Ausgabe 1/2019
Inhalt (59 Artikel)
Alteration in gut microbiota associated with hepatitis B and non-hepatitis virus related hepatocellular carcinoma
- Open Access
- Research
Qisha Liu, Fan Li, Yaoyao Zhuang, Jian Xu, Jianwei Wang, Xuhua Mao, Yewei Zhang, Xingyin Liu
Prevalence and molecular determinants of colistin resistance among commensal Enterobacteriaceae isolated from poultry in northwest of Iran
- Open Access
- Research
Zeinab Pishnian, Mehri Haeili, Adel Feizi
High contiguity genome sequence of a multidrug-resistant hospital isolate of Enterobacter hormaechei
- Open Access
- Genome Report
Leigh G. Monahan, Matthew Z. DeMaere, Max L. Cummins, Steven P. Djordjevic, Piklu Roy Chowdhury, Aaron E. Darling
Campylobacter jejuni enters gut epithelial cells and impairs intestinal barrier function through cleavage of occludin by serine protease HtrA
- Open Access
- Research
Aileen Harrer, Roland Bücker, Manja Boehm, Urszula Zarzecka, Nicole Tegtmeyer, Heinrich Sticht, Jörg D. Schulzke, Steffen Backert
CagL polymorphisms D58/K59 are predominant in Helicobacter pylori strains isolated from Mexican patients with chronic gastritis
- Open Access
- Research
Adolfo Román-Román, Verónica I. Martínez-Santos, Carlos A. Castañón-Sánchez, Alan J. Albañil-Muñoz, Paola González-Mendoza, Diana G. Soto-Flores, Dinorah N. Martínez-Carrillo, Gloria Fernández-Tilapa
The influence of probiotic bacteria and human gut microorganisms causing opportunistic infections on Blastocystis ST3
- Open Access
- Research
M. Lepczyńska, E. Dzika
The complete genome and methylome of Helicobacter pylori hpNEAfrica strain HP14039
- Open Access
- Genome Report
Binit Lamichhane, Eng-Guan Chua, Michael J. Wise, Connor Laming, Barry J. Marshall, Chin-Yen Tay
1,25(OH)2D3 deficiency-induced gut microbial dysbiosis degrades the colonic mucus barrier in Cyp27b1 knockout mouse model
- Open Access
- Research
Wenjing Zhu, Jiayao Yan, Chunchun Zhi, Qianwen Zhou, Xiaoqin Yuan
Comparative genomic analysis of enterotoxigenic Escherichia coli O159 strains isolated from diarrheal patients in Korea
- Open Access
- Genome Report
Si-yun Chung, Taesoo Kwon, Young-Seok Bak, Joung Je Park, Cheorl-Ho Kim, Seung-Hak Cho, Won Kim
Virulence factors, prevalence and potential transmission of extraintestinal pathogenic Escherichia coli isolated from different sources: recent reports
- Open Access
- Review
Jolanta Sarowska, Bozena Futoma-Koloch, Agnieszka Jama-Kmiecik, Magdalena Frej-Madrzak, Marta Ksiazczyk, Gabriela Bugla-Ploskonska, Irena Choroszy-Krol
Rapid identification of capsular serotype K1/K2 Klebsiella pneumoniae in pus samples from liver abscess patients and positive blood culture samples from bacteremia cases via an immunochromatographic strip assay
- Open Access
- Research
Ching-Hsun Wang, Po-Liang Lu, Esther Yip-Mei Liu, Yih-Yuan Chen, Fu-Mei Lin, Yi-Tsung Lin, Feng-Yee Chang, Jung-Chung Lin
Diagnosing and tracing the pathogens of infantile infectious diarrhea by amplicon sequencing
- Open Access
- Research
Haiyan Liu, Mingzhang Guo, Yuanchunzi Jiang, Yanhua Cao, Qingzeng Qian, Xiaoyun He, Kunlun Huang, Jianwei Zhang, Wentao Xu
NMR metabolomics reveals effects of Cryptosporidium infections on host cell metabolome
- Open Access
- Research
Christopher N. Miller, Charalampos G. Panagos, William R. T. Mosedale, Martin Kváč, Mark J. Howard, Anastasios D. Tsaousis
Quantification of serine protease HtrA molecules secreted by the foodborne pathogen Campylobacter jejuni
- Open Access
- Research
Matthias Neddermann, Steffen Backert
Two putative MmpL homologs contribute to antimicrobial resistance and nephropathy of enterohemorrhagic E. coli O157:H7
- Open Access
- Research
Salma H. Hussein, Reham Samir, Ramy K. Aziz, Mohamed A. Toama
Complete genome sequence of bile-isolated Enterococcus avium strain 352
- Open Access
- Genome Report
Tao Yu, Lixiang Li, Qilin Zhao, Peng Wang, Xiuli Zuo
Pancreatic disease patients are at higher risk for Clostridium difficile infection compared to those with other co-morbidities
- Open Access
- Research
Chetana Vaishnavi, Pramod K. Gupta, Megha Sharma, Rakesh Kochhar
Gut microbiome associated with chemotherapy-induced diarrhea from the CapeOX regimen as adjuvant chemotherapy in resected stage III colorectal cancer
- Open Access
- Research
Zuo Fei, Yin Lijuan, Yang Xi, Wu Wei, Zhong Jing, Da Miao, Han Shuwen
Determination of azithromycin heteroresistant Campylobacter jejuni in traveler’s diarrhea
- Open Access
- Letter to the Editor
Woradee Lurchachaiwong, Supaporn Ruksasiri, Patcharawalai Wassanarungroj, Oralak Serichantalergs, Ladaporn Bodhidatta, John Crawford, Sanjaya Kumar Shrestha, Prativa Pandey
Compositional and functional differences in human gut microbiome with respect to equol production and its association with blood lipid level: a cross-sectional study
- Open Access
- Research
Wei Zheng, Yue Ma, Ai Zhao, Tingchao He, Na Lyu, Ziqi Pan, Geqi Mao, Yan Liu, Jing Li, Peiyu Wang, Jun Wang, Baoli Zhu, Yumei Zhang
High primary resistance to metronidazole and levofloxacin, and a moderate resistance to clarithromycin in Helicobacter pylori isolated from Karnataka patients
- Open Access
- Research
Vignesh Shetty, Binit Lamichhane, Chin Yen Tay, Ganesh C. Pai, Ramachandra Lingadakai, Girisha Balaraju, Shiran Shetty, Mamatha Ballal, Eng Guan Chua
Prevalence and pathologic effects of colibactin and cytotoxic necrotizing factor-1 (Cnf 1) in Escherichia coli: experimental and bioinformatics analyses
- Open Access
- Research
Radwa N. Morgan, Sarra E. Saleh, Hala A. Farrag, Mohammad M. Aboulwafa
Cytokines derived from innate lymphoid cells assist Helicobacter hepaticus to aggravate hepatocellular tumorigenesis in viral transgenic mice
- Open Access
- Research
Xiao Han, Tianren Huang, Junqing Han
Immunopathological properties of the Campylobacter jejuni flagellins and the adhesin CadF as assessed in a clinical murine infection model
- Open Access
- Research
Anna-Maria Schmidt, Ulrike Escher, Soraya Mousavi, Nicole Tegtmeyer, Manja Boehm, Steffen Backert, Stefan Bereswill, Markus M. Heimesaat
Genomic characterization of Escherichia coli LCT-EC001, an extremely multidrug-resistant strain with an amazing number of resistance genes
- Open Access
- Genome Report
Xuelin Zhang, Saisong Xiao, Xuege Jiang, Yun Li, Zhongyi Fan, Yi Yu, Peng Wang, Diangeng Li, Xian Zhao, Changting Liu
Variation of human norovirus GII genotypes detected in Ibaraki, Japan, during 2012–2018
- Open Access
- Research
Takumi Motoya, Masahiro Umezawa, Aoi Saito, Keiko Goto, Ikuko Doi, Setsuko Fukaya, Noriko Nagata, Yoshiaki Ikeda, Kaori Okayama, Jumpei Aso, Yuki Matsushima, Taisei Ishioka, Akihide Ryo, Nobuya Sasaki, Kazuhiko Katayama, Hirokazu Kimura
High frequency of toxigenic Clostridium difficile and Clostridium perfringens coinfection among diarrheic patients at health care facility-onset (HCFO) and community-onset (CO) centers in Bogotá, Colombia
- Open Access
- Short report
Alex J. Forero, Marina Muñoz, Milena Camargo, Sara C. Soto-De León, Dora I. Ríos-Chaparro, Claudia Birchenall, Darío Pinilla, Juan M. Pardo, Diego F. Josa, Manuel A. Patarroyo, Juan D. Ramírez
Prevalence of Helicobacter pylori infection and antibiotic resistance profile in Armenia
- Open Access
- Research
Manik Gemilyan, Gagik Hakobyan, Lucie Benejat, Bujana Allushi, Davit Melik-Nubaryan, Harutyun Mangoyan, Amandine Laur, Emilie Daguerre, Eduard Grigoryan, Francis Megraud
Proton pump inhibitors and 180-day mortality in the elderly after Clostridium difficile treatment
- Open Access
- Research
Evan Stuart Bradley, Emily Howe, Xun Wu, John P. Haran
Characterization of internalin genes in Listeria monocytogenes from food and humans, and their association with the invasion of Caco-2 cells
- Open Access
- Research
Xudong Su, Guojie Cao, Jianmin Zhang, Haijian Pan, Daofeng Zhang, Dai Kuang, Xiaowei Yang, Xuebin Xu, Xianming Shi, Jianghong Meng
Differential genetic and functional background in inflammatory bowel disease phenotypes of a Greek population: a systems bioinformatics approach
- Open Access
- Research
Maria Gazouli, Nikolas Dovrolis, Andre Franke, George M. Spyrou, Leonardo A. Sechi, George Kolios
Whole-genome comparative analysis of Campylobacter jejuni strains isolated from patients with diarrhea in northeastern Poland
- Open Access
- Research
Krzysztof Fiedoruk, Tamara Daniluk, Dorota Rozkiewicz, Elzbieta Oldak, Suhanya Prasad, Izabela Swiecicka
Whole exome sequencing of patients who resolved Crohn’s disease and complex regional pain syndrome following treatment for paratuberculosis
- Open Access
- Research
J. Todd Kuenstner, Maher Kali, Christine Welch
Validating the inhibitory effects of d- and l-serine on the enzyme activity of d-3-phosphoglycerate dehydrogenases that are purified from Pseudomonas aeruginosa, Escherichia coli and human colon
- Open Access
- Research
Jun Okuda, Syouya Nagata, Masashi Yasuda, Chigusa Suezawa
Recombinant fusion protein of Heparin-Binding Hemagglutinin Adhesin and Fibronectin Attachment Protein (rHBHA-FAP) of Mycobacterium avium subsp. paratuberculosis elicits a strong gamma interferon response in peripheral blood mononuclear cell culture
- Open Access
- Research
Vida Eraghi, Abdollah Derakhshandeh, Arsalan Hosseini, Masoud Haghkhah, Leonardo A. Sechi, Azar Motamedi Boroojeni
Whole-genome analysis of rotavirus G4P[6] strains isolated from Korean neonates: association of Korean neonates and rotavirus P[6] genotypes
- Open Access
- Research
Su-Kyung Lee, Seoheui Choi, Jae-Seok Kim, Eun Jin Lee, Jungwon Hyun, Hyun Soo Kim
Nonhemolysis of epidemic El Tor biotype strains of Vibrio cholerae is related to multiple functional deficiencies of hemolysin A
- Open Access
- Research
Yufeng Fan, Zhenpeng Li, Zhe Li, Xu Li, Huihui Sun, Jie Li, Xin Lu, Weili Liang, Biao Kan
Differential transcriptome analysis of the disease tolerant Madagascar–Malaysia crossbred black tiger shrimp, Penaeus monodon hepatopancreas in response to acute hepatopancreatic necrosis disease (AHPND) infection: inference on immune gene response and interaction
- Open Access
- Research
Tze Chiew Christie Soo, Sridevi Devadas, Mohamed Shariff Mohamed Din, Subha Bhassu
Genotypic prevalence of norovirus GII in gastroenteritis outpatients in Shanghai from 2016 to 2018
- Open Access
- Research
Xiaozhou Kuang, Zheng Teng, Xi Zhang
Synbiotic-like effect of linoleic acid overproducing Lactobacillus casei with berry phenolic extracts against pathogenesis of enterohemorrhagic Escherichia coli
- Open Access
- Research
Zajeba Tabashsum, Mengfei Peng, Cassendra Bernhardt, Puja Patel, Michael Carrion, Debabrata Biswas
Differences in virulence gene expression between human blood and stool Campylobacter coli clade 1 ST828CC isolates
- Open Access
- Research
Cecilia Johansson, Anna Nilsson, René Kaden, Hilpi Rautelin
Preliminary feasibility for recruiting and retaining black and white females to provide fecal samples for longitudinal research
- Open Access
- Short report
Tiffany L. Carson, Rebecca B. Little, Sh’Nese Townsend
First bloodstream infection caused by Prevotella copri in a heart failure elderly patient with Prevotella-dominated gut microbiota: a case report
- Open Access
- Case report
Patrizia Posteraro, Flavio De Maio, Giulia Menchinelli, Ivana Palucci, Federica Maria Errico, Mariantonietta Carbone, Maurizio Sanguinetti, Antonio Gasbarrini, Brunella Posteraro
Genome-wide mutation analysis of Helicobacter pylori after inoculation to Mongolian gerbils
- Open Access
- Research
Rumiko Suzuki, Kazuhito Satou, Akino Shiroma, Makiko Shimoji, Kuniko Teruya, Takashi Matsumoto, Junko Akada, Takashi Hirano, Yoshio Yamaoka
Shiga toxin producing Escherichia coli-associated diarrhea and hemolytic uremic syndrome in young children in Romania
- Open Access
- Research
Oana Falup-Pecurariu, Raluca Ileana Lixandru, Emanuela Cojocaru, Katalin Csutak, Vlad Monescu, Khitam Muhsen, Cristian Falup-Pecurariu, Daniel Cohen
First complete genome sequence and comparative analysis of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) indicates host adaptation traits to sheep
- Open Access
- Genome Report
Laura Uelze, Maria Borowiak, Carlus Deneke, Cécile Jacobs, István Szabó, Simon H. Tausch, Burkhard Malorny
Is there any association between gut microbiota and type 1 diabetes? A systematic review
- Open Access
- Review
Parnian Jamshidi, Saba Hasanzadeh, Azin Tahvildari, Yeganeh Farsi, Mahta Arbabi, João Felipe Mota, Leonardo A. Sechi, Mohammad Javad Nasiri
Correction to: The pathogenic intestinal spirochaete Brachyspira pilosicoli forms a diverse recombinant species demonstrating some local clustering of related strains and potential for zoonotic spread
- Open Access
- Correction
Eugene Neo, Tom La, Nyree Dale Phillips, Mohammad Yousef Alikani, David J. Hampson
Evaluation of the Vibrant DNA microarray for the high-throughput multiplex detection of enteric pathogens in clinical samples
- Open Access
- Research
Yuanyuan Yang, Vinod Rajendran, Vasanth Jayaraman, Tianhao Wang, Kang Bei, Karthik Krishna, Karenah Rajasekaran, John J. Rajasekaran, Hari Krishnamurthy
Occurrence of Escherichia coli and faecal coliforms in drinking water at source and household point-of-use in Rohingya camps, Bangladesh
- Open Access
- Research
Zahid Hayat Mahmud, Md Shafiqul Islam, Khan Mohammad Imran, Syed Adnan Ibna Hakim, Martin Worth, Alvee Ahmed, Shanewaz Hossan, Maliha Haider, Mohammad Rafiqul Islam, Ferdous Hossain, Dara Johnston, Niyaz Ahmed
RstA, a two-component response regulator, plays important roles in multiple virulence-associated processes in enterohemorrhagic Escherichia coli O157:H7
- Open Access
- Research
Yutao Liu, Shujie Li, Wendi Li, Peisheng Wang, Peng Ding, Lingyu Li, Junyue Wang, Pan Yang, Qian Wang, Tingting Xu, Yingying Xiong, Bin Yang
Hypervirulent clade 2, ribotype 019/sequence type 67 Clostridioides difficile strain from Japan
- Open Access
- Short report
Ryoichi Saito, Yukino Usui, Alafate Ayibieke, Jun Nakajima, Isaac Prah, Kazunari Sonobe, Yoshibumi Aiso, Shiori Ito, Yasuhiro Itsui, Yoshiro Hadano, Yoko Nukui, Ryuji Koike, Shuji Tohda
Complete genome analysis of clinical Shigella strains reveals plasmid pSS1653 with resistance determinants: a triumph of hybrid approach
- Open Access
- Genome Report
Dhiviya Prabaa Muthuirulandi Sethuvel, Balaji Veeraraghavan, Karthick Vasudevan, Naveen Kumar Devanga Ragupathi, Dhivya Murugan, Kamini Walia, Shalini Anandan
Investigation of molecular mechanisms underlying tetracycline resistance in thermophilic Campylobacter spp. suggests that previous reports of tet(A)-mediated resistance in these bacteria are premature
- Open Access
- Letter to the Editor
Caoimhe Lynch, Kayleigh Hawkins, Helen Lynch, John Egan, Declan Bolton, Aidan Coffey, Brigid Lucey
Correction to: Involvement of gut microbiome in human health and disease: brief overview, knowledge gaps and research opportunities
- Open Access
- Correction
Dachao Liang, Ross Ka‑Kit Leung, Wenda Guan, William W. Au
The intestinal microbial community dissimilarity in hepatitis B virus-related liver cirrhosis patients with and without at alcohol consumption
- Open Access
- Research
Yong-Dong Deng, Xue-Bin Peng, Rong-Rong Zhao, Chao-Qun Ma, Jian-ning Li, Li-Qiong Yao
Comparison of different technologies for the decipherment of the whole genome sequence of Campylobacter jejuni BfR-CA-14430
- Open Access
- Research
Lennard Epping, Julia C. Golz, Marie-Theres Knüver, Charlotte Huber, Andrea Thürmer, Lothar H. Wieler, Kerstin Stingl, Torsten Semmler
