nach oben

Archives of Virology

Erschienen in:

09.05.2020 | Brief Report

Identification of a novel bocaparvovirus in a wild squirrel in Kunming, Yunnan Province, China

verfasst von: Jiali Wang, Nan Li, Zhao Li, Lin Liu, Yuwen He, Jinxin Meng, Shunxiang Li, Jinglin Wang

Erschienen in: Archives of Virology | Ausgabe 6/2020

Einloggen, um Zugang zu erhalten

Abstract

In December 2017, a squirrel (Callosciurus phayrei) died 2 days after capture in Kunming, and its intestinal tract, heart, liver, spleen, lung, and kidney were subjected to metagenomics analysis. Reassembly and verification by reverse transcription PCR of contigs generated by next-generation sequencing yielded a 5176-nt sequence, which was designated "squirrel bocaparvovirus" (SQBOV). Phylogenetic trees based on the aa sequences of NS1, NP1, and VP1 showed that SQBOV formed an independent branch in the bocaparvovirus phylogenetic tree. The amino acid sequence identity of the NS1 of SQBOV to those of other bocaparvoviruses was below the threshold of 85% that is used to demarcate species within the genus, indicating that it should be considered a member of a new bocaparvovirus species. To our knowledge, this is the first report of a bocaparvovirus in squirrels. Our findings will enable further studies of viral diversity in rodents and of the genetic diversity and host range of bocaparvoviruses.

Manteufel J, Truyen U (2008) Animal bocaviruses: a brief review. Intervirology 51:328–334CrossRef

Jartti T, Hedman K, Jartti L, Ruuskanen O, Allander T, Söderlund VM (2012) Human bocavirus the first 5 years. Rev Med Virol 22:46–64CrossRef

Mochizuki M, Hashimoto M, Hajima T (2002) Virologic and serologic identification of minute virus of canines canine parvovirus type 1 from dogs in Japan. J Clin Microbiol 40(11):3993–3998CrossRef

Sloots TP, McErlean P, Speicher DJ, Arden KE, Nissen MD, Mackay IM (2006) Evidence of human coronavirus HKU1 and human bocavirus in Australian children. J Clin Virol 35(1):99–102CrossRef

Söderlund-Venermo M, Lahtinen A, Jartti T, Hedman L, Kemppainen K, Lehtinen P, Allander T, Ruuskanen O, Hedman K (2009) Clinical assessment and improved diagnosis of bocavirus-induced wheezing in children. Finland Emerg Infect Dis 15(9):1423–1430CrossRef

Cheng W, Li J, Huang C, Yao D, Liu N, Cui S, Jin Y, Duan Z (2010) Identification and nearly full-length genome characterization of novel porcine bocaviruses. PLoS ONE 5:e13583CrossRef

Yang S, Wang Y, Li W, Fan Z, Jiang L, Lin Y, Fu X, Shen Q, Sun Z, Wang X, Deng X, Zhang W, Delwart E (2016) A novel bocavirus from domestic mink, China. Virus Genes 52:887–890CrossRef

Li L, Shan T, Wang C, Cote C, Kolman J, Onions D, Gulland FMD, Delwart E (2011) The fecal viral flora of California sea lions. J Virol 85:9909–9917CrossRef

Lau SKP, Woo PCY, Yeung HC, Teng JLL, Wu Y, Bai R, Fan RYY, Chan KH, Yuen KY (2012) Identification and characterization of bocaviruses in cats and dogs reveals a novel feline bocavirus and a novel genetic group of canine bocavirus. J Gen Virol 93:1573–1582CrossRef

10.

Kapoor A, Slikas E, Simmonds P, Chieochansin T, Naeem A, Shaukat S, Alam MM, Sharif S, Angez M, Zaidi S, Delwart E (2009) A newly identified bocavirus species in human stool. J Infect Dis 199:196–200CrossRef

11.

Lanave G, Martella V, Farkas SL, Marton S, Fehér E, Bodnar L, Lavazza A, Decaro N, Buonavoglia C, Bányai K (2015) Novel bocaparvoviruses in rabbits. Vet J 206:131–135CrossRef

12.

He B, Li Z, Yang F, Zheng J, Feng Y, Guo H, Li Y, Wang Y, Su N, Zhang F, Fan Q, Tu C (2013) Virome profiling of bats from Myanmar by metagenomic analysis of tissue samples reveals more novel Mammalian viruses. PLoS ONE 8(4):e61950CrossRef

13.

Ao Y, Li X, Li L, Xie X, Jin D, Yu J, Lu S, Duan Z (2017) Two novel bocaparvovirus species identified in wild Himalayan marmots. Sci China Life Sci 60(12):1348–1356CrossRef

14.

Zhang C, Song F, Xiu L, Liu Y, Yang J, Yao L, Peng J (2018) Identification and characterization of a novel rodent bocavirus from different rodent species in China. Emerg Microbes Infect 7(1):48PubMedPubMedCentral

15.

Li XY, Ga C, Xia LL, Zhou WG, Xu L, Yu J, Qiu W, Zhang FQ, Fan QS, Tu CC, Hu TS, He B (2016) Detection and identification of a new bat bocavirus species in Yunnan. Mil Med Sc 40(3):207–213 (In Chinese)

16.

Wu Z, Ren X, Yang L, Hu Y, Yang J, He G, Zhang J, Dong J, Sun L, Du J, Liu L, Xue Y, Wang J, Yang F, Zhang S, Jin Q (2012) Virome analysis for identification of novel mammalian viruses in bat species from Chinese provinces. J Virol 86(20):10999–11012CrossRef

17.

Wu Z, Yang L, Ren X, He G, Zhang J, Yang J, Qian Z, Dong J, Sun L, Zhu Y, Du J, Yang F, Zhang S, Jin Q (2016) Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases. ISME J 10(3):609–620CrossRef

18.

Lau SKP, Ahmed SS, Tsoi HW, Yeung HC, Li KSM, Fan RYY, Zhao PSH, Lau CCC, Lam CSF, Choi KKF, Chan BCH, Cai JP, Wong SSY, Chen H, Zhang HL, Zhang L, Wang M, Woo PCY, Yuen KY (2017) Bats host diverse parvoviruses as possible origin of mammalian dependoparvoviruses and source for bat-swine interspecies transmission. J Gen Virol 98(12):3046–3059CrossRef

19.

Lau SKP, Ahmed SS, Yeung HC, Li KSM, Fan RYY, Cheng TYC, Cai JP, Wang M, Zheng BJ, Wong SSY, Woo PCY, Yuen KY (2016) Identification and interspecies transmission of a novel bocaparvovirus among different bat species in China. J Gen Virol 97(12):3345–3358CrossRef

20.

Meerburg BG, Singleton GR, Kijlstra A (2009) Rodent-borne diseases and their risks for public health. Crit Rev Microbiol 35(3):221–270CrossRef

21.

Li L, Cotmore SF, Tattersall P (2013) Parvoviral left-end hairpin ears are essential during infection for establishing a functional intranuclear transcription template and for efficient progeny genome encapsidation. J Virol 87:10501–10514CrossRef

22.

Huang Q, Deng X, Yan Z, Cheng F, Luo Y, Shen W, Lei-Butters DC, Chen AY, Li Y, Tang L, Söderlund-Venermo M, Engelhardt JF, Qiu J (2012) Establishment of a reverse genetics system for studying human bocavirus in human airway epithelia. PLoS Pathog 8:e1002899CrossRef

23.

Koonin EV, Ilyina TV (1993) Computer-assisted dissection of rolling circle DNA replication. Biosystems 30:241–268CrossRef

24.

Ilyina TV, Koonin EV (1992) Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria. Nucleic Acids Res 20:3279–3285CrossRef

25.

Walker JE, Saraste M, Runswick MJ, Gay NJ (1982) Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J 1:945–951CrossRef

26.

Suikkanen S, Antila M, Jaatinen A, Vihinen-Ranta M, Vuento M (2003) Release of canine parvovirus from endocytic vesicles. Virology 316:267–280CrossRef

27.

Qu XW, Liu WP, Qi ZY, Duan ZJ, Zheng LS, Kuang ZZ, Zhang WJ, Hou YD (2008) Phospholipase A2-like activity of human bocavirus VP1 unique region. Biochem Biophys Res Commun 365:158–163CrossRef

28.

Phan TG, Kapusinszky B, Wang C, Rose RK, Lipton HL, Delwart EL (2011) The fecal viral flora of wild rodents. PLoS Pathog 7(9):e1002218CrossRef

29.

Tijssen P, Agbandje-McKenna M, Almendral JM, Bergoin M, Flegel TW, Hedman K, Kleinschmidt J, Li Y, Pintel DJ, Tattersall P (2011) The family Parvoviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy—Ninth Report of the International Committee on Taxonomy of Viruses. Elsevier, London, pp 405–425

30.

Cotmore SF, Agbandje-McKenna M, Chiorini JA, Gatherer D, Mukha DV, Pintel DJ, Qiu J, Soderlund-Venermo M, Tattersall P, Tijssen P (2013) Rationalization and extension of the taxonomy of the family Parvoviridae. In ICTV official taxonomy: Updates since the 8th Report, code 2013.001a-aaaV.International Committee on Taxonomy of Viruses (ICTV). https://www.Ictvonline.org/virusTaxonomy.asp

31.

Mori D, Ranawaka U, Yamada K, Rajindrajith S, Miya K, Perera HK, Matsumoto T, Dassanayake M, Mitui MT, Mori H, Nishizono A, Söderlund-Venermo M, Ahmed K (2013) Human bocavirus in patients with encephalitis, Sri Lanka, 2009–2010. Emerg Infect Dis 19(11):1859–1862CrossRef

32.

Li L, Pesavento PA, Leutenegger CM, Estrada M, Coffey LL, Naccache SN, Samayoa S, Chiu C, Qiu JM, Wang CL, Deng XT, Delwart E (2013) A novel bocavirus in canine liver. Virol J 10(1):1–4CrossRef

33.

Zhao AJ, Ding YF, Liu P (2019) Research progress of swine bocavirus and its infection. Bull Biol 54(1):1–3 (In Chinese)

34.

Hoelzer K, Parrish CR (2010) The emergence of parvoviruses of carnivores. Vet Res 41:39CrossRef

35.

Hoelzer K, Shackelton LA, Parrish CR, Holmes EC (2008) Phylogenetic analysis reveals the emergence, evolution and dispersal of carnivore parvoviruses. J Gen Virol 89:2280–2289CrossRef

36.

Tompkins DM, Carver S, Jones ME, Krkošek M, Skerratt LF (2015) Emerging infectious diseases of wildlife: a critical perspective. Trends Parasitol 31:149–159CrossRef

Titel: Identification of a novel bocaparvovirus in a wild squirrel in Kunming, Yunnan Province, China
verfasst von: Jiali Wang
Nan Li
Zhao Li
Lin Liu
Yuwen He
Jinxin Meng
Shunxiang Li
Jinglin Wang
Publikationsdatum: 09.05.2020
Verlag: Springer Vienna
Erschienen in: Archives of Virology / Ausgabe 6/2020
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-020-04613-7

Leitlinien kompakt für die Innere Medizin

Mit medbee Pocketcards sicher entscheiden.

^{Seit 2022 gehört die medbee GmbH zum Springer Medizin Verlag}

Kostenlos registrieren

Neu im Fachgebiet Innere Medizin

24.04.2024 | DGIM 2024 | Nachrichten

Update Innere Medizin

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.

Newsletter bestellen

Live-Webinar: Aktuelle Leitlinien bei Herz-Kreislauf-Erkrankungen

Springer Medizin

Identification of a novel bocaparvovirus in a wild squirrel in Kunming, Yunnan Province, China

Abstract

Leitlinien kompakt für die Innere Medizin

Neu im Fachgebiet Innere Medizin

Bei Senioren mit Prostatakarzinom auf Anämie achten!

Wie erfolgreich ist eine Re-Ablation nach Rezidiv?

Europäische Ernährungsgewohnheiten: Das sind die häufigsten Fehler

Hinter dieser Appendizitis steckte ein Erreger

Update Innere Medizin

Live-Webinar: Aktuelle Leitlinien bei Herz-Kreislauf-Erkrankungen

Springer Medizin

Abstract

Bitte loggen Sie sich ein, um Zugang zu diesem Inhalt zu erhalten

Weitere Artikel der Ausgabe 6/2020

Translating the language of giants: translation-related genes as a major contribution of giant viruses to the virosphere

Prevalence and molecular characterization of parechovirus A in children with acute gastroenteritis in Shenzhen, 2016–2018

Epidemiology, molecular characterization, and recombination analysis of chicken anemia virus in Guangdong province, China

Intra-host diversity of hepatitis B virus during mother-to-child transmission: the X gene may play a key role in virus survival in children after transmission

Complete genome sequence of Phobos: a novel bacteriophage with unusual genomic features that infects Pseudomonas syringae

Isolation and complete genome sequence of a novel cyanophage, S-B05, infecting an estuarine Synechococcus strain: insights into environmental adaptation

Leitlinien kompakt für die Innere Medizin

Neu im Fachgebiet Innere Medizin

Bei Senioren mit Prostatakarzinom auf Anämie achten!

Wie erfolgreich ist eine Re-Ablation nach Rezidiv?

Europäische Ernährungsgewohnheiten: Das sind die häufigsten Fehler

Hinter dieser Appendizitis steckte ein Erreger

Update Innere Medizin