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Erschienen in: Breast Cancer Research 6/2006

01.12.2006 | Review

High-throughput genomic technology in research and clinical management of breast cancer. Plasma-based proteomics in early detection and therapy

verfasst von: Michael A Davis, Samir Hanash

Erschienen in: Breast Cancer Research | Ausgabe 6/2006

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Abstract

Protein-based breast cancer biomarkers are a promising resource for breast cancer detection at the earliest and most treatable stages of the disease. Plasma is well suited to proteomic-based methods of biomarker discovery because it is easily obtained, is routinely used in the diagnosis of many diseases, and has a rich proteome. However, due to the vast dynamic range in protein concentration and the often uncertain tissue and cellular origin of plasma proteins, proteomic analysis of plasma requires special consideration compared with tissue and cultured cells. This review briefly touches on the search for plasma-based protein biomarkers for the early detection and treatment of breast cancer.
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Literatur
2.
Zurück zum Zitat Anderson NL, Anderson NG: The human plasma proteome: history, character, and diagnostic prospects. Mol Cell Proteomics. 2002, 1: 845-867. 10.1074/mcp.R200007-MCP200.CrossRefPubMed Anderson NL, Anderson NG: The human plasma proteome: history, character, and diagnostic prospects. Mol Cell Proteomics. 2002, 1: 845-867. 10.1074/mcp.R200007-MCP200.CrossRefPubMed
3.
Zurück zum Zitat Barry MJ: Clinical practice. Prostate-specific-antigen testing for early diagnosis of prostate cancer. N Engl J Med. 2001, 344: 1373-1377. 10.1056/NEJM200105033441806.CrossRefPubMed Barry MJ: Clinical practice. Prostate-specific-antigen testing for early diagnosis of prostate cancer. N Engl J Med. 2001, 344: 1373-1377. 10.1056/NEJM200105033441806.CrossRefPubMed
4.
Zurück zum Zitat Rustin GJ, Bast RC, Kelloff GJ, Barrett JC, Carter SK, Nisen PD, Sigman CC, Parkinson DR, Ruddon RW: Use of CA-125 in clinical trial evaluation of new therapeutic drugs for ovarian cancer. Clin Cancer Res. 2004, 10: 3919-3926. 10.1158/1078-0432.CCR-03-0787.CrossRefPubMed Rustin GJ, Bast RC, Kelloff GJ, Barrett JC, Carter SK, Nisen PD, Sigman CC, Parkinson DR, Ruddon RW: Use of CA-125 in clinical trial evaluation of new therapeutic drugs for ovarian cancer. Clin Cancer Res. 2004, 10: 3919-3926. 10.1158/1078-0432.CCR-03-0787.CrossRefPubMed
5.
Zurück zum Zitat Srivastava S, Srivastava RG: Proteomics in the forefront of cancer biomarker discovery. J Proteome Res. 2005, 4: 1098-1103. 10.1021/pr050016u.CrossRefPubMed Srivastava S, Srivastava RG: Proteomics in the forefront of cancer biomarker discovery. J Proteome Res. 2005, 4: 1098-1103. 10.1021/pr050016u.CrossRefPubMed
6.
Zurück zum Zitat Gillette MA, Mani DR, Carr SA: Place of pattern in proteomic biomarker discovery. J Proteome Res. 2005, 4: 1143-1154. 10.1021/pr0500962.CrossRefPubMed Gillette MA, Mani DR, Carr SA: Place of pattern in proteomic biomarker discovery. J Proteome Res. 2005, 4: 1143-1154. 10.1021/pr0500962.CrossRefPubMed
7.
Zurück zum Zitat Mann M, Jensen ON: Proteomic analysis of post-translational modifications. Nat Biotechnol. 2003, 21: 255-261. 10.1038/nbt0303-255.CrossRefPubMed Mann M, Jensen ON: Proteomic analysis of post-translational modifications. Nat Biotechnol. 2003, 21: 255-261. 10.1038/nbt0303-255.CrossRefPubMed
8.
Zurück zum Zitat Zhang H, Li XJ, Martin DB, Aebersold R: Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. Nat Biotechnol. 2003, 21: 660-666. 10.1038/nbt827.CrossRefPubMed Zhang H, Li XJ, Martin DB, Aebersold R: Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. Nat Biotechnol. 2003, 21: 660-666. 10.1038/nbt827.CrossRefPubMed
9.
Zurück zum Zitat Misek DE, Kuick R, Wang H, Galchev V, Deng B, Zhao R, Tra J, Pisano MR, Amunugama R, Allen D, et al: A wide range of protein isoforms in serum and plasma uncovered by a quantitative intact protein analysis system. Proteomics. 2005, 5: 3343-3352. 10.1002/pmic.200500103.CrossRefPubMed Misek DE, Kuick R, Wang H, Galchev V, Deng B, Zhao R, Tra J, Pisano MR, Amunugama R, Allen D, et al: A wide range of protein isoforms in serum and plasma uncovered by a quantitative intact protein analysis system. Proteomics. 2005, 5: 3343-3352. 10.1002/pmic.200500103.CrossRefPubMed
10.
Zurück zum Zitat Wang H, Clouthier SG, Galchev V, Misek DE, Duffner U, Min CK, Zhao R, Tra J, Omenn GS, Ferrara JL, Hanash SM: Intact-protein-based high-resolution three-dimensional quantitative analysis system for proteome profiling of biological fluids. Mol Cell Proteomics. 2005, 4: 618-625. 10.1074/mcp.M400126-MCP200.CrossRefPubMed Wang H, Clouthier SG, Galchev V, Misek DE, Duffner U, Min CK, Zhao R, Tra J, Omenn GS, Ferrara JL, Hanash SM: Intact-protein-based high-resolution three-dimensional quantitative analysis system for proteome profiling of biological fluids. Mol Cell Proteomics. 2005, 4: 618-625. 10.1074/mcp.M400126-MCP200.CrossRefPubMed
11.
Zurück zum Zitat Celis JE, Moreira JM, Gromova I, Cabezon T, Ralfkiaer U, Guldberg P, Straten PT, Mouridsen H, Friis E, Holm D, et al: Towards discovery-driven translational research in breast cancer. FEBS J. 2005, 272: 2-15. 10.1111/j.1432-1033.2004.04418.x.CrossRefPubMed Celis JE, Moreira JM, Gromova I, Cabezon T, Ralfkiaer U, Guldberg P, Straten PT, Mouridsen H, Friis E, Holm D, et al: Towards discovery-driven translational research in breast cancer. FEBS J. 2005, 272: 2-15. 10.1111/j.1432-1033.2004.04418.x.CrossRefPubMed
12.
Zurück zum Zitat Celis JE, Gromov P, Cabezon T, Moreira JM, Ambartsumian N, Sandelin K, Rank F, Gromova I: Proteomic characterization of the interstitial fluid perfusing the breast tumor microenvironment: a novel resource for biomarker and therapeutic target discovery. Mol Cell Proteomics. 2004, 3: 327-344. 10.1074/mcp.M400009-MCP200.CrossRefPubMed Celis JE, Gromov P, Cabezon T, Moreira JM, Ambartsumian N, Sandelin K, Rank F, Gromova I: Proteomic characterization of the interstitial fluid perfusing the breast tumor microenvironment: a novel resource for biomarker and therapeutic target discovery. Mol Cell Proteomics. 2004, 3: 327-344. 10.1074/mcp.M400009-MCP200.CrossRefPubMed
13.
Zurück zum Zitat Birchmeier C, Birchmeier W, Brand-Saberi B: Epithelial-mesenchymal transitions in cancer progression. Acta Anat (Basel). 1996, 156: 217-226.CrossRef Birchmeier C, Birchmeier W, Brand-Saberi B: Epithelial-mesenchymal transitions in cancer progression. Acta Anat (Basel). 1996, 156: 217-226.CrossRef
14.
Zurück zum Zitat Birgersdotter A, Sandberg R, Ernberg I: Gene expression perturbation in vitro – a growing case for three-dimensional (3D) culture systems. Semin Cancer Biol. 2005, 15: 405-412. 10.1016/j.semcancer.2005.06.009.CrossRefPubMed Birgersdotter A, Sandberg R, Ernberg I: Gene expression perturbation in vitro – a growing case for three-dimensional (3D) culture systems. Semin Cancer Biol. 2005, 15: 405-412. 10.1016/j.semcancer.2005.06.009.CrossRefPubMed
15.
Zurück zum Zitat Emmert-Buck MR, Bonner RF, Smith PD, Chuaqui RF, Zhuang Z, Goldstein SR, Weiss RA, Liotta LA: Laser capture microdissection. Science. 1996, 274: 998-1001. 10.1126/science.274.5289.998.CrossRefPubMed Emmert-Buck MR, Bonner RF, Smith PD, Chuaqui RF, Zhuang Z, Goldstein SR, Weiss RA, Liotta LA: Laser capture microdissection. Science. 1996, 274: 998-1001. 10.1126/science.274.5289.998.CrossRefPubMed
16.
Zurück zum Zitat Caldwell RL, Caprioli RM: Tissue profiling by mass spectrometry: a review of methodology and applications. Mol Cell Proteomics. 2005, 4: 394-401. 10.1074/mcp.R500006-MCP200.CrossRefPubMed Caldwell RL, Caprioli RM: Tissue profiling by mass spectrometry: a review of methodology and applications. Mol Cell Proteomics. 2005, 4: 394-401. 10.1074/mcp.R500006-MCP200.CrossRefPubMed
17.
Zurück zum Zitat Chaurand P, Schwartz SA, Reyzer ML, Caprioli RM: Imaging mass spectrometry: principles and potentials. Toxicol Pathol. 2005, 33: 92-101. 10.1080/01926230590881862.CrossRefPubMed Chaurand P, Schwartz SA, Reyzer ML, Caprioli RM: Imaging mass spectrometry: principles and potentials. Toxicol Pathol. 2005, 33: 92-101. 10.1080/01926230590881862.CrossRefPubMed
Metadaten
Titel
High-throughput genomic technology in research and clinical management of breast cancer. Plasma-based proteomics in early detection and therapy
verfasst von
Michael A Davis
Samir Hanash
Publikationsdatum
01.12.2006
Verlag
BioMed Central
Erschienen in
Breast Cancer Research / Ausgabe 6/2006
Elektronische ISSN: 1465-542X
DOI
https://doi.org/10.1186/bcr1619

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