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04.04.2018 | Brief Report

Identification and molecular characterization of a novel varicosa-like virus from red clover

verfasst von: Igor Koloniuk, Jana Fránová, Tatiana Sarkisova, Jaroslava Přibylová, Ondřej Lenz, Karel Petrzik, Josef Špak

Erschienen in: Archives of Virology | Ausgabe 8/2018

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Abstract

During aetiological study of diseased red clover (Trifolium pratense L.) using high throughput sequencing, a novel virus with a 10 kb genome divided into two segments was discovered. The virus, tentatively named red clover associated varicosavirus (RCaVV), is phylogenetically related to classifiable members of the genus Varicosavirus (family Rhabdoviridae, order Mononegavirales). Analysis of mRNA levels from the individual RCaVV genes suggested possible differences in transcription regulation between rhabdoviruses with divided and undivided genomes.

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Dietzgen RG, Kondo H, Goodin MM et al (2017) The family Rhabdoviridae: mono- and bipartite negative-sense RNA viruses with diverse genome organization and common evolutionary origins. Virus Res 227:158–170. https://doi.org/10.1016/j.virusres.2016.10.010 CrossRefPubMed

Rhabdoviridae. In: The Online (10th) Report of the International Committee on Taxonomy of Viruses. https://talk.ictvonline.org/ictv-reports/ictv_online_report/. Accessed 27 Feb 2018

Sasaya T, Kusaba S, Ishikawa K, Koganezawa H (2004) Nucleotide sequence of RNA2 of Lettuce big-vein virus and evidence for a possible transcription termination/initiation strategy similar to that of rhabdoviruses. J Gen Virol 85:2709–2717. https://doi.org/10.1099/vir.0.80061-0 CrossRefPubMed

Sabbadin F, Glover R, Stafford R et al (2017) Transcriptome sequencing identifies novel persistent viruses in herbicide resistant wild-grasses. Sci Rep 7:1–8. https://doi.org/10.1038/srep41987 CrossRef

Reddy PP (2016) Sustainable intensification of crop production. Springer, SingaporeCrossRef

Brunt AA, Crabtree K, Dallwitz MJ, et al (1996) Plant viruses online: descriptions and lists from the VIDE database. Version: 16th January 1997. In: http://sdb.im.ac.cn/vide/. Accessed 18 Sep 2017

Fránová J, Paltrinieri S, Botti S et al (2004) Association of phytoplasmas and viruses with malformed clovers. Folia Microbiol (Praha) 49:617–624. https://doi.org/10.1007/BF02931544 CrossRef

Fránová J, Jakešová H (2012) First report of bacilliform badnavirus-like virus particles in red clover. J Phytopathol 160:588–590. https://doi.org/10.1111/j.1439-0434.2012.01938.x CrossRef

Fránová J, Jakešová H (2014) Susceptibility of ten red clover (Trifolium pratense) cultivars to six viruses after artificial inoculation. Plant Prot Sci 50:113–118CrossRef

10.

Lamichhane JR, Venturi V (2015) Synergisms between microbial pathogens in plant disease complexes: a growing trend. Front Plant Sci. https://doi.org/10.3389/fpls.2015.00385 PubMedPubMedCentralCrossRef

11.

Fránová Honetšlegrová J, Vibio M, Bertaccini A (1996) Electron microscopy and molecular identification of phytoplasmas associated with strawberry green petals in the Czech Republic. Eur J Plant Pathol 102:831–835. https://doi.org/10.1007/BF01877052 CrossRef

12.

Morris TJ, Dodds JA (1979) Isolation and analysis of double-stranded RNA from virus-infected plant and fungal tissue. Phytopathology 69:854–858CrossRef

13.

Kumar S, Stecher G, Tamura K (2016) MEGA7: Molecular evolutionary genetics analysis Version 7.0 for bigger datasets. Mol Biol Evol 33:1870–1874. https://doi.org/10.1093/molbev/msw054 CrossRefPubMed

14.

Sigrist CJA, de Castro E, Cerutti L et al (2012) New and continuing developments at PROSITE. Nucleic Acids Res 41:D344–D347. https://doi.org/10.1093/nar/gks1067 CrossRefPubMedPubMedCentral

15.

Marchler-Bauer A, Bo Y, Han L et al (2017) CDD/SPARCLE: functional classification of proteins via subfamily domain architectures. Nucleic Acids Res 45:D200–D203. https://doi.org/10.1093/nar/gkw1129 CrossRefPubMed

16.

Camacho C, Coulouris G, Avagyan V et al (2009) BLAST+: architecture and applications. BMC Bioinformatics 10:421. https://doi.org/10.1186/1471-2105-10-421 CrossRefPubMedPubMedCentral

17.

Paez-Espino D, Eloe-Fadrosh EA, Pavlopoulos GA et al (2016) Uncovering Earth’s virome. Nature 536:425–430. https://doi.org/10.1038/nature19094 CrossRefPubMed

18.

Zhao G, Wu G, Lim ES et al (2017) VirusSeeker, a computational pipeline for virus discovery and virome composition analysis. Virology 503:21–30. https://doi.org/10.1016/j.virol.2017.01.005 CrossRefPubMedPubMedCentral

19.

Syller J (2011) Facilitative and antagonistic interactions between plant viruses in mixed infections. Mol Plant Pathol 13:204–216. https://doi.org/10.1111/j.1364-3703.2011.00734.x CrossRefPubMed

20.

Syller J, Grupa A (2015) Antagonistic within-host interactions between plant viruses: molecular basis and impact on viral and host fitness. Mol Plant Pathol 17:769–782. https://doi.org/10.1111/mpp.12322 CrossRefPubMed

21.

Kuwata S, Kubo S (1986) Tobacco stunt virus. In: CMI/AAB descriptions of plant viruses. p 4

22.

Walsh JA, Verbeek M (2012) Varicosavirus. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy. Elsevier, pp 777–781

23.

Lyles DS, Kuzmin IV, Rupprecht CE (2013) Rhabdoviridae. Fields virology: Sixth Edition 1:

24.

Conzelmann K-K (1998) Nonsegmented negative-stranD RNA viruses: genetics and manipulation of viral genomes. Annu Rev Genet 32:123–162. https://doi.org/10.1146/annurev.genet.32.1.123 CrossRefPubMed

25.

Kondo H, Maruyama K, Chiba S et al (2014) Transcriptional mapping of the messenger and leader RNAs of orchid fleck virus, a bisegmented negative-strand RNA virus. Virology 452–453:166–174. https://doi.org/10.1016/j.virol.2014.01.007 CrossRefPubMed

Titel: Identification and molecular characterization of a novel varicosa-like virus from red clover
verfasst von: Igor Koloniuk
Jana Fránová
Tatiana Sarkisova
Jaroslava Přibylová
Ondřej Lenz
Karel Petrzik
Josef Špak
Publikationsdatum: 04.04.2018
Verlag: Springer Vienna
Erschienen in: Archives of Virology / Ausgabe 8/2018
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-018-3838-2

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Identification and molecular characterization of a novel varicosa-like virus from red clover

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