01.12.2017 | Research article | Ausgabe 1/2017 Open Access

Influence of chemotherapeutic drug-related gene polymorphisms on toxicity and survival of early breast cancer patients receiving adjuvant chemotherapy
- Zeitschrift:
- BMC Cancer > Ausgabe 1/2017
Electronic supplementary material
Background
Methods
Study population
Chemotherapy regimen
Genotyping analysis
Statistical analysis
Results
Patient characteristics
Characteristics
|
No. of patients (%)
|
---|---|
All patients
|
244 (100)
|
Median age, years (min-max)
|
51.3 (26.6–75.6)
|
Stage
|
|
I
|
111 (45.5)
|
II
|
93 (38.1)
|
III
|
40 (16.4)
|
Tumor size, ≤2 cm
|
49 (34.0)
|
Positive lymph nodes status
|
107 (43.9)
|
Tumor grade
|
|
G1
|
18 (7.4)
|
G2
|
143 (58.6)
|
G3
|
59 (24.2)
|
Unknown
|
24 (9.8)
|
Histology
|
|
Ductal infiltrating carcinoma
|
212 (86.9)
|
Other histology
|
32 (14.1)
|
Positive ER status (cut-off > 10%)
|
154 (63.1)
|
Positive PgRstatus(cut-off > 10%)
|
137 (56.1)
|
Ki67 positive status(cut-off > 14%)
|
112 (45.9)
|
Positive p53 status(cut-off ≥ 1%)
|
34 (13.9)
|
Positive HER2
a(IHC/FISH)
|
26 (10.7)
|
Surgery
|
|
Conservative
|
201 (82.4)
|
Mastectomy
|
43 (17.6)
|
Adjuvant chemotherapy
|
|
CMF
|
124 (50.8)
|
FEC
|
120 (49.2)
|
Endocrine therapy
|
148 (60.6)
|
Radiotherapy
|
205 (84.0)
|
Frequencies and associations among the polymorphisms and clinical-pathological features
Toxicity and effect of polymorphisms in whole BC group
HEMATOLOGIC TOXICITY
|
NON-HEMATOLOGIC TOXICITY
|
|||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LEUCOPENIA
|
NEUTROPENIA
|
STOMATITIS
|
HEPATIC
|
|||||||||||||
Genotype
|
0–1-2
|
3–4
|
OR (95%CI)
|
p
|
0–1-2
|
3–4
|
OR (95%CI)
|
P
|
0–1-2
|
3–4
|
OR (95%CI)
|
p
|
0–1-2
|
3–4
|
OR (95%CI)
|
p
|
GSTT1
|
||||||||||||||||
null
|
47
|
3
|
1 (reference)
|
0.155
|
45
|
5
|
1 (reference)
|
0.349
|
49
|
1
|
1 (reference)
|
0.822
|
49
|
1
|
1 (reference)
|
0.335
|
Present
|
190
|
4
|
0.33 (0.07–1.52)
|
182
|
12
|
0.59 (0.30–1.77)
|
191
|
3
|
0.77 (0.08–7.56)
|
193
|
1
|
0.25(0.02–4.13)
|
||||
GSTM1
|
||||||||||||||||
null
|
129
|
3
|
1 (reference)
|
0.548
|
122
|
10
|
1 (reference)
|
131
|
1
|
a
|
132
|
0
|
a
|
|||
Present
|
108
|
4
|
1.59 (0.35–7.27)
|
105
|
7
|
0.81 (0.30–2.21)
|
0.686
|
109
|
3
|
110
|
2
|
|||||
GSTP1
|
||||||||||||||||
AA
|
141
|
4
|
1 (reference)
|
0.832
|
134
|
11
|
1 (reference)
|
0.150
|
142
|
3
|
1 (reference)
|
0.569
|
144
|
1
|
a
|
|
AG
|
91
|
3
|
1.18 (0.26–5.39)
|
89
|
5
|
0.70 (0.23–2.07)
|
93
|
1
|
0.52 (0.05–5.04)
|
93
|
1
|
|||||
GG
|
3
|
0
|
2
|
1
|
3
|
0
|
3
|
0
|
||||||||
RCF1
|
||||||||||||||||
GG
|
71
|
3
|
1 (reference)
|
0.598
|
69
|
5
|
1 (reference)
|
0.759
|
73
|
1
|
1 (reference)
|
0.824
|
74
|
0
|
a
|
|
GA
|
110
|
3
|
0.64 (0.13–3.29)
|
104
|
9
|
1.19 (0.38–3.72)
|
111
|
2
|
1.32 (0.12–14.8)
|
113
|
0
|
|||||
AA
|
56
|
1
|
0.42 (0.04–4.17)
|
0.461
|
54
|
3
|
0.77 (0.18–3.35)
|
0.724
|
56
|
1
|
1.30 (0.08–21.3)
|
0.852
|
55
|
2
|
||
AA vs. GA + GG
|
0.54 (0.06–4.57)
|
0.571
|
0.69 (0.19–2.48)
|
0.566
|
1.10 (0.11–10.74)
|
0.938
|
||||||||||
MTHFR
|
||||||||||||||||
CC
|
64
|
1
|
1 (reference)
|
66
|
1
|
1 (reference)
|
67
|
0
|
a
|
67
|
0
|
a
|
||||
CT
|
113
|
3
|
0.57 (0.11–2.89)
|
0.494
|
103
|
13
|
8.32 (1.06–65.2)
|
0.043
|
114
|
2
|
115
|
1
|
||||
TT
|
60
|
1
|
0.36 (0.04–3.51)
|
0.376
|
58
|
3
|
3.41 (0.35–33.7)
|
0.294
|
59
|
2
|
60
|
1
|
||||
TT vs. CT + CC
|
0.49 (0.06–4.17)
|
0.515
|
0.62 (0.17–2.25)
|
0.472
|
3.07 (0.42–22.3)
|
0.268
|
||||||||||
TS-TR
|
||||||||||||||||
2R/2R
|
84
|
2
|
1 (reference)
|
83
|
3
|
1 (reference)
|
85
|
1
|
1 (reference)
|
86
|
0
|
a
|
||||
2R/3R
|
74
|
4
|
0.44 (0.08–2.47)
|
0.352
|
68
|
10
|
0.25 (0.06–0.93)
|
0.038
|
76
|
2
|
0.45 (0.04–5.03)
|
0.514
|
78
|
0
|
||
3R/3R
|
79
|
1
|
0.23 (0.03–2.14)
|
0.199
|
76
|
4
|
0.36 (0.11–1.19)
|
0.095
|
79
|
1
|
0.48 (0.04–5.42)
|
0.553
|
78
|
2
|
||
3/3R vs. 2/3R + 2/2R
|
0.33 (0.04–2.82)
|
0.313
|
0.61 (0.19–1.94)
|
0.403
|
0.68 (0.07–6.64)
|
0.740
|
Survival analysis
Univariate analysis - DFS
|
Univariate analysis - OS
|
|||||||
---|---|---|---|---|---|---|---|---|
Variable
|
HR
|
95% CI
|
p
|
HR
|
95% CI
|
p
|
||
Age (per years)
|
1.01
|
0.99
|
1.04
|
0.270
|
1.05
|
1.01
|
1.08
|
0.005
|
ER- PgR-
|
1 (reference)
|
1 (reference)
|
||||||
ER+ PgR- / ER- PgR+
|
0.72
|
0.40
|
1.30
|
0.273
|
0.64
|
0.30
|
1.40
|
0.269
|
ER+ PgR+
|
0.51
|
0.29
|
0.89
|
0.018
|
0.51
|
0.25
|
1.04
|
0.066
|
Stage I
|
1 (reference)
|
1 (reference)
|
||||||
Stage II
|
2.01
|
1.13
|
3.56
|
0.018
|
3.73
|
1.48
|
9.41
|
0.005
|
Stage III
|
3.77
|
2.01
|
7.08
|
<0.001
|
9.77
|
3.85
|
24.82
|
<0.001
|
LN (pos vs. neg)
|
1.79
|
1.11
|
2.88
|
0.016
|
2.61
|
1.37
|
4.98
|
0.004
|
HER2 (pos vs. neg)
|
1.51
|
0.75
|
3.04
|
0.251
|
1.67
|
0.70
|
3.97
|
0.248
|
GSTT1 (null vs. present)
|
1.68
|
0.99
|
2.86
|
0.053
|
2.22
|
1.17
|
4.24
|
0.015
|
GSTM1 (present vs. null)
|
1.23
|
0.77
|
1.98
|
0.383
|
1.68
|
0.90
|
3.12
|
0.103
|
RFC1 – AA
|
1 (reference)
|
1 (reference)
|
||||||
RFC1 – GA
|
2.35
|
1.09
|
5.07
|
0.029
|
1.95
|
0.73
|
5.22
|
0.184
|
RFC1 – GG
|
2.89
|
1.31
|
6.38
|
0.009
|
2.90
|
1.07
|
7.88
|
0.036
|
GSTP1 – AA
|
1 (reference)
|
1 (reference)
|
||||||
GSTP1 – AG
|
0.77
|
0.46
|
1.26
|
0.297
|
-
|
-
|
-
|
0.989
|
GSTP1 – GG
|
-
|
-
|
-
|
0.985
|
0.80
|
0.42
|
1.53
|
0.500
|
MTHFR – CC
|
1 (reference)
|
1 (reference)
|
||||||
MTHFR – CT
|
1.28
|
0.72
|
2.27
|
0.394
|
1.02
|
0.49
|
2.13
|
0.957
|
MTHFR – TT
|
0.85
|
0.42
|
1.71
|
0.642
|
0.96
|
0.41
|
2.25
|
0.920
|
TS-TR – 2R/2R
|
1 (reference)
|
1 (reference)
|
||||||
TS-TR – 2R/3R
|
0.62
|
0.35
|
1.11
|
0.105
|
0.67
|
0.31
|
1.48
|
0.327
|
TS-TR – 3R/3R
|
0.80
|
0.46
|
1.41
|
0.439
|
1.11
|
0.54
|
2.28
|
0.767
|
Combined genotype groups*
|
||||||||
Group 1
|
1 (reference)
|
1 (reference)
|
||||||
Group 2
|
4.20
|
1.52
|
11.56
|
0.006
|
4.54
|
1.09
|
18.92
|
0.038
|
Group 3
|
6.61
|
1.93
|
22.59
|
0.003
|
10.12
|
2.04
|
50.19
|
0.005
|
Multivariate analysis* - DFS
|
Multivariate analysis*– OS
|
|||||||
---|---|---|---|---|---|---|---|---|
Variable
|
HR
|
95% CI
|
p
|
HR
|
95% CI
|
p
|
||
GSTT1 (nullvs. Present)
|
1.67
|
0.96
|
2.91
|
0.071
|
2.82
|
1.41
|
5.64
|
0.003
|
RFC1 – AA
|
1 (reference)
|
1 (reference)
|
||||||
RFC1 – GA
|
2.15
|
1.00
|
4.65
|
0.051
|
1.53
|
0.57
|
4.14
|
0.402
|
RFC1 – GG
|
2.64
|
1.18
|
5.90
|
0.018
|
2.62
|
0.94
|
7.31
|
0.066
|
Combined genotype groups**
|
||||||||
Group 1
|
1 (reference)
|
1 (reference)
|
||||||
Group 2
|
3.93
|
1.42
|
10.86
|
0.008
|
3.87
|
0.92
|
16.20
|
0.064
|
Group 3
|
6.35
|
1.82
|
22.17
|
0.004
|
11.53
|
2.26
|
58.71
|
0.003
|