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Zeitschrift

Gut Pathogens

Gut Pathogens 1/2021

Ausgabe 1/2021

Inhaltsverzeichnis ( 63 Artikel )

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Bacteroides, butyric acid and t10,c12-CLA changes in colorectal adenomatous polyp patients

Ciyan Chen, Min Niu, Junxi Pan, Na Du, Shumin Liu, Huanqin Li, Qiuyue He, Jian Mao, Yong Duan, Yan Du

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Eubacterium rectale contributes to colorectal cancer initiation via promoting colitis

Yijia Wang, Xuehua Wan, Xiaojing Wu, Chunze Zhang, Jun Liu, Shaobin Hou

01.12.2021 | Short report | Ausgabe 1/2021 Open Access

High genetic diversity in Campylobacter concisus isolates from patients with microscopic colitis

Marta Emilie Yde Aagaard, Karina Frahm Kirk, Henrik Nielsen, Hans Linde Nielsen

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Evaluation of CAMPYLOBACTER QUIK CHEK™ rapid membrane enzyme immunoassay to detect Campylobacter spp. antigen in stool samples

Justine Franco, Lucie Bénejat, Astrid Ducournau, Francis Mégraud, Philippe Lehours, Emilie Bessède

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Adherent invasive Escherichia coli (AIEC) strain LF82, but not Candida albicans, plays a profibrogenic role in the intestine

Dina Chokr, Marjorie Cornu, Christel Neut, Clovis Bortolus, Rogatien Charlet, Pierre Desreumaux, Silvia Speca, Boualem Sendid

01.12.2021 | Genome Report | Ausgabe 1/2021 Open Access

The genomic characterisation and comparison of Bacillus cereus strains isolated from indoor air

Balakrishnan N. V. Premkrishnan, Cassie E. Heinle, Akira Uchida, Rikky W. Purbojati, Kavita K. Kushwaha, Alexander Putra, Puramadathil Sasi Santhi, Benjamin W. Y. Khoo, Anthony Wong, Vineeth Kodengil Vettath, Daniela I. Drautz-Moses, Ana Carolina M. Junqueira, Stephan C. Schuster

01.12.2021 | COVID-19 | Research | Ausgabe 1/2021 Open Access

Detection of SARS-CoV-2 from patient fecal samples by whole genome sequencing

Andreas Papoutsis, Thomas Borody, Siba Dolai, Jordan Daniels, Skylar Steinberg, Brad Barrows, Sabine Hazan

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Prevalence, antimicrobial resistance, and genotyping of Shiga toxin-producing Escherichia coli in foods of cattle origin, diarrheic cattle, and diarrheic humans in Egypt

Walid Elmonir, Samar Shalaan, Amin Tahoun, Samy F. Mahmoud, Etab M. Abo Remela, Radwa Eissa, Hanem El-Sharkawy, Mustafa Shukry, Rasha N. Zahran

01.12.2021 | Genome Report | Ausgabe 1/2021 Open Access

Comparative genomics of two Shewanella xiamenensis strains isolated from a pilgrim before and during travels to the Hajj

Thongpan Leangapichart, Linda Hadjadj, Philippe Gautret, Jean-Marc Rolain

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Characteristics of patients infected with Clostridioides difficile at a Saudi Tertiary Academic Medical Center and assessment of antibiotic duration

Khadijah M. Alammari, Abrar K. Thabit

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Gut microbiota of patients with different subtypes of gastric cancer and gastrointestinal stromal tumors

Virinder Sarhadi, Binu Mathew, Arto Kokkola, Tiina Karla, Milja Tikkanen, Hilpi Rautelin, Leo Lahti, Pauli Puolakkainen, Sakari Knuutila

01.12.2021 | Letter to the Editor | Ausgabe 1/2021 Open Access

Are hospitalized patients with inflammatory bowel disease at increased risk of invasive bacterial infections? Results from POLIBD 3-year cohort study

Jolanta Gruszecka, Rafał Filip

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Ectopic gut colonization: a metagenomic study of the oral and gut microbiome in Crohn’s disease

Shijia Hu, Eileen Png, Michelle Gowans, David E. H. Ong, Paola Florez de Sessions, Jie Song, Niranjan Nagarajan

26.02.2021 | COVID-19 | Commentary | Ausgabe 1/2021 Open Access

Interplay between severities of COVID-19 and the gut microbiome: implications of bacterial co-infections?

Jyoti Chhibber-Goel, Sreehari Gopinathan, Amit Sharma

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Transcriptional regulation of the virulence genes and the biofilm formation associated operons in Vibrio parahaemolyticus

Yiquan Zhang, Yue Qiu, Xingfan Xue, Miaomiao Zhang, Junfang Sun, Xue Li, Lingfei Hu, Zhe Yin, Wenhui Yang, Renfei Lu, Dongsheng Zhou

01.12.2021 | Research | Ausgabe 1/2021 Open Access

No distinction in the gut microbiota between diarrhea predominant-irritable bowel syndrome and healthy subjects: matched case–control study in Thailand

Sawangpong Jandee, Suppana Chuensakul, Suppasil Maneerat

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Proton pump inhibitors use and risk of developing spontaneous bacterial peritonitis in cirrhotic patients: A systematic review and meta-analysis

Saad Alhumaid, Abbas Al Mutair, Zainab Al Alawi, Abdul Rehman Zia Zaidi, Ali A. Rabaan, Alyaa Elhazmi, Awad Al-Omari

01.12.2021 | Case report | Ausgabe 1/2021 Open Access

Diarrhea in an infant due to Shigella flexneri 1 carrying multiple cephalosporinase-encoding genes

M. John Albert, Prashant Purohit, Laurent Poirel, Glen Carter, Dieter Bulach

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Mucosa‐associated cultivable aerobic gut bacterial microbiota among colorectal cancer patients attending at the referral hospitals of Amhara Regional State, Ethiopia

Yesuf Adem Siraj, Melesse Gebeyehu Biadgelign, Mensur Osman Yassin, Yohannes Zenebe Chekol

01.12.2021 | Short report | Ausgabe 1/2021 Open Access

Phylogenetic analysis of HIV-1 archived DNA in blood and gut-associated lymphoid tissue in two patients under antiretroviral therapy

Patricia Recordon-Pinson, Annie Gosselin, Petronela Ancuta, Jean-Pierre Routy, Hervé Fleury

01.12.2021 | Short Report | Ausgabe 1/2021 Open Access

Microbiome profiling of rotavirus infected children suffering from acute gastroenteritis

Muhammad U. Sohail, Hebah A. Al Khatib, Asmaa A. Al Thani, Khalid Al Ansari, Hadi M. Yassine, Maha Al-Asmakh

01.12.2021 | Review | Ausgabe 1/2021 Open Access

Potential capacity of interferon-α to eliminate covalently closed circular DNA (cccDNA) in hepatocytes infected with hepatitis B virus

Gang Wang, Jun Guan, Nazif U. Khan, Guojun Li, Junwei Shao, Qihui Zhou, Lichen Xu, Chunhong Huang, Jingwen Deng, Haihong Zhu, Zhi Chen

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Diversity of 3′ variable region of cagA gene in Helicobacter pylori strains isolated from Chinese population

Zhijing Xue, Yuanhai You, Lihua He, Yanan Gong, Lu Sun, Xiurui Han, Ruyue Fan, Kangle Zhai, Yaming Yang, Maojun Zhang, Xiaomei Yan, Jianzhong Zhang

01.12.2021 | Case report | Ausgabe 1/2021 Open Access

Cytomegalovirus‐associated esophagitis on early esophageal cancer in immunocompetent host: a case report

Daisuke Murakami, Hideaki Harada, Masayuki Yamato, Yuji Amano

01.12.2021 | Review | Ausgabe 1/2021 Open Access

Association of small intestinal bacterial overgrowth with Parkinson’s disease: a systematic review and meta-analysis

Xiaoqing Li, Xin Feng, Zhongxiang Jiang, Zheng Jiang

01.12.2021 | Case report | Ausgabe 1/2021 Open Access

Helicobacter cinaedi bacteraemia secondary to enterocolitis in an immunocompetent patient

Sofie Larsen Rasmussen, Iben Ørsted, Irene Harder Tarpgaard, Hans Linde Nielsen

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Insights about the epidemiology of Salmonella Typhimurium isolates from different sources in Brazil using comparative genomics

Amanda Ap. Seribelli, Patrick da Silva, Marcelo Ferreira da Cruz, Fernanda de Almeida, Miliane R. Frazão, Marta I. C. Medeiros, Dália dos P. Rodrigues, Jalusa D. Kich, Leandro de Jesus Benevides, Siomar de C. Soares, Marc W. Allard, Juliana Pfrimer. Falcão

01.12.2021 | Review | Ausgabe 1/2021 Open Access

Intestinal parasites among intellectually disabled individuals in Iran: a systematic review and meta-analysis

Mohammad Javad Abbaszadeh Afshar, Mehdi Mohebali, Sina Mohtasebi, Aref Teimouri, Bahareh Sedaghat, Reza Saberi

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Role of interferon gamma in SARS-CoV-2-positive patients with parasitic infections

Enas Fakhry Abdel-Hamed, Mohamed N. Ibrahim, Nahed E. Mostafa, Howayda S. F. Moawad, Nahla E. Elgammal, Ehab M. Darwiesh, Dina S. El-rafey, Nissreen E. ElBadawy, Emad Ali Al-Khoufi, Salwa I. Hindawi

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Comparison of a mycobacterial phage assay to detect viable Mycobacterium avium subspecies paratuberculosis with standard diagnostic modalities in cattle with naturally infected Johne disease

Robert J. Greenstein, Liya Su, Irene R. Grant, Antonio C. G. Foddai, Amy Turner, Jason S. Nagati, Sheldon T. Brown, Judith R. Stabel

01.12.2021 | Review | Ausgabe 1/2021 Open Access

The role of mycobiota-genotype association in inflammatory bowel diseases: a narrative review

Elaheh Mahmoudi, Sayed-Hamidreza Mozhgani, Niusha Sharifinejad

01.12.2021 | Research | Ausgabe 1/2021 Open Access

The prevalence of the iutA and ibeA genes in Escherichia coli isolates from severe and non-severe patients with bacteremic acute biliary tract infection is significantly different

Mahoko Ikeda, Tatsuya Kobayashi, Fumie Fujimoto, Yuta Okada, Yoshimi Higurashi, Keita Tatsuno, Shu Okugawa, Kyoji Moriya

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Burden and etiology of moderate and severe diarrhea in children less than 5 years of age living in north and south of China: Prospective, population-based surveillance

Hong-Lu Zhou, Theresa Bessey, Song-Mei Wang, Zhao-Jun Mo, Leslie Barclay, Jin-Xia Wang, Can-Jing Zhang, Jing-Chen Ma, Chao Qiu, Gan Zhao, Rong-Cheng Li, Yu-Liang Zhao, Baoming Jiang, Xuan-Yi Wang

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Evolution of the GII.3[P12] Norovirus from 2010 to 2019 in Jiangsu, China

Jianguang Fu, Jing Ai, Changjun Bao, Jun Zhang, Qingbin Wu, Liguo Zhu, Jianli Hu, Zheng Xing

01.12.2021 | Letter to the Editor | Ausgabe 1/2021 Open Access

Presence of plasmid-mediated quinolone resistance (PMQR) genes in non-typhoidal Salmonella strains with reduced susceptibility to fluoroquinolones isolated from human salmonellosis in Gyeonggi-do, South Korea from 2016 to 2019

Sohyun Lee, Nanjoo Park, Sujung Yun, Eunseon Hur, Jiwon Song, Hanna Lee, Yongsug Kim, Sangryeol Ryu

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Helicobacter pylori in the Indonesian Malay’s descendants might be imported from other ethnicities

Ari Fahrial Syam, Langgeng Agung Waskito, Yudith Annisa Ayu Rezkitha, Rentha Monica Simamora, Fauzi Yusuf, Kanserina Esthera Danchi, Ahmad Fuad Bakry, Arnelis, Erwin Mulya, Gontar Alamsyah Siregar, Titong Sugihartono, Hasan Maulahela, Dalla Doohan, Muhammad Miftahussurur, Yoshio Yamaoka

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Mixtures of natural antimicrobials can reduce Campylobacter jejuni, Salmonella enterica and Clostridium perfringens infections and cellular inflammatory response in MDCK cells

Igori Balta, Adela Marcu, Mark Linton, Carmel Kelly, Ozan Gundogdu, Lavinia Stef, Ioan Pet, Patrick Ward, Myriam Deshaies, Todd Callaway, Phittawat Sopharat, Gratiela Gradisteanu-Pircalabioru, Nicolae Corcionivoschi

01.12.2021 | Research | Ausgabe 1/2021 Open Access

A re-testing range is recommended for 13C- and 14C-urea breath tests for Helicobacter pylori infection in China

Xiangyu Wang, Shuzhen Zhang, Eng Guan Chua, Yongsheng He, Xiaofeng Li, Aijun Liu, Haiting Chen, Michael J. Wise, Barry J. Marshall, Dayong Sun, Xuehong Li, Chin Yen Tay

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Geographic distribution of the cagA, vacA, iceA, oipA and dupA genes of Helicobacter pylori strains isolated in China

Zhijing Xue, Hong Yang, Dongxing Su, Xiangfeng Song, Xin Deng, Changhong Yu, Chunhua Sun, Lihua He, Yuanhai You, Yanan Gong, Dongjie Fan, Lu Sun, Xiurui Han, Ruyue Fan, Maojun Zhang, Xiaomei Yan, Jiaming Qian, Jianzhong Zhang

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Virulence among different types of hypervirulent Klebsiella pneumoniae with multi-locus sequence type (MLST)-11, Serotype K1 or K2 strains

Tsui-Chin Wang, Jung-Chung Lin, Jen-Chang Chang, Ya-Wen Hiaso, Ching-Hsun Wang, Sheng‑Kung Chiu, Chang-Phone Fung, Feng-Yee Chang, L. Kristopher Siu

01.12.2021 | Genome Report | Ausgabe 1/2021 Open Access

Genomic analysis of halophilic bacterium, Lentibacillus sp. CBA3610, derived from human feces

Seung Woo Ahn, Se Hee Lee, Hong-Seok Son, Seong Woon Roh, Yoon-E Choi

01.12.2021 | Research | Ausgabe 1/2021 Open Access

The glycosyltransferase ST3GAL2 is regulated by miR-615-3p in the intestinal tract of Campylobacter jejuni infected mice

De Xi, Lukas Hofmann, Thomas Alter, Ralf Einspanier, Stefan Bereswill, Markus M. Heimesaat, Greta Gölz, Soroush Sharbati

01.12.2021 | Research | Ausgabe 1/2021 Open Access

The penicillin binding protein 1A of Helicobacter pylori, its amoxicillin binding site and access routes

Bahareh Attaran, Najmeh Salehi, Bahareh Ghadiri, Maryam Esmaeili, Shadi Kalateh, Mohammad Tashakoripour, Mahmoud Eshagh Hosseini, Marjan Mohammadi

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Deepoxy-deoxynivalenol (DOM-1), a derivate of deoxynivalenol (DON), exhibits less toxicity on intestinal barrier function, Campylobacter jejuni colonization and translocation in broiler chickens

Daniel Ruhnau, Claudia Hess, Barbara Doupovec, Bertrand Grenier, Dian Schatzmayr, Michael Hess, Wageha Awad

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Antibiotic resistance and detection of plasmid mediated colistin resistance mcr-1 gene among Escherichia coli and Klebsiella pneumoniae isolated from clinical samples

Deepa Karki, Binod Dhungel, Srijana Bhandari, Anil Kunwar, Prabhu Raj Joshi, Basudha Shrestha, Komal Raj Rijal, Prakash Ghimire, Megha Raj Banjara

01.12.2021 | Research | Ausgabe 1/2021 Open Access

In silico molecular docking and in vitro antimicrobial efficacy of phytochemicals against multi-drug-resistant enteroaggregative Escherichia coli and non-typhoidal Salmonella spp.

Padikkamannil Abishad, Pollumahanti Niveditha, Varsha Unni, Jess Vergis, Nitin Vasantrao Kurkure, Sandeep Chaudhari, Deepak Bhiwa Rawool, Sukhadeo Baliram Barbuddhe

01.12.2021 | Research | Ausgabe 1/2021 Open Access

One health pathogen surveillance demonstrated the dissemination of gut pathogens within the two coastal regions associated with intensive farming

Qingyao Wang, Yixiang Zhang, Qian Yang, Songzhe Fu, Baocheng Qu, Tom Defoirdt

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Bioengineering of LAB vector expressing Haemolysin co-regulated protein (Hcp): a strategic approach to control gut colonization of Campylobacter jejuni in a murine model

Chandan Gorain, Afruja Khan, Ankita Singh, Samiran Mondal, Amirul Islam Mallick

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Effect of intestinal microecology on postnatal weight gain in very preterm infants in intensive care units

Ying-Xue Ding, Shou-Ni Wang, Hong Cui, Li-Na Jiang

01.12.2021 | Review | Ausgabe 1/2021 Open Access

Gut microbiota influence in type 2 diabetes mellitus (T2DM)

A. L. Cunningham, J. W. Stephens, D. A. Harris

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Microbiome diversity declines while distinct expansions of Th17, iNKT, and dendritic cell subpopulations emerge after anastomosis surgery

Emilie E. Vomhof-DeKrey, Allie Stover, Marc D. Basson

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Dock2 affects the host susceptibility to Citrobacter rodentium infection through regulating gut microbiota

Yuan Xie, Jun Chen, Bing Wu, Tiansheng He, Lu Xie, Zhiping Liu

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Clinical manifestations, risk factors, and prognostic factors of cytomegalovirus enteritis

Pai-Jui Yeh, Cheng-Tang Chiu, Ming-Wei Lai, Ren-Chin Wu, Chien-Ming Chen, Chia-Jung Kuo, Jun-Te Hsu, Ming-Yao Su, Wei-Pin Lin, Tsung-Hsing Chen, Puo-Hsien Le

01.12.2021 | Review | Ausgabe 1/2021 Open Access

The use of biomarkers associated with leaky gut as a diagnostic tool for early intervention in autism spectrum disorder: a systematic review

Laila Al-Ayadhi, Naima Zayed, Ramesa Shafi Bhat, Nadine M. S. Moubayed, May N. Al-Muammar, Afaf El-Ansary

01.12.2021 | Genome Report | Ausgabe 1/2021 Open Access

Genomic characterization of nine Clostridioides difficile strains isolated from Korean patients with Clostridioides difficile infection

Seung Woo Ahn, Se Hee Lee, Uh Jin Kim, Hee-Chang Jang, Hak-Jong Choi, Hyon E. Choy, Seung Ji Kang, Seong Woon Roh

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Association of LRRK2 rs11564258 single nucleotide polymorphisms with type and extent of gastrointestinal mycobiome in ulcerative colitis: a case–control study

Niusha Sharifinejad, Seyed Hamidreza Mozhgani, Mahmood Bakhtiyari, Elaheh Mahmoudi

01.12.2021 | Research | Ausgabe 1/2021 Open Access

The endemic Helicobacter pylori population in Southern Vietnam has both South East Asian and European origins

Trang Hoa Nguyen, Trang Thi My Ho, Thien-Phuc Nguyen-Hoang, Shamsul Qumar, Thuc Tran Dang Pham, Quy Nhuan Bui, Dieter Bulach, Thuy-Vy Nguyen, Motiur Rahman

01.12.2021 | Short report | Ausgabe 1/2021 Open Access

Compositional variation of the human fecal microbiome in relation to azo-reducing activity: a pilot study

Sara A. Zahran, Marwa Ali-Tammam, Amal E. Ali, Ramy K. Aziz

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Comparative genomic characterization of multidrug-resistant Citrobacter spp. strains in Fennec fox imported to China

Jie Qin, Yishu Zhao, Aifang Wang, Xiaohui Chi, Peipei Wen, Shuang Li, Lingjiao Wu, Sheng Bi, Hao Xu

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Impact of Helicobacter pylori eradication on the gastric microbiome

Li-Qi Mao, Yan-Lin Zhou, Shuang-Shuang Wang, Lin Chen, Yue Hu, Lei-Min Yu, Jing-Ming Xu, Bin Lyu

01.12.2021 | Case report | Ausgabe 1/2021 Open Access

Coinfection of Clostridium perfringens and Escherichia coli in gas-producing perianal abscess diagnosed by 16S rDNA sequencing: a case report

Yang Sun, Haotian Bai, Ji Qu, Jichao Liu, Jincheng Wang, Zhenwu Du, Linlin Feng

01.12.2021 | COVID-19 | Letter to the Editor | Ausgabe 1/2021 Open Access

Improved gut microbiota features after the resolution of SARS‑CoV‑2 infection

Flavio De Maio, Gianluca Ianiro, Gaetano Coppola, Francesco Santopaolo, Valeria Abbate, Delia Mercedes Bianco, Fabio Del Zompo, Giuseppe De Matteis, Massimo Leo, Antonio Nesci, Alberto Nicoletti, Maurizio Pompili, Giovanni Cammarota, Brunella Posteraro, Maurizio Sanguinetti, Antonio Gasbarrini, Francesca Romana Ponziani

01.12.2021 | Research | Ausgabe 1/2021 Open Access

Interaction between PSMD10 and GRP78 accelerates endoplasmic reticulum stress-mediated hepatic apoptosis induced by homocysteine

Kun Xiao, Shengchao Ma, Long Xu, Ning Ding, Hui Zhang, Lin Xie, Lingbo Xu, Yun Jiao, Huiping Zhang, Yideng Jiang

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