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01.03.2023 | Brief Report

Identification of coronaviruses in bats and rodents in northern and central Argentina

verfasst von: Franco Lucero Arteaga, Marcelo Miragaya, Nicolas Molina, Mariela Mondino, Cesar Bracamonte, Gabriel Capitelli, Silvia Mundo, Carolina Torres, Ana Bratanich

Erschienen in: Archives of Virology | Ausgabe 3/2023

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Abstract

Due to the present pandemic situation and the many animal species that are epidemiologically involved, there has been a surge of renewed interest in investigating the coronavirus (CoV) population circulating in wildlife, especially bats and rodents, which are potential reservoirs of new human pathogens. In Argentina, information about the viruses present in these mammals is very limited. To investigate the presence of coronaviruses in this country, we obtained 457 samples from hematophagous, insectivorous, and frugivorous bats and rodents from two regions of Argentina. We report here the detection of alphacoronavirus sequences in three groups of bats as well as in rodents. Phylogenetic analysis showed the closest relationships to alphacoronaviruses from Brazil.

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Wong A, Lau S, Woo P (2021) Interspecies Jumping of Bat Coronaviruses. Viruses 13(11):2188. https://doi.org/10.3390/v13112188CrossRefPubMedPubMedCentral

Calisher CH, Childs JE, Field HE, Holmes KV, Schountz T (2006) Bats: important reservoir hosts of emerging viruses. Clin Microbiol Rev 19(3):531–545. https://doi.org/10.1128/CMR.00017-06CrossRefPubMedPubMedCentral

Cibulski SP, de Sales Lima FE, Teixeira TF, Varela A, Scheffer CM, Mayer FQ, Witt AA, Roehe PM (2021) Detection of multiple viruses in oropharyngeal samples from Brazilian free-tailed bats (Tadarida brasiliensis) using viral metagenomics. Arch Virol 166(1):207–212. https://doi.org/10.1007/s00705-020-04825-xCrossRefPubMed

Ruiz-Aravena M, McKee C, Gamble A, Lunn T, Morris A, Snedden CE, Yinda CK, Port JR, Buchholz DW, Yeo YY, Faust C, Jax E, Dee L, Jones DN, Kessler MK, Falvo C, Crowley D, Bharti N, Brook CE, Aguilar HC, …, Plowright RK (2022) Ecology, evolution and spillover of coronaviruses from bats. Nat Rev Microbiol 20(5):299–314. https://doi.org/10.1038/s41579-021-00652-2CrossRefPubMed

Caraballo DA (2022) Cross-Species Transmission of Bat Coronaviruses in the Americas: Contrasting Patterns between Alphacoronavirus and Betacoronavirus. Microbiol Spectr 10. https://doi.org/10.1128/spectrum.01411-25

Caraballo DA, Montani ME, Martínez LM, Antoniazzi LR, Sambrana TC, Fernández C, Cisterna DM, Beltrán FJ, Colombo VC (2020) Heterogeneous taxonomic resolution of cytochrome b gene identification of bats from Argentina: Implications for field studies. PLoS ONE 15(12):e0244750. https://doi.org/10.1371/journal.pone.0244750CrossRefPubMedPubMedCentral

Chu DK, Leung CY, Gilbert M, Joyner PH, Ng EM, Tse TM, Guan Y, Peiris JS, Poon LL (2011) Avian coronavirus in wild aquatic birds. J Virol 85(23):12815–12820. https://doi.org/10.1128/JVI.05838-11CrossRefPubMedPubMedCentral

Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30:772–780. https://doi.org/10.1093/molbev/mst010CrossRefPubMedPubMedCentral

Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98

10.

Ronquist F, Teslenko M, Van Der Mark P et al (2012) Mrbayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61:539–542. https://doi.org/10.1093/sysbio/sys029CrossRefPubMedPubMedCentral

11.

Kalyaanamoorthy S, Minh BQ, Wong TKF et al (2017) ModelFinder: Fast model selection for accurate phylogenetic estimates. Nat Methods 14:587–589. https://doi.org/10.1038/nmeth.4285CrossRefPubMedPubMedCentral

12.

Rambaut A, Drummond AJ, Xie D et al (2018) Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Syst Biol 67:901–904. https://doi.org/10.1093/sysbio/syy032CrossRefPubMedPubMedCentral

13.

Minh BQ, Schmidt HA, Chernomor O et al (2020) IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era. Mol Biol Evol 37:1530–1534. https://doi.org/10.1093/molbev/msaa015CrossRefPubMedPubMedCentral

14.

Guindon S, Dufayard JF, Lefort V et al (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59:307–321CrossRefPubMed

15.

Hoang DT, Chernomor O, von Haeseler A et al (2018) UFBoot2: Improving the Ultrafast Bootstrap Approximation. Mol Biol Evol 35:518–522. https://doi.org/10.1093/molbev/msx28CrossRefPubMed

16.

Tamura K, Stecher G, Kumar S (2021) MEGA 11: Molecular Evolutionary Genetics Analysis Version 11. Molecular Biology and Evolution https://doi.org/10.1093/molbev/msab120.

17.

Caraballo DA, Sabio MS, Colombo VC, Piccirilli MG, Vico L, Hirmas Riade SM, Campos J, Martínez G, Beltrán F, Baumeister E, Cisterna DM The Role of Molossidae and Vespertilionidae in Shaping the Diversity of Alphacoronaviruses in the Americas. Microbiol Spectr. 2022 Oct 12:e0314322. doi: https://doi.org/10.1128/spectrum.03143-22. Epub ahead of print. PMID: 36222689

18.

Bolatti EM, Zorec TM, Montani ME, Hošnjak L, Chouhy D, Viarengo G, Casal PE, Barquez RM, Poljak M, Giri AA (2020) A Preliminary Study of the Virome of the South American Free-Tailed Bats (Tadarida brasiliensis) and Identification of Two Novel Mammalian Viruses. Viruses 12(4):422. https://doi.org/10.3390/v12040422CrossRefPubMedPubMedCentral

19.

Bolatti EM, Viarengo G, Zorec TM, Cerri A, Montani ME, Hosnjak L, Casal PE, Bortolotto E, Di Domenica V, Chouhy D, Allasia MB, Barquez RM, Poljak M, Giri AA (2022) Viral Metagenomic Data Analyses of Five New World Bat Species from Argentina: Identification of 35 Novel DNA Viruses. Microorganisms. Jan 24;10(2):266. doi: https://doi.org/10.3390/microorganisms10020266. PMID: 35208721; PMCID: PMC8880087

20.

Lima FE, Campos FS, Filho K, Batista HC, Carnielli HB, Cibulski P Jr, Spilki SP, Roehe FR, P. M., Franco AC (2013) Detection of Alphacoronavirus in velvety free-tailed bats (Molossus molossus) and Brazilian free-tailed bats (Tadarida brasiliensis) from urban area of Southern Brazil. Virus Genes 47(1):164–167. https://doi.org/10.1007/s11262-013-0899-xCrossRefPubMedPubMedCentral

21.

Góes L, Campos A, Carvalho C, Ambar G, Queiroz LH, Cruz-Neto AP, Munir M, Durigon EL (2016) Genetic diversity of bats coronaviruses in the Atlantic Forest hotspot biome, Brazil. Infection, genetics and evolution: journal of molecular epidemiology and evolutionary genetics in infectious diseases. 44:510–513. https://doi.org/10.1016/j.meegid.2016.07.034

22.

Falcón A, Vázquez-Morón S, Casas I, Aznar C, Ruiz G, Pozo F, Perez-Breña P, Juste J, Ibáñez C, Garin I, Aihartza J, Echevarría JE (2011) Detection of alpha and betacoronaviruses in multiple Iberian bat species. Arch Virol 156(10):1883–1890. https://doi.org/10.1007/s00705-011-1057-1CrossRefPubMedPubMedCentral

23.

Liu W, Tang F, Fontanet A, Zhan L, Zhao QM, Zhang PH, Wu XM, Zuo SQ, Baril L, Vabret A, Xin ZT, Shao YM, Yang H, Cao WC (2004) Long-term SARS coronavirus excretion from patient cohort. China Emerg Infect Dis 10(10):1841–1843. https://doi.org/10.3201/eid1010.040297CrossRefPubMed

24.

Tang XC, Zhang JX, Zhang SY, Wang P, Fan XH, Li LF, Li G, Dong BQ, Liu W, Cheung CL, Xu KM, Song WJ, Vijaykrishna D, Poon LL, Peiris JS, Smith GJ, Chen H, Guan Y (2006) Prevalence and genetic diversity of coronaviruses in bats from China. J Virol 80(15):7481–7490. https://doi.org/10.1128/JVI.00697-06CrossRefPubMedPubMedCentral

25.

Carrington CV, Foster JE, Zhu HC, Zhang JX, Smith GJ, Thompson N, Auguste AJ, Ramkissoon V, Adesiyun AA, Guan Y (2008) Detection and phylogenetic analysis of group 1 coronaviruses in South American bats. Emerg Infect Dis 14(12):1890–1893. https://doi.org/10.3201/eid1412.080642CrossRefPubMedPubMedCentral

26.

Brandão PE, Scheffer K, Villarreal LY, Achkar S, Oliveira R, Fahl W, Castilho JG, Kotait I, Richtzenhain LJ (2008) A coronavirus detected in the vampire bat Desmodus rotundus. Brazilian J Infect diseases: official publication Brazilian Soc Infect Dis 12(6):466–468. https://doi.org/10.1590/s1413-86702008000600003CrossRef

27.

Bittar C, Machado R, Comelis MT, Bueno LM, Beguelini MR, Morielle-Versute E, Nogueira ML, Rahal P (2020) Alphacoronavirus Detection in Lungs, Liver, and Intestines of Bats from Brazil. Microb Ecol 79(1):203–212. https://doi.org/10.1007/s00248-019-01391-xCrossRefPubMed

28.

Anthony SJ, Ojeda-Flores R, Rico-Chávez O, Navarrete-Macias I, Zambrana-Torrelio CM, Rostal MK, Epstein JH, Tipps T, Liang E, Sanchez-Leon M, Sotomayor-Bonilla J, Aguirre AA, Ávila-Flores R, Medellín RA, Goldstein T, Suzán G, Daszak P, Lipkin WI (2013) Coronaviruses in bats from Mexico. J Gen Virol 94(Pt 5):1028–1038. https://doi.org/10.1099/vir.0.049759-0CrossRefPubMedPubMedCentral

29.

Moreira-Soto A, Taylor-Castillo L, Vargas-Vargas N, Rodríguez-Herrera B, Jiménez C, Corrales-Aguilar E (2015) Neotropical Bats from Costa Rica harbour Diverse Coronaviruses. Zoonoses Public Health 62(7):501–505. https://doi.org/10.1111/zph.12181CrossRefPubMedPubMedCentral

Titel: Identification of coronaviruses in bats and rodents in northern and central Argentina
verfasst von: Franco Lucero Arteaga
Marcelo Miragaya
Nicolas Molina
Mariela Mondino
Cesar Bracamonte
Gabriel Capitelli
Silvia Mundo
Carolina Torres
Ana Bratanich
Publikationsdatum: 01.03.2023
Verlag: Springer Vienna
Erschienen in: Archives of Virology / Ausgabe 3/2023
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-023-05703-y

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Identification of coronaviruses in bats and rodents in northern and central Argentina

Abstract

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