Skip to main content
Erschienen in:

06.09.2018 | Brief Report

Identification of rehmannia virus 1, a novel putative member of the genus Closterovirus, from Rehmannia glutinosa

verfasst von: Sun-Jung Kwon, Meilan Jin, In-Sook Cho, Ju-Yeon Yoon, Gug-Seoun Choi

Erschienen in: Archives of Virology | Ausgabe 12/2018

Einloggen, um Zugang zu erhalten

Abstract

Transcriptome sequencing analysis of a symptomatic Rehmannia glutinosa plant revealed a virome containing two known RNA viruses and one novel virus. In this study, we examined the molecular and biological characteristics of the novel virus. The complete genome of the novel virus is composed of monopartite single-stranded RNA of 15,322 nucleotides with 69% nucleotide sequence identity (with 68% coverage) to tobacco virus 1. Its genome organization is typical of the members of the genus Closterovirus, containing nine putative open reading frames. Molecular and phylogenetic analyses of the genome and encoded protein sequences strongly support that the identified virus is a new species of the genus Closterovirus in the family Closteroviridae. The name rehmannia virus 1 (ReV1) is proposed for this novel virus.
Anhänge
Nur mit Berechtigung zugänglich
Literatur
1.
Zurück zum Zitat Al Rwahnih M, Dolja VV, Daubert S, Koonin EV, Rowhani A (2012) Genomic and biological analysis of Grapevine leafroll-associated virus 7 reveals a possible new genus within the family Closteroviridae. Virus Res 163:302–309CrossRef Al Rwahnih M, Dolja VV, Daubert S, Koonin EV, Rowhani A (2012) Genomic and biological analysis of Grapevine leafroll-associated virus 7 reveals a possible new genus within the family Closteroviridae. Virus Res 163:302–309CrossRef
2.
Zurück zum Zitat Alzhanova DV, Napuli AJ, Creamer R, Dolja VV (2001) Cell-to-cell movement and assembly of a plant closterovirus: roles for the capsid proteins and Hsp70 homolog. EMBO J 20:6997–7007CrossRef Alzhanova DV, Napuli AJ, Creamer R, Dolja VV (2001) Cell-to-cell movement and assembly of a plant closterovirus: roles for the capsid proteins and Hsp70 homolog. EMBO J 20:6997–7007CrossRef
3.
Zurück zum Zitat Blouin AG, Biccheri R, Khalifa ME, Pearson MN, Poggi Pollini C, Hamiaux C, Cohen D, Ratti C (2018) Characterization of Actinidia virus 1, a new member of the family Closteroviridae encoding a thaumatin-like protein. Arch Virol 163:229–234CrossRef Blouin AG, Biccheri R, Khalifa ME, Pearson MN, Poggi Pollini C, Hamiaux C, Cohen D, Ratti C (2018) Characterization of Actinidia virus 1, a new member of the family Closteroviridae encoding a thaumatin-like protein. Arch Virol 163:229–234CrossRef
4.
Zurück zum Zitat Desbiez C, Lecoq H (2004) The nucleotide sequence of Watermelon mosaic virus (WMV, Potyvirus) reveals interspecific recombination between two related potyviruses in the 5’ part of the genome. Arch Virol 149:1619–1632CrossRef Desbiez C, Lecoq H (2004) The nucleotide sequence of Watermelon mosaic virus (WMV, Potyvirus) reveals interspecific recombination between two related potyviruses in the 5’ part of the genome. Arch Virol 149:1619–1632CrossRef
5.
Zurück zum Zitat Dolja VV, Kreuze JF, Valkonen JP (2006) Comparative and functional genomics of closteroviruses. Virus Res 117:38–51CrossRef Dolja VV, Kreuze JF, Valkonen JP (2006) Comparative and functional genomics of closteroviruses. Virus Res 117:38–51CrossRef
6.
Zurück zum Zitat Gushchin VA, Karlin DG, Makhotenko AV, Khromov AV, Erokhina TN, Solovyev AG, Morozov SY, Agranovsky AA (2017) A conserved region in the Closterovirus 1a polyprotein drives extensive remodeling of endoplasmic reticulum membranes and induces motile globules in Nicotiana benthamiana cells. Virology 502:106–113CrossRef Gushchin VA, Karlin DG, Makhotenko AV, Khromov AV, Erokhina TN, Solovyev AG, Morozov SY, Agranovsky AA (2017) A conserved region in the Closterovirus 1a polyprotein drives extensive remodeling of endoplasmic reticulum membranes and induces motile globules in Nicotiana benthamiana cells. Virology 502:106–113CrossRef
7.
Zurück zum Zitat He Y, Yang Z, Hong N, Wang G, Ning G, Xu W (2015) Deep sequencing reveals a novel closterovirus associated with wild rose leaf rosette disease. Mol Plant Pathol 16:449–458CrossRef He Y, Yang Z, Hong N, Wang G, Ning G, Xu W (2015) Deep sequencing reveals a novel closterovirus associated with wild rose leaf rosette disease. Mol Plant Pathol 16:449–458CrossRef
8.
Zurück zum Zitat Kozlowska-Makulska A, Hasiow-Jaroszewska B, Szyndel MS, Herrbach E, Bouzoubaa S, Lemaire O, Beuve M (2015) Phylogenetic relationships and the occurrence of interspecific recombination between beet chlorosis virus (BChV) and Beet mild yellowing virus (BMYV). Arch Virol 160:429–433CrossRef Kozlowska-Makulska A, Hasiow-Jaroszewska B, Szyndel MS, Herrbach E, Bouzoubaa S, Lemaire O, Beuve M (2015) Phylogenetic relationships and the occurrence of interspecific recombination between beet chlorosis virus (BChV) and Beet mild yellowing virus (BMYV). Arch Virol 160:429–433CrossRef
9.
Zurück zum Zitat Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33:1870–1874CrossRef Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33:1870–1874CrossRef
10.
Zurück zum Zitat Kwon SJ, Tan SH, Vidalakis G (2014) Complete nucleotide sequence and genome organization of an endornavirus from bottle gourd (Lagenaria siceraria) in California, USA. Virus Genes 49:163–168CrossRef Kwon SJ, Tan SH, Vidalakis G (2014) Complete nucleotide sequence and genome organization of an endornavirus from bottle gourd (Lagenaria siceraria) in California, USA. Virus Genes 49:163–168CrossRef
11.
Zurück zum Zitat Kwon SJ, Kim YB, Back CK, Chung BN (2018) First Report of a mixed infection of Youcai mosaic virus and Relunannia mosaic virus in Rehmannia glutinosa in Korea. Plant Dis 102:462–463CrossRef Kwon SJ, Kim YB, Back CK, Chung BN (2018) First Report of a mixed infection of Youcai mosaic virus and Relunannia mosaic virus in Rehmannia glutinosa in Korea. Plant Dis 102:462–463CrossRef
12.
Zurück zum Zitat Martelli GP, Abou Ghanem-Sabanadzovic N, Agranovsky AA, Al Rwahnih M, Dolja VV, Dovas CI, Fuchs M, Gugerli P, Hu JS, Jelkmann W, Katis NI, Maliogka VI, Melzer MJ, Menzel W, Minafra A, Rott ME, Rowhani A, Sabanadzovic S, Saldarelli P (2012) Taxonomic revision of the family closteroviridae with special reference to the grapevine leafroll-associated members of the genus Ampelovirus and the putative species unassigned to the family. J Plant Pathol 94:7–19 Martelli GP, Abou Ghanem-Sabanadzovic N, Agranovsky AA, Al Rwahnih M, Dolja VV, Dovas CI, Fuchs M, Gugerli P, Hu JS, Jelkmann W, Katis NI, Maliogka VI, Melzer MJ, Menzel W, Minafra A, Rott ME, Rowhani A, Sabanadzovic S, Saldarelli P (2012) Taxonomic revision of the family closteroviridae with special reference to the grapevine leafroll-associated members of the genus Ampelovirus and the putative species unassigned to the family. J Plant Pathol 94:7–19
13.
Zurück zum Zitat Martin DP, Murrell B, Golden M, Khoosal A, Muhire B (2015) RDP4: detection and analysis of recombination patterns in virus genomes. Virus Evol 1:vev003CrossRef Martin DP, Murrell B, Golden M, Khoosal A, Muhire B (2015) RDP4: detection and analysis of recombination patterns in virus genomes. Virus Evol 1:vev003CrossRef
14.
Zurück zum Zitat Peremyslov VV, Pan YW, Dolja VV (2004) Movement protein of a closterovirus is a type III integral transmembrane protein localized to the endoplasmic reticulum. J Virol 78:3704–3709CrossRef Peremyslov VV, Pan YW, Dolja VV (2004) Movement protein of a closterovirus is a type III integral transmembrane protein localized to the endoplasmic reticulum. J Virol 78:3704–3709CrossRef
15.
Zurück zum Zitat Rubio L, Guerri J, Moreno P (2013) Genetic variability and evolutionary dynamics of viruses of the family Closteroviridae. Front Microbiol 4:151CrossRef Rubio L, Guerri J, Moreno P (2013) Genetic variability and evolutionary dynamics of viruses of the family Closteroviridae. Front Microbiol 4:151CrossRef
16.
Zurück zum Zitat Seo JK, Ohshima K, Lee HG, Son M, Choi HS, Lee SH, Sohn SH, Kim KH (2009) Molecular variability and genetic structure of the population of soybean mosaic virus based on the analysis of complete genome sequences. Virology 393:91–103CrossRef Seo JK, Ohshima K, Lee HG, Son M, Choi HS, Lee SH, Sohn SH, Kim KH (2009) Molecular variability and genetic structure of the population of soybean mosaic virus based on the analysis of complete genome sequences. Virology 393:91–103CrossRef
17.
Zurück zum Zitat Seo JK, Kang SH, Seo BY, Jung JK, Kim KH (2010) Mutational analysis of interaction between coat protein and helper component-proteinase of Soybean mosaic virus involved in aphid transmission. Mol Plant Pathol 11:265–276CrossRef Seo JK, Kang SH, Seo BY, Jung JK, Kim KH (2010) Mutational analysis of interaction between coat protein and helper component-proteinase of Soybean mosaic virus involved in aphid transmission. Mol Plant Pathol 11:265–276CrossRef
18.
Zurück zum Zitat Seo JK, Kim MK, Kwak HR, Kim JS, Choi HS (2017) Complete genome sequence of longan witches’ broom-associated virus, a novel member of the family Potyviridae. Arch Virol 162:2885–2889CrossRef Seo JK, Kim MK, Kwak HR, Kim JS, Choi HS (2017) Complete genome sequence of longan witches’ broom-associated virus, a novel member of the family Potyviridae. Arch Virol 162:2885–2889CrossRef
19.
Zurück zum Zitat Seo JK, Kwak HR, Kim MK, Kim JS, Choi HS (2017) The complete genome sequence of a novel virus, bellflower veinal mottle virus, suggests the existence of a new genus within the family Potyviridae. Arch Virol 162:2457–2461CrossRef Seo JK, Kwak HR, Kim MK, Kim JS, Choi HS (2017) The complete genome sequence of a novel virus, bellflower veinal mottle virus, suggests the existence of a new genus within the family Potyviridae. Arch Virol 162:2457–2461CrossRef
20.
Zurück zum Zitat Tzanetakis IE, Postman JD, Martin RR (2005) Characterization of a novel member of the family Closteroviridae from Mentha spp. Phytopathology 95:1043–1048CrossRef Tzanetakis IE, Postman JD, Martin RR (2005) Characterization of a novel member of the family Closteroviridae from Mentha spp. Phytopathology 95:1043–1048CrossRef
21.
Zurück zum Zitat Wang F, Qi S, Gao Z, Akinyemi IA, Xu D, Zhou B (2016) Complete genome sequence of tobacco virus 1, a closterovirus from Nicotiana tabacum. Arch Virol 161:1087–1090CrossRef Wang F, Qi S, Gao Z, Akinyemi IA, Xu D, Zhou B (2016) Complete genome sequence of tobacco virus 1, a closterovirus from Nicotiana tabacum. Arch Virol 161:1087–1090CrossRef
22.
Zurück zum Zitat Zhang ZC, Lei CY, Zhang LF, Yang XX, Chen R, Zhang DS (2008) The complete nucleotide sequence of a novel Tobamovirus, Rehmannia mosaic virus. Arch Virol 153:595–599CrossRef Zhang ZC, Lei CY, Zhang LF, Yang XX, Chen R, Zhang DS (2008) The complete nucleotide sequence of a novel Tobamovirus, Rehmannia mosaic virus. Arch Virol 153:595–599CrossRef
Metadaten
Titel
Identification of rehmannia virus 1, a novel putative member of the genus Closterovirus, from Rehmannia glutinosa
verfasst von
Sun-Jung Kwon
Meilan Jin
In-Sook Cho
Ju-Yeon Yoon
Gug-Seoun Choi
Publikationsdatum
06.09.2018
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 12/2018
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-018-4014-4

Kompaktes Leitlinien-Wissen Innere Medizin (Link öffnet in neuem Fenster)

Mit medbee Pocketcards schnell und sicher entscheiden.
Leitlinien-Wissen kostenlos und immer griffbereit auf ihrem Desktop, Handy oder Tablet.

Neu im Fachgebiet Innere Medizin

Studie zur HIFU bei Prostatakrebs lässt viele Fragen offen

Führt eine HIFU-Ablation beim Prostatakarzinom im Vergleich mit einer radikalen Prostatektomie zu ähnlichen onkologischen, aber besseren funktionalen Ergebnissen? Interimsdaten der französischen HIFI-Studie sind uneindeutig. In einem Kommentar zur Studie werden zumindest drei allgemeine Erkenntnisse herausgearbeitet.

Leitlinienkonformes Management thermischer Verletzungen

Thermische Verletzungen gehören zu den schwerwiegendsten Traumen und hinterlassen oft langfristige körperliche und psychische Spuren. Die aktuelle S2k-Leitlinie „Behandlung thermischer Verletzungen im Kindesalter (Verbrennung, Verbrühung)“ bietet eine strukturierte Übersicht über das empfohlene Vorgehen.

Frühe Hyperoxie nach Reanimation schlecht für die Prognose?

Kommt es sehr früh nach einer kardiopulmonalen Reanimation zu einem Zustand der Hyperoxie, ist dies bei Patientinnen und Patienten nach einem Herzstillstand mit schlechteren funktionellen Ergebnissen assoziiert. Das zeigt eine Sekundäranalyse der TTM-2-Studie.

Infektanfälligkeit in früher Kindheit: eine bleibende Last?

Wenn Kinder in den ersten Lebensjahren immer wieder Infekte durchmachen, lässt dies Schlüsse auf die Infektneigung in der weiteren Kindheit zu.

EKG Essentials: EKG befunden mit System (Link öffnet in neuem Fenster)

In diesem CME-Kurs können Sie Ihr Wissen zur EKG-Befundung anhand von zwölf Video-Tutorials auffrischen und 10 CME-Punkte sammeln.
Praxisnah, relevant und mit vielen Tipps & Tricks vom Profi.

Update Innere Medizin

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.