nach oben

Archives of Virology

Erschienen in:

05.01.2016 | Brief Report

Identification and in silico characterisation of defective molecules associated with isolates of banana bunchy top virus

verfasst von: Daisy Stainton, Darren P. Martin, David A. Collings, John E. Thomas, Arvind Varsani

Erschienen in: Archives of Virology | Ausgabe 4/2016

Einloggen, um Zugang zu erhalten

Abstract

Banana bunchy top virus (BBTV) is a multi-component single-stranded DNA virus. From 267 potentially infected Musa plants, 24 apparently ‘defective’ BBTV components have been identified. Interestingly, 23/24 of these defective molecules were apparently derived from DNA-R. All of the identified defective molecules had retained at least part of the CR-SL and CR-M but had insertions and/or deletions that in most cases resulted in open reading frame disruptions. Our detection of three monophyletic but diverse (and therefore likely circulating) defective DNA-R lineages suggests that, in many cases, defective DNA-R molecules might remain associated with BBTV genomes for prolonged periods.

Nur mit Berechtigung zugänglich

Aronson MN, Meyer AD, Györgyey J, Katul L, Vetten HJ, Gronenborn B, Timchenko T (2000) Clink, a nanovirus-encoded protein, binds both pRB and SKP1. J Virol 74:2967–2972CrossRefPubMedPubMedCentral

Bach J, Jeske H (2014) Defective DNAs of beet curly top virus from long-term survivor sugar beet plants. Virus Res 183:89–94CrossRefPubMed

Bell KE, Dale JL, Ha CV, Vu MT, Revill PA (2002) Characterisation of Rep-encoding components associated with banana bunchy top nanovirus in Vietnam. Arch Virol 147:695–707CrossRefPubMed

Burns TM, Harding RM, Dale JL (1995) The genome organisation of banana bunchy top virus: analysis of six ssDNA components. J Gen Virol 76:1471–1482CrossRefPubMed

Casado CG, Javier Ortiz G, Padron E, Bean SJ, McKenna R, Agbandje-McKenna M, Boulton MI (2004) Isolation and characterization of subgenomic DNAs encapsidated in “single” T = 1 isometric particles of Maize streak virus. Virology 323:164–171CrossRefPubMed

Dale JL (1987) Banana bunchy top—an economically important tropical plant-virus disease. Adv Virus Res 33:301–325CrossRefPubMed

Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792–1797CrossRefPubMedPubMedCentral

Frischmuth T, Stanley J (1992) Characterization of beet curly top virus subgenomic DNA localizes sequences required for replication. Virology 189:808–811CrossRefPubMed

Fu HC, Hu JM, Hung TH, Su HJ, Yeh HH (2009) Unusual events involved in banana bunchy top virus strain evolution. Phytopathology 99:812–822CrossRefPubMed

10.

Hadfield J, Thomas JE, Schwinghamer MW, Kraberger S, Stainton D, Dayaram A, Parry JN, Pande D, Martin DP, Varsani A (2012) Molecular characterisation of dicot-infecting mastreviruses from Australia. Virus Res 166:13–22CrossRefPubMed

11.

Hafner GJ, Harding RM, Dale JL (1995) Movement and transmission of banana bunchy top virus DNA component one in bananas. J Gen Virol 76:2279–2285CrossRefPubMed

12.

Hafner GJ, Harding RM, Dale JL (1997) A DNA primer associated with banana bunchy top virus. J Gen Virol 78:479–486CrossRefPubMed

13.

Hafner GJ, Stafford MR, Wolter LC, Harding RM, Dale JL (1997) Nicking and joining activity of banana bunchy top virus replication protein in vitro. J Gen Virol 78:1795–1799CrossRefPubMed

14.

Harding RM, Burns TM, Dale JL (1991) Virus-like particles associated with banana bunchy top disease contain small single-stranded DNA. J Gen Virol 72:225–230CrossRefPubMed

15.

Herrera-Valencia VA, Dugdale B, Harding RM, Dale JL (2006) An iterated sequence in the genome of banana bunchy top virus is essential for efficient replication. J Gen Virol 87:3409–3412CrossRefPubMed

16.

Horn J, Lauster S, Krenz B, Kraus J, Frischmuth T, Jeske H (2011) Ambivalent effects of defective DNA in beet curly top virus-infected transgenic sugarbeet plants. Virus Res 158:169–178CrossRefPubMed

17.

Horser CL, Karan M, Harding RM, Dale JL (2001) Additional Rep-encoding DNAs associated with banana bunchy top virus. Arch Virol 146:71–86CrossRefPubMed

18.

Idris AM, Shahid MS, Briddon RW, Khan AJ, Zhu JK, Brown JK (2011) An unusual alphasatellite associated with monopartite begomoviruses attenuates symptoms and reduces betasatellite accumulation. J Gen Virol 92:706–717CrossRefPubMed

19.

Liu Y, Robinson DJ, Harrison BD (1998) Defective forms of cotton leaf curl virus DNA-A that have different combinations of sequence deletion, duplication, inversion and rearrangement. J Gen Virol 79:1501–1508CrossRefPubMed

20.

Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26:2462–2463CrossRefPubMedPubMedCentral

21.

Martin DP, Murrell B, Golden M, Khoosal A, Muhire B (2015) RDP4: Detection and analysis of recombination patterns in virus genomes. Virus Evol. doi:10.1093/ve/vev003

22.

Ndunguru J, Legg JP, Fofana IBF, Aveling TAS, Thompson G, Fauquet CM (2006) Identification of a defective molecule derived from DNA-A of the bipartite begomovirus of East African cassava mosaic virus. Plant Pathol 55:2–10CrossRef

23.

Paprotka T, Boiteux LS, Fonseca MEN, Resende RO, Jeske H, Faria JC, Ribeiro SG (2010) Genomic diversity of sweet potato geminiviruses in a Brazilian germplasm bank. Virus Res 149:224–233CrossRefPubMed

24.

Patil BL, Dasgupta I (2006) Defective interfering DNAs of plant viruses. Crit Rev Plant Sci 25:47–64CrossRef

25.

Patil BL, Dutt N, Briddon RW, Bull SE, Rothenstein D, Borah BK, Dasgupta I, Stanley J, Jeske H (2007) Deletion and recombination events between the DNA-A and DNA-B components of Indian cassava-infecting geminiviruses generate defective molecules in Nicotiana benthamiana. Virus Res 124:59–67CrossRefPubMed

26.

Rey MEC, Ndunguru J, Berrie LC, Paximadis M, Berry S, Cossa N, Nuaila VN, Mabasa KG, Abraham N, Rybicki EP, Martin D, Pietersen G, Esterhuizen LL (2012) Diversity of dicotyledenous-infecting geminiviruses and their associated DNA molecules in Southern Africa, including the South-west Indian Ocean Islands. Viruses 4:1753–1791CrossRefPubMedPubMedCentral

27.

Rybicki EP, Pietersen G (1999) Plant virus disease problems in the developing world. Adv Virus Res 53:127–175CrossRefPubMed

28.

Rybicki EP (2015) A Top Ten list for economically important plant viruses. Arch Virol 160:17–20CrossRefPubMed

29.

Schubert J, Habekuß A, Wu B, Thieme T, Wang X (2014) Analysis of complete genomes of isolates of the Wheat dwarf virus from new geographical locations and descriptions of their defective forms. Virus Genes 48:133–139CrossRefPubMed

30.

Stainton D, Kraberger S, Walters M, Wiltshire EJ, Rosario K, Halafihi M, Lolohea S, Katoa I, Faitua TH, Aholelei W, Taufa L, Thomas JE, Collings DA, Martin DP, Varsani A (2012) Evidence of inter-component recombination, intra-component recombination and reassortment in banana bunchy top virus. J Gen Virol 93:1103–1119CrossRefPubMed

31.

Stainton D, Martin D, Muhire B, Lolohea S, Halafihi M, Lepoint P, Blomme G, Crew KS, Sharman M, Kraberger S, Dayaram A, Walters M, Collings DA, Mabvakure B, Lemey P, Harkins G, Thomas JE, Varsani A (2015) The global distribution of Banana bunchy top virus reveals little evidence for frequent recent, human-mediated long distance dispersal events. Virus Evol. doi:10.1093/ve/vev009

32.

Stamatakis A (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30:1312–1313CrossRefPubMedPubMedCentral

33.

Stanley J, Townsend R (1985) Characterisation of DNA forms associated with cassava latent virus infection. Nucleic Acids Res 13:2189–2206CrossRefPubMedPubMedCentral

34.

Stanley J, Frischmuth T, Ellwood S (1990) Defective viral DNA ameliorates symptoms of geminivirus infection in transgenic plants. Proc Natl Acad Sci USA 87:6291–6295CrossRefPubMedPubMedCentral

35.

Stanley J, Saunders K, Pinner MS, Wong SM (1997) Novel defective interfering DNAs associated with ageratum yellow vein geminivirus infection of Ageratum conyzoides. Virology 239:87–96CrossRefPubMed

36.

Stenger DC, Stevenson MC, Hormuzdi SG, Bisaro DM (1992) A number of subgenomic DNAs are produced following agroinoculation of plants with beet curly top virus. J Gen Virol 73:237–242CrossRefPubMed

37.

Su HJ, Tsao LY, Wu ML, Hung TH (2003) Biological and molecular categorization of strains of Banana bunchy top virus. J Phytopathol 151:290–296CrossRef

38.

Thomas JE, Dietzgen RG (1991) Purification, characterization and serological detection of virus-like particles associated with banana bunchy top disease in Australia. J Gen Virol 72:217–224CrossRefPubMed

39.

van der Walt E, Rybicki EP, Varsani A, Polston JE, Billharz R, Donaldson L, Monjane AL, Martin DP (2009) Rapid host adaptation by extensive recombination. J Gen Virol 90:734–746CrossRefPubMedPubMedCentral

40.

Wanitchakorn R, Hafner GJ, Harding RM, Dale JL (2000) Functional analysis of proteins encoded by banana bunchy top virus DNA-4 to -6. J Gen Virol 81:299–306CrossRefPubMed

41.

Wanitchakorn R, Harding RM, Dale JL (2000) Sequence variability in the coat protein gene of two groups of banana bunchy top isolates. Arch Virol 145:593–602CrossRefPubMed

42.

Wu R-Y, You L-R, Soong T-S (1994) Nucleotide sequences of two circular single-stranded DNAs associated with banana bunchy top virus. Phytopathology 84:952–957CrossRef

43.

Yu NT, Zhang YL, Feng TC, Wang JH, Kulye M, Yang WJ, Lin ZS, Xiong Z, Liu ZX (2012) Cloning and sequence analysis of two banana bunchy top virus genomes in Hainan. Virus Genes 44:488–494CrossRefPubMed

44.

Zaffalon V, Mukherjee SK, Reddy VS, Thompson JR, Tepfer M (2012) A survey of geminiviruses and associated satellite DNAs in the cotton-growing areas of northwestern India. Arch Virol 157:483–495CrossRefPubMed

45.

Zhou XP, Xie Y, Zhang ZK, Qi YJ, Wu JJ (2001) Molecular characterization of a novel defective DNA isolated from tobacco tissues infected with tobacco leaf curl virus. Acta Virol 45:45–50PubMed

Titel: Identification and in silico characterisation of defective molecules associated with isolates of banana bunchy top virus
verfasst von: Daisy Stainton
Darren P. Martin
David A. Collings
John E. Thomas
Arvind Varsani
Publikationsdatum: 05.01.2016
Verlag: Springer Vienna
Erschienen in: Archives of Virology / Ausgabe 4/2016
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-015-2736-0

Leitlinien kompakt für die Innere Medizin

Mit medbee Pocketcards sicher entscheiden.

^{Seit 2022 gehört die medbee GmbH zum Springer Medizin Verlag}

Kostenlos registrieren

Neu im Fachgebiet Innere Medizin

23.04.2024 | Ablationstherapie | Nachrichten

Update Innere Medizin

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.

Newsletter bestellen

Live-Webinar: Aktuelle Leitlinien bei Herz-Kreislauf-Erkrankungen

Springer Medizin

Identification and in silico characterisation of defective molecules associated with isolates of banana bunchy top virus

Abstract

Leitlinien kompakt für die Innere Medizin

Neu im Fachgebiet Innere Medizin

Wie erfolgreich ist eine Re-Ablation nach Rezidiv?

Europäische Ernährungsgewohnheiten: Das sind die häufigsten Fehler

Hinter dieser Appendizitis steckte ein Erreger

Demenzkranke durch Antipsychotika vielfach gefährdet

Update Innere Medizin

Live-Webinar: Aktuelle Leitlinien bei Herz-Kreislauf-Erkrankungen

Springer Medizin

Abstract

Bitte loggen Sie sich ein, um Zugang zu diesem Inhalt zu erhalten

Weitere Artikel der Ausgabe 4/2016

Detection and genetic characterization of a novel parvovirus distantly related to human bufavirus in domestic pigs

An outbreak of encephalitis associated with echovirus 19 in Uttar Pradesh, India, in 2011

Characterization of a novel negevirus isolated from Aedes larvae collected in a subarctic region of Japan

A lack of Fas/FasL signalling leads to disturbances in the antiviral response during ectromelia virus infection

The fecal virome of South and Central American children with diarrhea includes small circular DNA viral genomes of unknown origin

Rapid and sensitive detection of canine parvovirus type 2 by recombinase polymerase amplification

Leitlinien kompakt für die Innere Medizin

Neu im Fachgebiet Innere Medizin

Wie erfolgreich ist eine Re-Ablation nach Rezidiv?

Europäische Ernährungsgewohnheiten: Das sind die häufigsten Fehler

Hinter dieser Appendizitis steckte ein Erreger

Demenzkranke durch Antipsychotika vielfach gefährdet

Update Innere Medizin