Hwa Lee, Sang Taek Heo, Sangryeol Ryu, Heebal Kim, Sang Ho Choi, Ju-Hoon Lee
Host, pathogen and environment: a bacterial gbpA gene expression study in response to magnesium environment and presence of prawn carapace and commercial chitin
- Open Access
- Research
Suma Tiruvayipati, Subha Bhassu
Inherent bacterial DNA contamination of extraction and sequencing reagents may affect interpretation of microbiota in low bacterial biomass samples
- Open Access
- Research
Angela Glassing, Scot E. Dowd, Susan Galandiuk, Brian Davis, Rodrick J. Chiodini
Analysis of cultivable microbiota and diet intake pattern of the long-lived naked mole-rat
- Open Access
- Research
Tewodros Debebe, Susanne Holtze, Michaela Morhart, Thomas Bernd Hildebrandt, Steffen Rodewald, Klaus Huse, Matthias Platzer, Dereje Wyohannes, Salomon Yirga, Alemayehu Lemma, Rene Thieme, Brigitte König, Gerd Birkenmeier
Serotype epidemiology and multidrug resistance patterns of Salmonella enterica infecting humans in Italy
- Open Access
- Research
Ilaria Frasson, Sabrina Bettanello, Ettore De Canale, Sara N. Richter, Giorgio Palù
Optimized cultivation of Campylobacter concisus from gut mucosal biopsies in inflammatory bowel disease
- Open Access
- Research
Karina Frahm Kirk, Hans Linde Nielsen, Ole Thorlacius-Ussing, Henrik Nielsen
Prevalence, genotyping and risk factors of thermophilic Campylobacter spreading in organic turkey farms in Germany
- Open Access
- Research
Marwa Fawzy El Metwaly Ahmed, Hosny El-Adawy, Helmut Hotzel, Herbert Tomaso, Heinrich Neubauer, Nicole Kemper, Joerg Hartung, Hafez Mohamed Hafez
Calcium binding protects E-cadherin from cleavage by Helicobacter pylori HtrA
- Open Access
- Research
Thomas P. Schmidt, Camilla Goetz, Markus Huemer, Gisbert Schneider, Silja Wessler
Duck gut viral metagenome analysis captures snapshot of viral diversity
- Open Access
- Research
Mohammed Fawaz, Periyasamy Vijayakumar, Anamika Mishra, Pradeep N. Gandhale, Rupam Dutta, Nitin M. Kamble, Shashi B. Sudhakar, Parimal Roychoudhary, Himanshu Kumar, Diwakar D. Kulkarni, Ashwin Ashok Raut
Prevalence and antibiotic resistance of bacterial pathogens isolated from childhood diarrhea in Beijing, China (2010–2014)
- Open Access
- Research
Mei Qu, Bing Lv, Xin Zhang, Hanqiu Yan, Ying Huang, Haikun Qian, Bo Pang, Lei Jia, Biao Kan, Quanyi Wang
RHB-104 triple antibiotics combination in culture is bactericidal and should be effective for treatment of Crohn’s disease associated with Mycobacterium paratuberculosis
- Open Access
- Research
Karel P. Alcedo, Saisathya Thanigachalam, Saleh A. Naser
Bacteriophage infections of microbiota can lead to leaky gut in an experimental rodent model
- Open Access
- Letter to the Editor
George Tetz, Victor Tetz
Comparative genomic analysis of Klebsiella pneumoniae subsp. pneumoniae KP617 and PittNDM01, NUHL24835, and ATCC BAA-2146 reveals unique evolutionary history of this strain
- Open Access
- Genome Report
Taesoo Kwon, Young-Hee Jung, Sanghyun Lee, Mi-ran Yun, Won Kim, Dae-Won Kim
Erratum to: The Salmonella pathogenicity island 13 contributes to pathogenesis in streptomycin pre-treated mice but not in day-old chickens
- Open Access
- Erratum
Jacob R. Elder, Kim Lam Chiok, Narayan C. Paul, Gary Haldorson, Jean Guard, Devendra H. Shah
Dysfunctional gut microbiota and relative co-abundance network in infantile eczema
- Open Access
- Research
Heping Wang, Yinhu Li, Xin Feng, Yufeng Li, Wenjian Wang, Chuangzhao Qiu, Jianqiang Xu, Zhenyu Yang, Zhichuan Li, Qian Zhou, Kaihu Yao, Hongmei Wang, Yuzheng Li, Dongfang Li, Wenkui Dai, Yuejie Zheng
Genome sequence of OXA-23 producing Acinetobacter baumannii IHIT7853, a carbapenem-resistant strain from a cat belonging to international clone IC1
- Open Access
- Genome Report
Christa Ewers, Peter Klotz, Sandra Scheufen, Ursula Leidner, Stephan Göttig, Torsten Semmler
Erratum to: Genome sequencing, annotation and comparative genomic analysis of Shigella dysenteriae strain SD1D
- Open Access
- Erratum
Gurwinder Kaur, Sathyaseelan Sathyabama, Amit Arora, Sheenam Verma, Nida Mubin, Javed N. Agrewala, Shanmugam Mayilraj
Antimicrobial resistance of Campylobacter isolates from small scale and backyard chicken in Kenya
- Open Access
- Research
Tuan Ngoc Minh Nguyen, Helmut Hotzel, John Njeru, Joyce Mwituria, Hosny El-Adawy, Herbert Tomaso, Heinrich Neubauer, Hafez M. Hafez
Antimicrobial resistance and integron gene cassette arrays in commensal Escherichia coli from human and animal sources in IRI
- Open Access
- Research
Roohollah Kheiri, Leili Akhtari
Does antibiotic resistance impair plasma susceptibility of multi-drug resistant clinical isolates of enterococci in vitro?
- Open Access
- Research
Matthias Napp, Sebastian von Podewils, Ingo Klare, Hermann Haase, Richard Kasch, Denis Gümbel, Axel Ekkernkamp, Michael Jünger, Georg Daeschlein
Gut microbiome alterations in patients with stage 4 hepatitis C
- Open Access
- Research
AbdelRahman Mahmoud Aly, AbdelReheem Adel, Ahmed Osama El-Gendy, Tamer M. Essam, Ramy K. Aziz
Zonula occludens toxins and their prophages in Campylobacter species
- Open Access
- Research
Fang Liu, Hoyul Lee, Ruiting Lan, Li Zhang
Multilocus sequence typing of Campylobacter concisus from Danish diarrheic patients
- Open Access
- Short report
Hans Linde Nielsen, Henrik Nielsen, Mia Torpdahl
A single capsule formulation of RHB-104 demonstrates higher anti-microbial growth potency for effective treatment of Crohn’s disease associated with Mycobacterium avium subspecies paratuberculosis
- Open Access
- Letter to the Editor
Ahmad Qasem, Mitra Safavikhasraghi, Saleh A. Naser
The emergence of Klebsiella pneumoniae liver abscess in non-diabetic patients and the distribution of capsular types
- Open Access
- Research
Chien Chuang, Wen-Chien Fan, Yi-Tsung Lin, Fu-Der Wang
Whole genome sequencing uncovers a novel IND-16 metallo-β-lactamase from an extensively drug-resistant Chryseobacterium indologenes strain J31
- Open Access
- Genome Report
Tingting Wang, Xiawei Jiang, Chunyan Feng, Ang Li, Huihui Dong, Shaoqiang Wu, Beiwen Zheng
Molecular epidemiology, virulence determinants and antimicrobial resistance of Campylobacter spreading in retail chicken meat in Central China
- Open Access
- Research
Tengfei Zhang, Qingping Luo, Yiluo Chen, Tingting Li, Guoyuan Wen, Rongrong Zhang, Ling Luo, Qin Lu, Diyun Ai, Hongcai Wang, Huabin Shao
The novel norovirus genotype GII.17 is the predominant strain in diarrheal patients in Shanghai, China
- Open Access
- Letter to the Editor
Lifeng Pan, Caoyi Xue, Huiqin Fu, Dan Liu, Linying Zhu, Chang Cui, Weiping Zhu, Yifei Fu, Sun Qiao
Use of molecular typing to investigate bacterial translocation from the intestinal tract of chlorpyrifos-exposed rats
- Open Access
- Research
Claire Joly Condette, Bertin Elion Dzon, Farida Hamdad, Maurice Biendo, Véronique Bach, Hafida Khorsi-Cauet
Modeling human enteric dysbiosis and rotavirus immunity in gnotobiotic pigs
- Open Access
- Research
Erica L. Twitchell, Christine Tin, Ke Wen, Husen Zhang, Sylvia Becker-Dreps, M. Andrea Azcarate-Peril, Samuel Vilchez, Guohua Li, Ashwin Ramesh, Mariah Weiss, Shaohua Lei, Tammy Bui, Xingdong Yang, Stacey Schultz-Cherry, Lijuan Yuan
Genome analysis revealed novel genotypes and recombination of the human parechoviruses prevalent in children in Eastern China
- Open Access
- Short report
Xiangyang Zhao, Yongqiang Shi, Yu Xia
Viral metagenomics of fecal samples from non-human primates revealed human astrovirus in a chimpanzee, China
- Open Access
- Short report
Xiaochun Wang, Jinxin Wang, Chenglin Zhou, Shixing Yang, Quan Shen, Wen Zhang, Dunwu Qi
Differences in amino acid frequency in CagA and VacA sequences of Helicobacter pylori distinguish gastric cancer from gastric MALT lymphoma
- Open Access
- Research
Masahiko Hashinaga, Rumiko Suzuki, Junko Akada, Takashi Matsumoto, Yasutoshi Kido, Tadayoshi Okimoto, Masaaki Kodama, Kazunari Murakami, Yoshio Yamaoka
Genome sequencing, assembly, annotation and analysis of Staphylococcus xylosus strain DMB3-Bh1 reveals genes responsible for pathogenicity
- Open Access
- Genome Report
Gurwinder Kaur, Amit Arora, Sathyaseelan Sathyabama, Nida Mubin, Sheenam Verma, Shanmugam Mayilraj, Javed N. Agrewala
Differences in host breed and diet influence colonization by Campylobacter jejuni and induction of local immune responses in chicken
- Open Access
- Research
Zifeng Han, Thomas Willer, Colin Pielsticker, Lenka Gerzova, Ivan Rychlik, Silke Rautenschlein
Whole-genome sequencing and comparative genomic analysis of Escherichia coli O91 strains isolated from symptomatic and asymptomatic human carriers
- Open Access
- Genome Report
Taesoo Kwon, Young-Seok Bak, Young-Hee Jung, Young-Bin Yu, Jong Tae Choi, Cheorl-Ho Kim, Jung-Beom Kim, Won Kim, Seung-Hak Cho
Case–control study of diarrheal disease etiology in individuals over 5 years in southwest China
- Open Access
- Research
Shun-Xian Zhang, Chun-Li Yang, Wen-Peng Gu, Lin Ai, Emmanuel Serrano, Pin Yang, Xia Zhou, Shi-Zhu Li, Shan Lv, Zhi-Sheng Dang, Jun-Hu Chen, Wei Hu, Li-Guang Tian, Jia-Xu Chen, Xiao-Nong Zhou
Complete genome of Vibrio parahaemolyticus FORC014 isolated from the toothfish
- Open Access
- Genome Report
Sojin Ahn, Han Young Chung, Sooyeon Lim, Kwondo Kim, Suyeon Kim, Eun Jung Na, Kelsey Caetano-Anolles, Ju-Hoon Lee, Sangryeol Ryu, Sang Ho Choi, Heebal Kim
Effect of antibiotic pre-treatment and pathogen challenge on the intestinal microbiota in mice
- Open Access
- Research
Tadasu Iizumi, Takako Taniguchi, Wataru Yamazaki, Geraldine Vilmen, Alexander V. Alekseyenko, Zhan Gao, Guillermo I. Perez Perez, Martin J. Blaser
Interferon-γ promotes gastric lymphoid follicle formation but not gastritis in Helicobacter-infected BALB/c mice
- Open Access
- Research
Michelle Chonwerawong, Patrick Avé, Michel Huerre, Richard L. Ferrero
Genome sequence of a commensal bacterium, Enterococcus faecalis CBA7120, isolated from a Korean fecal sample
- Open Access
- Genome Report
Joon Yong Kim, Hye Seon Song, Yeon Bee Kim, Joseph Kwon, Jong-Soon Choi, Yong-Joon Cho, Byung-Yong Kim, Jin-Kyu Rhee, Jinjong Myoung, Young-Do Nam, Seong Woon Roh
Clostridium difficile colonization and antibiotics response in PolyFermS continuous model mimicking elderly intestinal fermentation
- Open Access
- Research
Sophie Fehlbaum, Christophe Chassard, Sophie Annick Poeker, Muriel Derrien, Candice Fourmestraux, Christophe Lacroix
Alterations of the gut microbiome in Chinese patients with systemic lupus erythematosus
- Open Access
- Research
Zhixing He, Tiejuan Shao, Haichang Li, Zhijun Xie, Chengping Wen
Comparative genomics analyses revealed two virulent Listeria monocytogenes strains isolated from ready-to-eat food
- Open Access
- Genome Report
Shu Yong Lim, Kien-Pong Yap, Kwai Lin Thong
Effects of Escherichia coli Nissle 1917 and Ciprofloxacin on small intestinal epithelial cell mRNA expression in the neonatal piglet model of human rotavirus infection
- Open Access
- Short report
Francine C. Paim, Stephanie N. Langel, David D. Fischer, Sukumar Kandasamy, Lulu Shao, Moyasar A. Alhamo, Huang-Chi Huang, Anand Kumar, Gireesh Rajashekara, Linda J. Saif, Anastasia N. Vlasova
Impacts of resistant starch and wheat bran consumption on enteric inflammation in relation to colonic bacterial community structures and short-chain fatty acid concentrations in mice
- Open Access
- Research
Janelle A. Jiminez, Trina C. Uwiera, D. Wade Abbott, Richard R. E. Uwiera, G. Douglas Inglis
