Ausgabe 1/2025
Inhalt (110 Artikel)
Profile of intestinal fungal microbiota in acute pancreatitis patients and healthy individuals
- Open Access
- Research
Meng-Qi Zhao, Miao-Yan Fan, Meng-Yan Cui, Su-Min Chen, Jing-Jing Wang, Ying-Ying Lu, Qiao-Li Jiang
Whole-genome sequencing-based characterization of Salmonella enterica Serovar Enteritidis and Kentucky isolated from laying hens in northwest of Iran, 2022–2023
- Open Access
- Research
Shirin Vakili, Mehri Haeili, Adel Feizi, Kiarash Moghaddasi, Maryam Omrani, Arash Ghodousi, Daniela Maria Cirillo
Significant abundance of bacterial flagellin and expression of its surface localized receptor toll-like receptor 5 and cytokine interleukin-22 in South African infants with poor oral rotavirus vaccine take
- Open Access
- Brief Report
Nontlantla J. Haindongo, Mapaseka Seheri, Cliff A. Magwira
Metagenomics: a new frontier for routine pathology testing of gastrointestinal pathogens
- Open Access
- Research
Nicola Z. Angel, Mitchell J. Sullivan, Areej Alsheikh-Hussain, Liang Fang, Samantha MacDonald, Alena Pribyl, Blake Wills, Gene W. Tyson, Philip Hugenholtz, Donovan H. Parks, Paul Griffin, David L. A. Wood
Impact of invasive infections on clinical outcomes in acute pancreatitis: early predictive factors and implications for prophylactic anti-infective therapy
- Open Access
- Research
Fabienne Bender, Theresa König, Matthias Hecker, Moritz Fritzenwanker, Jacqueline Braun, Joern Pons-Kühnemann, Matthias Wolff, Andreas Hecker, Martin Reichert
Heterogeneity of Clostridioides difficile asymptomatic colonization prevalence: a systematic review and meta-analysis
- Open Access
- Research
Daniel De-la-Rosa-Martínez, Rodrigo Villaseñor-Echavarri, Diana Vilar-Compte, Virna Mosqueda-Larrauri, Paola Zinser-Peniche, Seth Blumberg
High-dose dual therapy for Helicobacter pylori eradication inducing less impact on the gut microbiota
- Open Access
- Research
Jia-Lun Guan, Ting-Ting Xu, Ya Lin, Yan-Shuai Mo, Bi-Yu He, Ying-Ying Han, Ji-Yan Li, Su-Hong Xia, Ya-Ni Zhou, Jia-Zhi Liao, Pei-Yuan Li
Long-read 16S rRNA amplicon sequencing reveals microbial characteristics in patients with colorectal adenomas and carcinoma lesions in Egypt
- Open Access
- Research
Asmaa A. El Leithy, Amira Salah El-Din Youssef, Auhood Nassar, Ramy K. Aziz, Nadin M. Khaled, Mina T. Mahrous, Ghobrial N. Farahat, Aya H. Mohamed, Yasser Mabrouk Bakr
Enterococcus and Eggerthella species are enriched in the gut microbiomes of COVID-19 cases in Uganda
- Open Access
- Research
Carolina Agudelo, David Patrick Kateete, Emmanuel Nasinghe, Rogers Kamulegeya, Christopher Lubega, Monica Mbabazi, Noah Baker, Kathryn Y. Lin, Chang C. Liu, Arthur Shem Kasambula, Edgar Kigozi, Kevin Komakech, John Mukisa, Kassim Mulumba, Patricia Mwachan, Brenda Sharon Nakalanda, Gloria Patricia Nalubega, Julius Nsubuga, Diana Sitenda, Henry Ssenfuka, Giana T. Cirolia, Jeshua T. Gustafson, Ruohong Wang, Moses Luutu Nsubuga, Fahim Yiga, Sarah A. Stanley, Bernard Ssentalo Bagaya, Alison Elliott, Moses Joloba, Ashley R. Wolf
Gut microbiota dysbiosis and associated immune response in systemic lupus erythematosus: impact of disease and treatment
- Open Access
- Research
Aya Y. Ali, Sara A. Zahran, Mervat Eissa, Mona T. Kashef, Amal Emad Ali
Intestinal mucus: the unsung hero in the battle against viral gastroenteritis
- Open Access
- Review
Waqar Saleem, Ateeqa Aslam, Mehlayl Tariq, Hans Nauwynck
Evaluation of a rapid fluorescence immunoassay for detecting Campylobacter antigens in stool samples
- Open Access
- Research
Lucie Bénéjat, Astrid Ducournau, Juliette Gebhart, Emilie Bessede, Juergen Becker, Marine Jauvain, Philippe Lehours
Salivary shield: Rhodnius prolixus salivary glandular extract reduces intestinal immunopathology and protects against Toxoplasma gondii infection
- Open Access
- Research
Roberto Augusto Pereira Sousa, Jean Henrique Nunes de Paula, Rafaela José Silva, Samuel Cota Teixeira, Flávia Batista Ferreira França, Amanda Helena Leão Gonçalves, Túlio Rodrigues Oliveira Silva, Maria Julia Granero-Rosa, Murilo Vieira Silva, Marcos de Lucca Moreira Gomes, Marcos Vinícius Silva, Virmondes Rodrigues Junior, José Roberto Mineo, Bellisa Freitas Barbosa, Eloisa Amália Vieira Ferro, Carlo José Freire Oliveira, Angelica Oliveira Gomes
Molecular confirmation of Cryptosporidium and Cyclospora species in children with acute diarrhoea in Quindio region, Colombia
- Open Access
- Research
Jessica Triviño-Valencia, Alejandro Nati-Castillo, Nancy Yhomara Cabeza, Fabiana Lora-Suarez, Jorge Gómez-Marín
Correction: Molecular characterization and risk analysis of Giardia duodenalis assemblages in corticosteroid-treated and non-treated patients in Ismailia, Arab Republic of Egypt
- Open Access
- Correction
Shahira Abdelaziz Ali Ahmed, Amira Bakr Mokhtar, Samar Farag Mohamed, Marwa Ibrahim Saad El‑Din, Catherine O.’Dowd Phanis, Stefani Kazamia, Chad Schou, Paweł Gładysz, Anna Lass, Annalisa Quattrocchi, Panagiotis Karanis, Samer Eid Mohamed Gad
Prevalence of pathogens associated with neonatal gastrointestinal infections: a systematic review and meta-analysis
- Open Access
- Review
Xinyu Liu, Rui Zhang, Mengdie Wang, Chuncai Tang, Feifei Yang, Qingjuan Yang, Changyong Huang, Ying Zhang, Zhengmin Ren, Liqiao Liu, Guozhong Zhou, Jia Li
Clostridioides difficile concentration-dependant alterations in gut microbiota of asymptomatic infants
- Open Access
- Research
Aleksander Mahnic, Jana Lozar Krivec, Darja Paro-Panjan, Andreja Valcl, Tanja Obermajer, Bojana Bogovič Matijašić, Evgen Benedik, Petra Bratina, Maja Rupnik
Chronic hepatitis B virus infection imbalances short-chain fatty acids and amino acids in the liver and gut via microbiota modulation
- Open Access
- Research
Wendi Zhang, Yuwei Wu, Min Cheng, Haiming Wei, Rui Sun, Hui Peng, Zhigang Tian, Yongyan Chen
The effects of probiotic treatment with Bifidobacterium breve, Bif195 for small intestinal Crohn’s disease and the gut microbiome: results from a randomised, double-blind, placebo-controlled trial
- Open Access
- Research
Ida Marie Bruun Grønbæk, Sofie Ingdam Halkjær, Sarah Mollerup, Esben Holm Hansen, Sarah Juel Paulsen, Sara Engel, Klaus Theede, Rune Wilkens, Trine Boysen, Andreas Munk Petersen
Sero—salivary detection of H. pylori immunoglobulins and parasitic infection among healthcare individuals suffering from gastrointestinal disorders with correlation to personal hygiene
- Open Access
- Research
Faika Hassanein, Mohamed S. Abdel-Latif, Amany I. Shehata
Coupling culturomics and metagenomics sequencing to characterize the gut microbiome of patients with cancer treated with immune checkpoint inhibitors
- Open Access
- Research
Khoudia Diop, Babacar Mbaye, Somayeh Nili, Alysé Filin, Myriam Benlaifaoui, Julie Malo, Anne Sophie Renaud, Wiam Belkaid, Sebastian Hunter, Meriem Messaoudene, Karla A. Lee, Arielle Elkrief, Bertrand Routy
Acute gastroenteritis due to Arcobacter butzleri: an emerging pathogen
- Open Access
- Brief Report
Cristina García-Salguero, Carlos González-Corralejo, Jose Marroyo Laso, Alberto Delgado-Iribarren García-Campero
Insights into the utilisation of 1,2-propanediol and interactions with the cell envelope of Clostridium perfringens
- Open Access
- Research
Lucía Huertas-Díaz, Louise Guldager Vestergaard, Angeliki Marietou, Marta Irla, Jürgen Behr, Mark M. Somoza, Anders Feilberg, Clarissa Schwab
Fecal profiling reveals a common microbial signature for pancreatic cancer in Finnish and Iranian cohorts
- Open Access
- Research
Heidelinde Sammallahti, Sama Rezasoltani, Satu Pekkala, Arto Kokkola, Hamid Asadzadeh Agdaei, Mehdi Azizmohammad Looha, Reza Ghanbari, Farhad Zamani, Amir Sadeghi, Virinder Kaur Sarhadi, Marja Tiirola, Pauli Puolakkainen, Sakari Knuutila
Correction: Molecular confirmation of Cryptosporidium and Cyclospora species in children with acute diarrhoea in Quindio region, Colombia
- Open Access
- Correction
Jessica Triviño-Valencia, Alejandro Nati-Castillo, Nancy Yhomara Cabeza, Fabiana Lora-Suarez, Jorge Gómez-Marín
Transmission pathways of Campylobacter jejuni between humans and livestock in rural Ethiopia are highly complex and interdependent
- Open Access
- Research
Nitya Singh, Cecilie A. N. Thystrup, Bahar Mummed Hassen, Menuka Bhandari, Gireesh Rajashekara, Tine M. Hald, Mark J. Manary, Sarah L. McKune, Jemal Yusuf Hassen, Helen L. Smith, Jonathan C. Marshall, Nigel P. French, Arie H. Havelaar, Abadir Jemal Seran, Abdulmuen Mohammed Ibrahim, Amanda E. Ojeda, Bahar Mummed Hassen, Belisa Usmael Ahmedo, Cyrus Saleem, Dehao Chen, Efrah Ali Yusuf, Getnet Yimer, Ibsa Abdusemed Ahmed, Ibsa Aliyi Usmane, Jafer Kedir Amin, Kedir Abdi Hassen, Kedir Teji Roba, Kunuza Adem Umer, Karah Mechlowitz, Loic Deblais, Mahammad Mahammad Usmail, Mark J. Manary, Mawardi M. Dawid, Mussie Bhrane, Nur Shaikh, Wondwossen Gebreyes, Xiaolong Li, Yang Yang, Yenenesh Demisie Weldesenbet, Zelalem Hailu Mekuria
Thomasclavelia ramosa and alcohol-related hepatocellular carcinoma: a microbial culturomics study
- Open Access
- Research
Reham Magdy Wasfy, Anissa Abdoulaye, Patrick Borentain, Babacar Mbaye, Maryam Tidjani Alou, Aurelia Caputo, Claudia Andrieu, Giovanna Mottola, Anthony Levasseur, Matthieu Million, Rene Gerolami
Fecal microbiota transplantation alleviates immunosuppressant-associated diarrhea and recurrent urinary tract infection in kidney transplant recipients: a retrospective analysis
- Open Access
- Research
Jianmin Hu, Ding Liu, Guorong Liao, Ying Guo, Min Li, Jun Liao, Hua Chen, Song Zhou, Siqiang Yang, Shichao Li, Yongguang Liu, Ming Zhao
Genome-based analyses from four clinically-isolated strains refined the taxonomy of Proteus genomosp. 6 and revealed their underestimated role in gastrointestinal diseases
- Open Access
- Genome Report
Zhiyun Zhang, Jing He, Xueqing Liu, Linqian Huang, Zhou Zeng, Yao Peng, Xunchao Cai
Fecal carriage of multidrug-resistant organisms increases the risk of hepatic encephalopathy in patients with cirrhosis: insights from gut microbiota and metabolite features
- Open Access
- Research
Pei-Shan Wu, Pei-Chang Lee, Tien-En Chang, Yun-Cheng Hsieh, Chi-Wei Huang, Chao-Hsiung Lin, Yi-Long Huang, Yi-Tsung Lin, Teh-Ia Huo, Bernd Schnabl, Kuei-Chuan Lee, Ming-Chih Hou
Chicken as a carrier of emerging virulent Helicobacter species: a potential zoonotic risk
- Open Access
- Research
Ahmed Samir, Hala M. Zaher
Understanding the etiology of diarrheal illness in Cambodia in a case-control study from 2020 to 2023
- Open Access
- Research
Paksathorn Kietsiri, Siriporn Sornsakrin, Samon Nou, Wilawan Oransathid, Dutsadee Peerapongpaisarn, Wirote Oransathid, Panida Nobthai, Patcharawalai Wassanarungroj, Siriphan Gonwong, Pimmada Sakpaisal, Nuanpan Khemnu, Somethy Sok, Sokh Vannara, Chiek Sivhour, Sidonn Krang, Ly Sovann, Em Sovannarith, Woradee Lurchachaiwong, Sidhartha Chaudhury, Nattaya Ruamsap, Paphavee Lertsethtakarn
Retraction Note: Detection of SARS-CoV-2 from patient fecal samples by whole genome sequencing
- Open Access
- Retraction Note
Andreas Papoutsis, Thomas Borody, Siba Dolai, Jordan Daniels, Skylar Steinberg, Brad Barrows, Sabine Hazan
Correction: Fecal profiling reveals a common microbial signature for pancreatic cancer in Finnish and Iranian cohorts
- Open Access
- Correction
Heidelinde Sammallahti, Sama Rezasoltani, Satu Pekkala, Arto Kokkola, Hamid Asadzadeh Agdaei, Mehdi Azizmohammad Looha, Reza Ghanbari, Farhad Zamani, Amir Sadeghi, Virinder Kaur Sarhadi, Marja Tiirola, Pauli Puolakkainen, Sakari Knuutila
Antibiotic resistance in Helicobacter pylori: a genetic and physiological perspective
- Open Access
- Review
Rania G. Elbaiomy, Xiaoling Luo, Rong Guo, Shiyuan Deng, Meifang Du, Ahmed H. El-Sappah, Mohammed Bakeer, Mahmoud M. Azzam, Ahmed A. Elolimy, Mahmoud Madkour, Zaixin Li, Zhi Zhang
Characteristics of ESBL-positive Klebsiella pneumoniae isolated from paired children with and without diarrhea
- Open Access
- Research
Yuan Zhang, Mengyu Wang, Zhenpeng Li, Yao Peng, Yuhan Yang, Xiao Liu, Zhe Li, Biao Kan, Mei Zeng, Xin Lu
Anti-urease therapy: a targeted approach to mitigating antibiotic resistance in Helicobacter pylori while preserving the gut microflora
- Open Access
- Review
Christina Almarmouri, Mohammed I. El-Gamal, Mohamed Haider, Mohamad Hamad, Shamsul Qumar, Merylin Sebastian, Rose Ghemrawi, Jibran Sualeh Muhammad, Christophe Burucoa, Ghalia Khoder
The functional landscape of the appendix microbiome under conditions of health and disease
- Open Access
- Review
Md Shahjalal Sagor, Tarequl Islam, Noshin Tabassum Tamanna, Md. Kamrul Islam Bappy, Danishuddin, Md Azizul Haque, Maximilian Lackner
Prevalence of and risk factors for Helicobacter pylori infection in children under 64 months in Thimphu, Bhutan, and introducing the new in-house immunochromatography test kit: a cross-sectional study
- Open Access
- Research
Passang Lhamo Sherpa, Takashi Matsumoto, Kinley Tshering, Birendra Pradhan, Junko Akada, Yoshio Yamaoka
The gut-lung axis and microbiome dysbiosis in non-tuberculous mycobacterial infections: immune mechanisms, clinical implications, and therapeutic frontiers
- Open Access
- Review
Fangfang Zhu, Hao Ying, Seyed Davar Siadat, Abolfazl Fateh
Unveiling the hidden threat: prevalence of Enterocytozoon bieneusi and other intestinal parasitic infections among organ transplant recipients in Southern Iran
- Open Access
- Brief Report
Mohammad Hossein Motazedian, Leila Morabi, Shahrokh Ezzatzadegan Jahromi, Mojtaba Shafiekhani, Saeed Shahabi, Hamed Nikoupour Dailami, Siavash Gholami, Bahador Sarkari
Exploring the role of intestinal pathogenic bacteria in metronidazole-induced bone loss: focus on Klebsiella variicola
- Open Access
- Research
Xia Chen, Hongming Li, Guang Wang, Zhenxing Wang, Yan Lv, Hui Xie, Sheng Zhu
Tissue-specific transcriptomic adaptation in three strains of chickens during coinfections with parasites
- Open Access
- Research
Oyekunle John Oladosu, Henry Reyer, Nares Trakooljul, Solvig Görs, Cornelia C. Metges, Gürbüz Daş
Risk factors and outcomes of Clostridioides difficile infection in patients with colorectal cancer: critical perspective in management
- Open Access
- Review
Hamideh Raeisi, Spigaglia Patrizia, Amir Sadeghi, Fabrizio Barbanti, Glenn Tillotson, Hossein Safarpour, Mohamadreza Zali, Ehsan Nazemalhosseini Mojarad
The role of probiotics in promoting systemic immune tolerance in systemic lupus erythematosus
- Open Access
- Review
Asma’a H. Mohamed, Alaa Shafie, Rithab Ibrahim Al-Samawi, Mohammad Chand Jamali, Amal Adnan Ashour, Mohammed Fareed Felemban, Ali Alqarni, Irshad Ahmad, Nasrin Mansuri, Fuzail Ahmad, Adil Abdelrahim Mohammed Yousif
Mutational landscape of the surface antigen of hepatitis B virus in patients with hepatocellular carcinoma
- Open Access
- Research
Arwa Bagasi, Fatimah Alghnnam, Marie Bohol, Fatimah Alhamlan, Arwa Al-Qahtani, Hani Alothaid, Ayman Abdo, Faisal Sanai, Ahmad Al-Qahtani
Bloodstream infection by Lactobacillus rhamnosus in a haematology patient: why metagenomics can make the difference
- Open Access
- Case Report
Cataldo Maria Mannavola, Flavio De Maio, John Marra, Barbara Fiori, Giulia Santarelli, Brunella Posteraro, Simona Sica, Tiziana D’Inzeo, Maurizio Sanguinetti
Pathogenicity of Arcobacter cryaerophilus in two human intestinal cell lines
- Open Access
- Research
Antonia Bachus, Sarah Beyer, Roland Bücker, Soroush Sharbati, Thomas Alter, Greta Gölz
Stunting is associated with persistent and transferable alterations in the gut microbiome
- Open Access
- Research
Joshua O. Amimo, C. N. Kunyanga, S. A. Raev, M. Kick, H. Micheal, L. J. Saif, Anastasia N. Vlasova
Tripartite interplay: immune reconstitution dynamics in AIDS, gut microbiota, and Helicobacter pylori infection: current advances and therapeutic prospects
- Open Access
- Research
Jingjing He, Shengkui Tan, Jiannan Lv
Determinants of Campylobacter species diversity in infants and association with family members, livestock, and household environments in rural Eastern Ethiopia
- Open Access
- Research
Amanda Ojeda, Loïc Deblais, Bahar Mummed, Mussie Brhane, Kedir A. Hassen, Belisa Usmael Ahmedo, Yenenesh Demisie Weldesenbet, Dehao Chen, Xiaolong Li, Cyrus Saleem, Mark J. Manary, Luiz F. W. Roesch, Sarah L. McKune, Arie H. Havelaar, Gireesh Rajashekara, Abadir Jemal Seran, Abdulmuen Mohammed Ibrahim, Bahar Mummed Hassen, Efrah Ali Yusuf, Getnet Yimer, Ibsa A. Ahmed, Ibsa Aliyi Usmane, Jafer Kedir Amin, Jemal Y. Hassen, Kunuza Adem Umer, Karah Mechlowitz, Kedir Teji Roba, Mussie Bhrane, Mawardi M. Dawid, Mahammad Mahammad Usmail, Nigel P. French, Nur Shaikh, Nitya Singh, Wondwossen A. Gebreyes, Yang Yang, Zelalem Hailu Mekuria
Salmonella prevalence and serovar distribution in reptiles: a systematic review and meta-analysis
- Open Access
- Research
Claire Muslin, Paula Salas-Brito, Dayana Coello, Diana Morales-Jadán, Carolina Viteri-Dávila, Marco Coral-Almeida
Profiling of the tumor-associated microbiome in patients with hepatocellular carcinoma
- Open Access
- Research
Christian Schulz, Ramiro Vilchez-Vargas, Elif Öcal, Nadine Koch, Daniel Puhr-Westerheide, Lu Fornés Burnell, Heidrun Hirner-Eppeneder, Julia Benckert, Maciej Pech, Peter Reimer, Chris Verslype, Christiane Kuhl, Albert Tran, Jens Ricke, Peter Malfertheiner, Marianna Alunni-Fabbroni
Comparative study of liver injury protection by Akkermansia muciniphila and Faecalibacterium prausnitzii interventions in live and cell-free supernatant forms via targeting the hepcidin – ferroportin axis in mice with CCl₄-induced liver fibrosis
- Open Access
- Research
Sara Ahmadi Badi, Hananeh Tavakoli Aval, Hamid Reza Moradi, Amin Malek, Seyed Amirhesam Seyedi, Mehdi Davari, Ahmad Bereimipour, Soghra Khani, Shohreh Khatami, Seyed Davar Siadat
Bacteroides- and Prevotella-enriched gut microbial clusters associate with metabolic risks
- Open Access
- Research
Yi Rou Bah, Kairi Baba, Dayang Nurul Asyiqin Binte Mustafa, Satoshi Watanabe, Aya K. Takeda, Tomoya Yamashita, Kazuyuki Kasahara
Gut microbiome and gastric cancer: microbial interactions and therapeutic potential
- Open Access
- Review
Maged Tharwat Elghannam, Moataz Hassan Hassanien, Yosry Abdelrahman Ameen, Emad Abdelwahab Turky, Gamal Mohammed ELattar, Ahmed Aly ELRay, Mohammed Darwish ELTalkawy
Gut microbiome in gastrointestinal neoplasms: from mechanisms to precision therapeutic strategies
- Open Access
- Review
Jiaqian Song, Wei Zhang, Deqiang Wang
Assessment of immunological and hematological parameters in Blastocystis species-infected chronic leukemic patients
- Open Access
- Research
Heba Elhadad, Bassam Mohamed Abdel-Fattah, Sally A. M. Saleh, Moustafa Abo El-Hoda, Hend El-Taweel
Gut microbiota profile in newly diagnosed pulmonary tuberculosis patients: an exploratory pilot study in southern India
- Open Access
- Research
Tejaswini Baral, Shaik Mohammad Abdul Fayaz, Mohan K. Manu, Chandrashekar Udyavara Kudru, Jitendra Singh, Chiranjay Mukhopadhyay, Mahadev Rao, Kavitha Saravu, Sonal Sekhar Miraj
Recent insights on challenges encountered with phage therapy against gastrointestinal-associated infections
- Open Access
- Review
Reem A. Youssef, Masarra M. Sakr, Rania I. Shebl, Khaled M. Aboshanab
Positive selection at core genes may underlie niche adaptation in Fusobacterium animalis
- Open Access
- Research
Diego Forni, Audun Sivertsen, Rachele Cagliani, Alessandra Mozzi, Cristian Molteni, Øyvind Kommedal, Manuela Sironi
Streptococcus gallolyticus supernatant induces M2 macrophage polarization and activates IL-17 F signaling in colorectal tumorigenesis
- Open Access
- Research
Jiaqi Wang, Yan Zhang, Duo Luo, Jing Xu, Xin Nie, Chen Huang, Hailan Zhao, Minzheng Zhu, Xue Guo, Yong Zhang, Wenjing Qiu, Haoming Xu, Yuqiang Nie, Youlian Zhou
Phenotypic characterization and complete genome of a tumorigenic pathobiont Escherichia coli LI60C3
- Open Access
- Research
Linda Chia-Hui Yu, Shu-Chen Wei, Yi-Hsuan Li, Chung-Yen Huang, Yu-Chen Pai, Yuan-Mao Hung, Liang-Chuan Lai, Yen-Hsuan Ni
Dietary footprints of a global parasite: diagnosing Dibothriocephalus nihonkaiensis in non-endemic regions
- Open Access
- Case Report
Wilson G.W. Goh, Jean-Marc Chavatte, Gabriel Z.R. Yan, Yuan Yi Constance Chen, Mark Dhinesh Muthiah, Lionel H.W. Lum
Lactobacillus reuteri DSM 17,938 ameliorates LPS-induced depression-like and anxiety-like behaviors by modulating gut microbiota and brain metabolic function
- Open Access
- Research
Xiaolong Mo, Siyi Guo, Dian He, Qisheng Cheng, Yichun Yang, Haiyang Wang, Yikun Ren, Lanxiang Liu, Peng Xie
Associations between gut microbiome and circulating cytokines: a cross-sectional analysis in the FINRISK 2002 population cohort
- Open Access
- Research
Hassan Diab, Ville Langén, Li-Fang Yeo, Veikko Salomaa, Aki Havulinna, Leo Lahti, Katariina Pärnänen, Rob Knight, Sirpa Jalkanen, Marko Salmi, Teemu Niiranen, Joonatan Palmu
Tracing the evolutionary dynamics of carbapenem-resistant Escherichia coli in recurrent and multi-site infections
- Open Access
- Research
Ya-Yu Cheng, Ya-Min Tsai, Yao-Chi Chuang, Yu-Hua Fan, Ming-Cheng Wang, Yu-Chen Chen, Ching-Hao Teng, Pei-Yun Kuo, Tran Thi Dieu Thuy, Carl Jay Ballena Bregente, Yen-Zhen Zhang, Yi-Hong Lee, Ding-Ze Ho, Cheng-Yen Kao
Vonoprazan vs. high-dose esomeprazole in bismuth-containing quadruple therapy for Helicobacter pylori rescue treatment: a retrospective cohort study
- Open Access
- Research
Xuetian Qian, Bo Gao, Zhenqiu Chen, Zhenyu Zhang, Zongdan Jiang
Extracellular vesicles in intestinal protozoa: hidden mediators of host-parasite communication
- Open Access
- Review
Manouchehr Fadaee, Masoud Lahouty, Fatemeh Ramzi, Fatemeh Alizadeh, Sima Roshanfar, Tohid Kazemi, Adel Spotin, Kareem Hatam-Nahavandi, Ehsan Ahmadpour
Systemic IgG responses to glycosylated mucinase YghJ after experimental enterotoxigenic Escherichia coli infection
- Open Access
- Research
Saman Riaz, Hans Steinsland, Anders Boysen, Kurt Hanevik
Analysis of antimicrobial resistance patterns and genetic mutations in Helicobacter pylori from West Bengal, India depicting escalating clarithromycin and high levofloxacin resistance
- Open Access
- Research
Sangita Paul, Bipul Chandra Karmakar, Nirupam Roy, Sujit Chaudhuri, Asish Kumar Mukhopadhyay
Global research landscape and advancements on the links between the gut microbiome and insulin resistance: hot issues, trends, future directions, and bibliometric analysis
- Open Access
- Research
Sa’ed H. Zyoud, Muna Shakhshir, Amani S. Abushanab, Amer Koni, Moyad Shahwan, Ammar A. Jairoun, Banan M. Aiesh, Samah W. Al-Jabi
Comprehensive evaluation and progress of colorectal cancer screening methods
- Open Access
- Review
Huang Jiaqun, Zhuang Jing, Yin Yunfeng, Huang Yiren, Wu Yinhang, Han Shuwen, Wu Wei
Helicobacter hepaticus CdtB promoted brain impairment in BALB/c mice via gut-brain axis
- Open Access
- Research
Yuanyuan Zhang, Linghan Yang, Yi Wang, Jun Yin, Tao Wang, Liqi Zhu, Quan Zhang
Helicobacter pylori infection is associated with an increased risk of chronic obstructive pulmonary disease and asthma
- Open Access
- Research
Chiwook Chung, Kyu Na Lee, Kyungdo Han, Dong Wook Shin, Sei Won Lee
Increased GII.3[P12] norovirus outbreaks and viral whole genome analysis in Beijing, China during 2021 and 2023
- Open Access
- Research
Jiamei Fu, Lingyu Shen, Weihong Li, Yi Tian, Baiwei Liu, Yu Wang, Lei Jia, Zhaomin Feng, Daitao Zhang, Peng Yang, Zhiyong Gao, Quanyi Wang
Gut bacteria: protective mediators, pathogenic contributors and novel therapeutic targets in Candida albicans infections
- Open Access
- Review
Jieyu Song, Xianglan Yang, Xiaoyu Liu, Jun Li
Fusobacterium nucleatum and non-coding RNAs: orchestrating oncogenic pathways in colorectal cancer
- Open Access
- Review
Zahra Sadeghloo, Sara Ebrahimi, Mojdeh Hakemi-Vala, Mehdi Totonchi, Amir Sadeghi, Nayeralsadat Fatemi
Salmonella typhimurium downregulates circHIPK2 expression via CeRNA mechanism to inhibit cell migration and tumorigenesis
- Open Access
- Research
Fei Wang, Xiaoting Luan, Huihui Ma, Xiaoyi Wang, Minchi Chen, Yuyu Xu
Gut microbiome-based machine learning model for early colorectal cancer and adenoma screening
- Open Access
- Research
Yi-Jian Tsai, Wei-Ni Lyu, Nai-Shun Liao, Pei-Chun Chen, Mong-Hsun Tsai, Eric Y. Chuang
Exploring the role of gut microbiota in inflammatory bowel disease patients comorbid with non-alcoholic fatty liver disease
- Open Access
- Research
Jiachen Hu, Chen Zhou, Lu Zhang, Yuzhu Chen, Jun Li, Junxia Li, Liping Duan
Gut microbiota alterations and their association with tumorigenic pathways in colorectal cancer: insights from a pooled analysis of 109 microbiome datasets
- Open Access
- Research
Shafiul Haque, Farkad Bantun, Naif A. Jalal, Hani Faidah, Ahmad O. Babalghith, Mohammad Ahmad Alobaidy, Abdullah F. Aldairi, Faraz Ahmad
Investigating the relationship between intestinal microbiota and Th1/Th2/Th17 imbalance in subclinical hypothyroidism during the first half of pregnancy: a multi-omics approach
- Open Access
- Research
Pengkun Lin, Yajuan Xu, Zongzong Sun, Jingjing Li, Yanjie Ban, Miao Zhang, Yixin Wang, Chenchen Zhang
Effects of exogenous protease supplementation of diets containing animal proteins or not on Campylobacter jejuni colonization and on the intestinal microbiota of broiler chickens
- Open Access
- Research
Sophie Chagneau, Marie-Lou Gaucher, Philippe Fravalo, Emma Nouhaud, Elizabeth Santin, Ludovic Lahaye, Alexandre Thibodeau
Epidemiological, clinical, and molecular characteristics of coxsackievirus A2 infections during a herpangina outbreak in children on an Island in Eastern China in 2024: a surveillance-based study
- Open Access
- Research
Bo Xing, Linjie Hu, Xiaosong Hu, Yuxiang Sun, Zhenzhen Liang, Jian Fu, Yuxia Liang, Yijuan Chen, You Li, Lingxia Chen, Lijun Wang, Weiting Wang, Yihan Lu, Shenyu Wang
Progress and prospects of gut microbiota-targeted therapy for primary biliary cholangitis
- Open Access
- Review
Xuan Tang, Xin You
The diguanylate cyclase and phosphodiesterase locally regulate the virulence factors in Vibrio vulnificus
- Open Access
- Research
Jhih-Ren Yang, Kai-Ting Chen, Yi-Wen Chen, Shu-Jung Lai
Gut microbiome dysbiosis in hepatocellular carcinoma patients with persistent HCV viremia versus viral clearance: a cross-sectional study
- Open Access
- Research
Hany R. Hashem, Tasnem Yehia, Marwa Azab, Ali Abdellah, Ibrahim A. Amin, Mohammed Salah, Mohammed Ramadan
Effect of Moringa oleifera and ivermectin nanoparticles on the immunopathological response during experimental trichinosis in mice
- Open Access
- Research
Magda Said Ahmed Abdeltawab, Alshaimaa M. R. Hamed, Shimaa Saad El-Din, Engy Medhat, Mai Samir, Amal M. Mahfoz, Abdel Wahab M. Mahmoud, Basma Emad Aboulhoda, Hend Ahmed Abdallah, Hanaa S. Sallam, Mona Said El-Sherbini
Tissue and stool microbiome in pediatric inflammatory bowel disease patients: diversity differs in patients with relapsing and non-relapsing Crohn’s disease
- Open Access
- Research
Matěj Hrala, Tereza Deissová, Petr Andrla, Lenka Radová, Saša Zahornacká, Júlia Bohošová, Táňa Macháčková, Leoš Křen, Matěj Hrunka, Tereza Pinkasová, Martina Ambrozová, Juraj Bosák, Ondřej Slabý, David Šmajs, Petr Jabandžiev
Murine model of antibiotic-associated Staphylococcus aureus gastrointestinal infections (SAGII) and colonization
- Open Access
- Research
Maria Niamba, Stephanie Yang, Liahm Blank, Liliko Watanabe, Efren Heredia, Ernesto Abel-Santos
Fusobacterium nucleatum: a transboundary pathogen in host-microbiota networks
- Open Access
- Review
Xueyan Gao, Feiyu Cao, Yonghao Li, Jingjie Huang, Xuan Hu, Ziyun Li
CagA-positive H. pylori may protect against disease of the hands, feet, and mouth
- Open Access
- Research
Qiuying Du, Weifeng Wang, Fenglian Deng, Jianyu Cao, Xiaoxian Wei, Zengjing Liu, Chunyi Long, Jing Pan, Liudan Liang, Guangfu Pang, Yuefeng Huang, Shengkui Tan, Jiannan Lv
Cross-country multi-modal evidence links Aspergillus to biliary atresia
- Open Access
- Research
Song-Wei Huang, Chia-Ray Lin, Ya-Hui Chang, Yen-Hsuan Ni, Huey-Ling Chen, Hong-Hsing Liu
Nasopharyngeal viral infection as a source of elevated fecal calprotectin: a diagnostic pitfall in intestinal inflammation
- Open Access
- Brief Report
Chun-Ting Chen, Annemiek A. van der Eijk, Jolanda J.C. Voermans, Hanneke J. van Vuuren, Maikel P. Peppelenbosch, Vincent T. Janmaat
High resolution melting real-time PCR for genotyping of Giardia lamblia assemblages A and B regardless of parasite load
- Open Access
- Research
Monique Pinto-Gonçalves, Beatriz Iandra da Silva Ferreira, Alda Maria Da-Cruz, Otacílio da Cruz Moreira, Maria Fantinatti
Extracts from Plectranthus asirensis and Premna resinosa inhibit Helicobacter pylori-induced epithelial cell damage, DNA double-strand breaks and inflammation
- Open Access
- Research
Omar Noman, Nicole Tegtmeyer, Bodo Linz, Mathias Müsken, Steffen Backert
Distinct gut microbiota signatures and metabolic dysregulation in individuals with type 1 diabetes: insights into a microbiome-metabolite axis
- Open Access
- Research
Shafiul Haque, Abdulhadi I. Bima, Ahmad O. Babalghith, Naif A. Jalal, Abdullah F. Aldairi, Mohd Wahid, Faraz Ahmad, Farkad Bantun
Gut mucosa-associated microbiota signatures in healthy individuals and patients at different stages of liver disease: a pilot study
- Open Access
- Research
Debora Compare, Bruno Fosso, Marcella Nunziato, Costantino Sgamato, Federica Di Maggio, Valeria D’Argenio, Ilaria Granata, Marco Sanduzzi Zamparelli, Domenica Lovero, Giorgio Casaburi, Alba Rocco, Pietro Coccoli, Graziano Pesole, Francesco Salvatore, Gerardo Nardone
Intestinal oxygen and microbiota crosstalk: implications for pathogenesis of gastrointestinal diseases and emerging therapeutic strategies
- Open Access
- Review
Tianze Shang, Rui Zhang, Yani Liu, Shaojun Shi
Patients with inflammatory bowel disease exhibit increased susceptibility to HCoV-NL63
- Open Access
- Research
Tingting Ning, Nianchen Liu, Qi Jiang, Nan Zhang, Shengtao Zhu
Machine learning approach and internet of things technologies to unravel the complex interaction between microbiome-metabolome in inflammatory bowel disease: a new frontier in precision medicine
- Open Access
- Review
Orazio Palmieri, Anna Lucia Cannarozzi, Anna Latiano, Luca Massimino, Fabrizio Bossa, Matteo Riva, Federica Ungaro, Maria Guerra, Anna Laura Pia Di Brina, Sonia Carparelli, Gionata Fiorino, Francesco Perri, Silvio Danese
Risk stratification of spontaneous bacterial peritonitis recurrence: integrating acute kidney injury, biomarkers, composite scores, and machine learning models
- Open Access
- Research
Nasser Mousa, Alaa Elmetwalli, Mostafa Abdelsalam, Mohamed Wahba, Mohamed Selim, Dina Nour, Eman Abdelkader, Ahmed El-Eraky, Amany Hasson, Ahmed E Taha, Eman Mousa, Adel El-Assmy, Ali El-Assmy, Sherif Shiha, Muhammad Diasty, Mohammed Abdelaziz, Shereen A. Mourad, Nader Elmalky, Marwa Mansour
Gut microbiota and intestinal polyps: a systematic review and meta-analysis based on 16S rRNA gene sequencing
- Open Access
- Review
Qian Wu, Siyu Lu, Lizhong Wang, Xiaoli Liao, Dangheng Wei
Synergistic potentiation of antibiotics by chamomile phytochemicals against multidrug-resistant Helicobacter pylori
- Open Access
- Research
Menna M. M. Mohammed Ali, Hala Mohamed Abu Shady, Sayed. M. M, Hayam A. E. Sayed
Genotyping and molecular profiling of intestinal microsporidiosis and cryptosporidiosis in HIV-infected patients in Alborz Province, Iran
- Open Access
- Research
Benyamin Djawadi, Nazila Parvizi, Hossein Vazini, Milad Badri, Aida Vafae Eslahi, Ioannis Adamopoulos, Mahendra Pal, Majid Pirestani
Gut microbiota and host transcriptome interactions reveal diagnostic biomarkers in MASLD-associated hepatocellular carcinoma
- Open Access
- Research
Thananya Jinato, Jakkrit Khamjerm, Satjapot Manprasong, Nutta Iadsee, Pisit Tangkijvanich, Intawat Nookaew, Natthaya Chuaypen
Lactobacillus probiotics potential in Blastocystis infection: in vitro and in vivo studies
- Open Access
- Research
Mona Gamal Baz Mohamed, Ibrahim A. Aboul Asaad, Dareen Abd Elaziz Mohamed Ali, Dalia Abdelmageed Ahmad Elmehy, Sarah M. Abdo
Survival implications of the age-associated tumor and normal adjacent tissue microbiome among colorectal cancer patients
- Open Access
- Research
Maria F. Gomez Morales, Stephanie R. Hogue, Scott Pitcher, Daniel Jeong, Ivana Radosavljevic, Amalia Stefanou, Seth I. Felder, Jessica R. Burns, Scot E. Dowd, Emily Vogtmann, Rashmi Sinha, Liang Wang, Xuefeng Wang, Jennifer B. Permuth, Cynthia L. Sears, Shaneda Warren Andersen, K. Leigh Greathouse, Jacob K. Kresovich, Mark S. Friedman, Erin M. Siegel, Doratha A. Byrd
Correlation between the antibiotic resistance and virulence determinants of vancomycin-resistant enterococci: paradoxical involvement of vanA in phenotypic resistance to teicoplanin
- Open Access
- Research
Rana M. Amr, Amr S. Bishr, Khaled M. Aboshanab, Nadia A. Hassouna
