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Erschienen in: Journal of Inherited Metabolic Disease 4/2017

07.06.2017 | SSIEM 2016

High-content drug screening for rare diseases

verfasst von: F. Bellomo, D. L. Medina, E. De Leo, A. Panarella, F. Emma

Erschienen in: Journal of Inherited Metabolic Disease | Ausgabe 4/2017

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Abstract

Per definition, rare diseases affect only a small number of subjects within a given population. Taken together however, they represent a considerable medical burden, which remains poorly addressed in terms of treatment. Compared to other diseases, obstacles to the development of therapies for rare diseases include less extensive physiopathology knowledge, limited number of patients to test treatments, and poor commercial interest from the industry. Recently, advances in high-throughput and high-content screening (HTS and HCS) have been fostered by the development of specific routines that use robot- and computer-assisted technologies to automatize tasks, allowing screening of a large number of compounds in a short period of time, using experimental model of diseases. These approaches are particularly relevant for drug repositioning in rare disease, which restricts the search to compounds that have already been tested in humans, thereby reducing the need for extensive preclinical tests. In the future, these same tools, combined with computational modeling and artificial neural network analyses, may also be used to predict individual clinical responses to drugs in a personalized medicine approach.
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Literatur
Zurück zum Zitat Almaca J, Faria D, Sousa M et al (2013) High-content siRNA screen reveals global ENaC regulators and potential cystic fibrosis therapy targets. Cell 154:1390–1400CrossRefPubMed Almaca J, Faria D, Sousa M et al (2013) High-content siRNA screen reveals global ENaC regulators and potential cystic fibrosis therapy targets. Cell 154:1390–1400CrossRefPubMed
Zurück zum Zitat Ashburn TT, Thor KB (2004) Drug repositioning: identifying and developing new uses for existing drugs. Nat Rev Drug Discov 3:673–683CrossRefPubMed Ashburn TT, Thor KB (2004) Drug repositioning: identifying and developing new uses for existing drugs. Nat Rev Drug Discov 3:673–683CrossRefPubMed
Zurück zum Zitat Banfi C, Baetta R, Gianazza E, Tremoli E (2017) Technological advances and proteomic applications in drug discovery and target deconvolution: identification of the pleiotropic effects of statins. Drug Discov Today doi:10.1016/j.drudis.2017.03.001 Banfi C, Baetta R, Gianazza E, Tremoli E (2017) Technological advances and proteomic applications in drug discovery and target deconvolution: identification of the pleiotropic effects of statins. Drug Discov Today doi:10.1016/j.drudis.2017.03.001
Zurück zum Zitat Bittker JA, Ross NT (2016) High throughput screening methods: evolution and refinement. Royal Society of Chemistry, UK Bittker JA, Ross NT (2016) High throughput screening methods: evolution and refinement. Royal Society of Chemistry, UK
Zurück zum Zitat Bray MA, Carpenter A, Imaging Platform, Broad Institute of MIT and Harvard (2004) Advanced assay development guidelines for image-based high content screening and analysis. In Sittampalam GS, Coussens NP, Brimacombe K, et al, eds. Assay guidance manual. Bethesda (MD): Eli Lilly & Company and the National Center for Advancing Translational Sciences. Bray MA, Carpenter A, Imaging Platform, Broad Institute of MIT and Harvard (2004) Advanced assay development guidelines for image-based high content screening and analysis. In Sittampalam GS, Coussens NP, Brimacombe K, et al, eds. Assay guidance manual. Bethesda (MD): Eli Lilly & Company and the National Center for Advancing Translational Sciences.
Zurück zum Zitat Buchser W, Collins M, Garyantes T, et al (2004) Assay development guidelines for image-based high content screening, high content analysis and high content imaging. In Sittampalam GS, Coussens NP, Brimacombe K, et al, eds. Assay guidance manual. Eli Lilly & Co and the National Center for Advancing Translational Sciences, Bethesda Buchser W, Collins M, Garyantes T, et al (2004) Assay development guidelines for image-based high content screening, high content analysis and high content imaging. In Sittampalam GS, Coussens NP, Brimacombe K, et al, eds. Assay guidance manual. Eli Lilly & Co and the National Center for Advancing Translational Sciences, Bethesda
Zurück zum Zitat Cappato S, Tonachini L, Giacopelli F et al (2016) High-throughput screening for modulators of ACVR1 transcription: discovery of potential therapeutics for fibrodysplasia ossificans progressiva. Dis Model Mech 9:685–696CrossRefPubMedPubMedCentral Cappato S, Tonachini L, Giacopelli F et al (2016) High-throughput screening for modulators of ACVR1 transcription: discovery of potential therapeutics for fibrodysplasia ossificans progressiva. Dis Model Mech 9:685–696CrossRefPubMedPubMedCentral
Zurück zum Zitat Cautain B, de Pedro N, Schulz C et al (2015) Identification of the Lipodepsipeptide MDN-0066, a novel inhibitor of VHL/HIF pathway produced by a new pseudomonas species. PLoS One 10:e0125221CrossRefPubMedPubMedCentral Cautain B, de Pedro N, Schulz C et al (2015) Identification of the Lipodepsipeptide MDN-0066, a novel inhibitor of VHL/HIF pathway produced by a new pseudomonas species. PLoS One 10:e0125221CrossRefPubMedPubMedCentral
Zurück zum Zitat Collins MA (2009) Generating ‘omic knowledge’: the role of informatics in high content screening. Comb Chem High Throughput Screen 12:917–925CrossRefPubMedPubMedCentral Collins MA (2009) Generating ‘omic knowledge’: the role of informatics in high content screening. Comb Chem High Throughput Screen 12:917–925CrossRefPubMedPubMedCentral
Zurück zum Zitat DiMasi JA, Grabowski HG, Hansen RW (2016) Innovation in the pharmaceutical industry: new estimates of R&D costs. J Health Econ 47:20–33CrossRefPubMed DiMasi JA, Grabowski HG, Hansen RW (2016) Innovation in the pharmaceutical industry: new estimates of R&D costs. J Health Econ 47:20–33CrossRefPubMed
Zurück zum Zitat Jung HJ, Kwon HJ (2015) Target deconvolution of bioactive small molecules: the heart of chemical biology and drug discovery. Arch Pharm Res 38:1627–1641CrossRefPubMed Jung HJ, Kwon HJ (2015) Target deconvolution of bioactive small molecules: the heart of chemical biology and drug discovery. Arch Pharm Res 38:1627–1641CrossRefPubMed
Zurück zum Zitat Kim JH, Scialli AR (2011) Thalidomide: the tragedy of birth defects and the effective treatment of disease. Toxicol Sci 122:1–6CrossRefPubMed Kim JH, Scialli AR (2011) Thalidomide: the tragedy of birth defects and the effective treatment of disease. Toxicol Sci 122:1–6CrossRefPubMed
Zurück zum Zitat Nijman SM (2015) Functional genomics to uncover drug mechanism of action. Nat Chem Biol 11:942–948CrossRefPubMed Nijman SM (2015) Functional genomics to uncover drug mechanism of action. Nat Chem Biol 11:942–948CrossRefPubMed
Zurück zum Zitat O’Brien PJ (2014) High-content analysis in toxicology: screening substances for human toxicity potential, elucidating subcellular mechanisms and in vivo use as translational safety biomarkers. Basic Clin Pharmacol Toxicol 115:4–17CrossRefPubMed O’Brien PJ (2014) High-content analysis in toxicology: screening substances for human toxicity potential, elucidating subcellular mechanisms and in vivo use as translational safety biomarkers. Basic Clin Pharmacol Toxicol 115:4–17CrossRefPubMed
Zurück zum Zitat Olson H, Betton G, Robinson D et al (2000) Concordance of the toxicity of pharmaceuticals in humans and in animals. Regul Toxicol Pharmacol 32:56–67CrossRefPubMed Olson H, Betton G, Robinson D et al (2000) Concordance of the toxicity of pharmaceuticals in humans and in animals. Regul Toxicol Pharmacol 32:56–67CrossRefPubMed
Zurück zum Zitat Paul SM, Mytelka DS, Dunwiddie CT, Persinger CC, Munos BH, Lindborg SR, Schacht AL (2010) How to improve R&D productivity: the pharmaceutical industry’s grand challenge. Nat Rev Drug Discov 9:203–214CrossRefPubMed Paul SM, Mytelka DS, Dunwiddie CT, Persinger CC, Munos BH, Lindborg SR, Schacht AL (2010) How to improve R&D productivity: the pharmaceutical industry’s grand challenge. Nat Rev Drug Discov 9:203–214CrossRefPubMed
Zurück zum Zitat Peravali R, Gehrig J, Giselbrecht S, Lutjohann DS, Hadzhiev Y, Muller F, Liebel U (2011) Automated feature detection and imaging for high-resolution screening of zebrafish embryos. BioTechniques 50:319–324PubMed Peravali R, Gehrig J, Giselbrecht S, Lutjohann DS, Hadzhiev Y, Muller F, Liebel U (2011) Automated feature detection and imaging for high-resolution screening of zebrafish embryos. BioTechniques 50:319–324PubMed
Zurück zum Zitat Rossi A, Anzalone A, Fortuna MC, Caro G, Garelli V, Pranteda G, Carlesimo M (2016) Multi-therapies in androgenetic alopecia: review and clinical experiences. Dermatol Ther 29:424–432CrossRefPubMed Rossi A, Anzalone A, Fortuna MC, Caro G, Garelli V, Pranteda G, Carlesimo M (2016) Multi-therapies in androgenetic alopecia: review and clinical experiences. Dermatol Ther 29:424–432CrossRefPubMed
Zurück zum Zitat Sams-Dodd F (2006) Drug discovery: selecting the optimal approach. Drug Discov Today 11:465–472CrossRefPubMed Sams-Dodd F (2006) Drug discovery: selecting the optimal approach. Drug Discov Today 11:465–472CrossRefPubMed
Zurück zum Zitat Sardana D, Zhu C, Zhang M, Gudivada RC, Yang L, Jegga AG (2011) Drug repositioning for orphan diseases. Brief Bioinform 12:346–356CrossRefPubMed Sardana D, Zhu C, Zhang M, Gudivada RC, Yang L, Jegga AG (2011) Drug repositioning for orphan diseases. Brief Bioinform 12:346–356CrossRefPubMed
Zurück zum Zitat Schulte J, Sepp KJ, Wu C, Hong P, Littleton JT (2011) High-content chemical and RNAi screens for suppressors of neurotoxicity in a Huntington’s disease model. PLoS One 6:e23841CrossRefPubMedPubMedCentral Schulte J, Sepp KJ, Wu C, Hong P, Littleton JT (2011) High-content chemical and RNAi screens for suppressors of neurotoxicity in a Huntington’s disease model. PLoS One 6:e23841CrossRefPubMedPubMedCentral
Zurück zum Zitat Szafran AT, Hartig S, Sun H et al (2009) Androgen receptor mutations associated with androgen insensitivity syndrome: a high content analysis approach leading to personalized medicine. PLoS One 4:e8179CrossRefPubMedPubMedCentral Szafran AT, Hartig S, Sun H et al (2009) Androgen receptor mutations associated with androgen insensitivity syndrome: a high content analysis approach leading to personalized medicine. PLoS One 4:e8179CrossRefPubMedPubMedCentral
Zurück zum Zitat Wermuth CG (2004) Selective optimization of side activities: another way for drug discovery. J Med Chem 47:1303–1314CrossRefPubMed Wermuth CG (2004) Selective optimization of side activities: another way for drug discovery. J Med Chem 47:1303–1314CrossRefPubMed
Zurück zum Zitat Ye F, Bauer JA, Pietenpol JA, Shyr Y (2012) Analysis of high-throughput RNAi screening data in identifying genes mediating sensitivity to chemotherapeutic drugs: statistical approaches and perspectives. BMC Genomics 13(Suppl 8):S3. doi:10.1186/1471-2164-13-S8-S3 Ye F, Bauer JA, Pietenpol JA, Shyr Y (2012) Analysis of high-throughput RNAi screening data in identifying genes mediating sensitivity to chemotherapeutic drugs: statistical approaches and perspectives. BMC Genomics 13(Suppl 8):S3. doi:10.1186/1471-2164-13-S8-S3
Zurück zum Zitat Zanella F, Lorens JB, Link W (2010) High content screening: seeing is believing. Trends Biotechnol 28:237–245CrossRefPubMed Zanella F, Lorens JB, Link W (2010) High content screening: seeing is believing. Trends Biotechnol 28:237–245CrossRefPubMed
Zurück zum Zitat Zhang XD (2011) Illustration of SSMD, z score, SSMD*, z* score, and t statistic for hit selection in RNAi high-throughput screens. J Biomol Screen 16:775–785CrossRefPubMed Zhang XD (2011) Illustration of SSMD, z score, SSMD*, z* score, and t statistic for hit selection in RNAi high-throughput screens. J Biomol Screen 16:775–785CrossRefPubMed
Metadaten
Titel
High-content drug screening for rare diseases
verfasst von
F. Bellomo
D. L. Medina
E. De Leo
A. Panarella
F. Emma
Publikationsdatum
07.06.2017
Verlag
Springer Netherlands
Erschienen in
Journal of Inherited Metabolic Disease / Ausgabe 4/2017
Print ISSN: 0141-8955
Elektronische ISSN: 1573-2665
DOI
https://doi.org/10.1007/s10545-017-0055-1

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