Background
Mutations in the
leucine-rich repeat kinase 2 (
LRRK2) gene are linked to familial Parkinson’s disease (PD), and common variants increase the lifetime risk for PD [
1‐
3].
LRRK2 encodes a large multimeric protein characterized by an enzymatic core with GTPase and serine/threonine kinase activities and several domains surrounding these two domains that are rich in repeats involved in the assembly of signaling complexes [
4]. Among all the reported LRRK2 variants, seven missense mutations, clustered within the enzymatic core of the protein, clearly segregate with disease [
5], with the G2019S substitution being by far the most frequent in both familial and apparently sporadic PD cases [
6]. The G2019S mutation, located in the kinase domain, augments the kinase activity of the protein as revealed by increased S1292 auto-phosphorylation [
7‐
9] and Rabs phosphorylation [
10,
11].
LRRK2 is expressed in several brain regions, including the substantia nigra pars compacta, striatum, hippocampus, cortex, and olfactory bulb [
12,
13]. As well as neurons, LRRK2 is also expressed in astrocytes and microglia [
14], where it has been associated with inflammatory processes related to PD [
15,
16]. In this context, we recently demonstrated that microglia with LRRK2 genetic deletion or kinase inhibition exhibit a reduction of inflammation after lipopolysaccharide (LPS) or α-synuclein pre-formed fibrils (α-Syn pffs) priming. At the molecular level, we found that LRRK2 negatively regulates protein kinase A (PKA) activity, triggering an increase of PKA-mediated phosphorylation and consequent accumulation of NF-κB inhibitory subunit p50 in the nucleus, which ultimately leads to repression of NF-κB target genes [
17]. A cross-talk between LRRK2 and PKA has been reported also by others [
18‐
20]. Parisiadou and colleagues found that LRRK2 acts as a negative modulator of PKA signaling in neurons, observing that genetic deletion of LRRK2 causes increased PKA-mediated phosphorylation of glutamate receptor (GluR) 1, cAMP response element-binding protein (CREB), and cofilin resulting in abnormal synaptogenesis and transmission of striatal projection neurons [
19]. Specifically, they found that LRRK2 interacts with PKA regulatory (R) IIβ subunit and that this interaction occurs between LRRK2 Ras of complex proteins (ROC) domain and PKA RIIβ dimerization domain. Moreover, they reported that PKA RIIβ is mislocalized in the dendritic spines of LRRK2 knock-out (KO) compared to wild-type (WT) neurons, leading them to hypothesize that LRRK2 regulates PKA activity by acting as an A-anchoring kinase protein (AKAP) or AKAP-like.
In its inactive form, PKA is a tetrameric enzyme composed of a R subunit dimer and two catalytic (C) subunits. In the absence of cAMP, a dimer of R subunits binds and suppresses the activity of two C subunits. Conversely, the cooperative binding of cAMP to the R subunits causes a conformational change that leads to the activation of PKA and consequent phosphorylation of its targets [
21]. Typically, PKA is bound to scaffold proteins called AKAPs, which play a critical role in the compartmentalization of cAMP signaling by confining PKA to specific subcellular locations and in physical proximity to its targets [
22]. PKA signaling is tightly controlled also by additional regulatory proteins that are part of the AKAP-PKA multiprotein complex, such as cAMP-degrading phosphodiesterases (PDEs), important to regulate the magnitude and duration of PKA activation, and phosphatases (PP), which dephosphorylate PKA targets to terminate the signal [
23].
Building on previous observations reported by us [
17] and others [
19], in this study, we investigated the molecular mechanism underlying LRRK2-dependent regulation of PKA signaling in microglia. We used a combination of in vitro and ex vivo systems with hyperactive or inactive LRRK2 as well as different readouts of PKA activity, such as LRRK2-PKA RIIβ interaction and PKA RIIβ S114 phosphorylation, to evaluate the impact of LRRK2 on PKA activation. AKAP-PKA RII interaction, PKA RII phosphorylation, and regulation of cAMP content are key events that regulate the on/off state of PKA [
24]. Here, we validated LRRK2 kinase activity as the negative regulator of PKA activation state in microglia cells. Moreover, we demonstrated that LRRK2 controls PKA activity through regulation of PDE4, modulating cAMP degradation, content, and its dependent signaling. We further found that LRRK2 with G2019S pathological mutation decreases PKA activity leading to a reduction of PKA-mediated NF-κB inhibitory signaling with consequent increase of inflammation in primary microglia with LRRK2 G2019S after α-Syn pffs treatment.
Taken together, our results indicate that LRRK2 kinase activity is a crucial regulator of PKA signaling in microglia and propose PDE4 as a novel LRRK2 effector protein in these cells.
Materials and methods
Animals
All animal procedures were carried out in strict accordance with the recommendations issued in the guidelines for the Care and Use of Laboratory Animals of the National Institutes of Health (NIH) for animals housed at NIH and for the European Community Council Directive 2010/63/UE for animals housed at the University of Padova. The protocols were approved by the Institutional Animal Care and Use Committees of the US National Institute on Aging (approval number 463-LNG-2018) and by the Ethics Committee of the University of Padova (Project ID 1041/2016-PR), respectively.
Cell cultures
BV2 cells were cultured in RPMI-40 medium (Sigma Aldrich) supplemented with 10% fetal bovine serum (FBS), 2 mM glutamine, penicillin, and streptomycin. HEK293T cells were cultured in Dulbecco modified Eagle medium (DMEM, Life Technologies) supplemented with 10% FBS, penicillin, and streptomycin. Primary microglia cells were derived from postnatal days 1–4 (P1–4) LRRK2 wild-type and G2019S knock-in (KI) mice as recently described [
17]. Specifically, cerebral cortices were mechanically dissociated in cold phosphate-buffered saline (PBS, Sigma Aldrich), then cellular suspension was allowed to settle for 5 min, and the top fraction was collected, centrifuged for 5 min at 1000
g, and re-suspended in DMEM-F12, supplemented with 10% FBS, 2 mM glutamine, 2 mM sodium pyruvate (Sigma Aldrich), penicillin, and streptomycin. Cell suspension obtained from three brains was plated on poly-L-lysine (0.1 mg/ml, Sigma Aldrich)-coated T-75 flask. After 4 days, the medium was replaced and the mixed glial culture was maintained until day 14. At 12 days, microglia cells were isolated from the mixed culture by shaking for 4 h at 160 rpm, and the purity of the obtained culture was verified by double immunofluorescence with mouse anti-CD11b (Cell signaling #ab1211) for microglia cells and with rabbit anti-GFAP (DAKO #Z0334) for astrocytes. The amount of astrocyte contaminants was negligible.
All cells were maintained at 37 °C in a 5% CO2 controlled atmosphere.
Plasmids and transfection
HEK293T cell transfections were performed using polyethylenimine (Polysciences) following the manufacturer’s recommendations. Eukaryotic expression constructs of 3xFlag-tagged LRRK2 WT and G2019S, green fluorescence protein (GFP)-tagged PKA RIIβ and GFP empty vector, generated as described previously [
19,
25], were used for co-immunoprecipitation (co-IP) assays, while plasmid of GFP-tagged LRRK2 WT, generated as reported [
26], was used for pull-down assays.
Compounds and treatments
During treatments, BV2 cells were cultured in medium containing 1% FBS. LRRK2 inhibitor GSK2578215A (GSK, Tocris Bioscience) and forskolin (Sigma Aldrich) were used at 2 μM and 30 μM, respectively, for 90 min. PDE4 inhibitor rolipram (Tocris Bioscience) was used at 10 μM for 30 min. Dimethyl sulfoxide (DMSO) was used as control.
Production and aggregation of recombinant α-Syn
Human α-Syn pffs were generated from recombinant α-Syn produced by a lipid A mutant of
Escherichia coli, BL21(DE3), with strongly reduced endotoxicity [
27]. After purification, α-Syn was incubated for 15 days to induce aggregation. α-Syn pffs were used at 25 μM for 24 h.
Cell and brain lysates and western blotting
BV2 cells and mouse brains were solubilized as recently described [
17]. Protein concentrations were determined using the BCA protein concentration assay as per manufacturer’s instructions (Thermo Scientific). Fifty micrograms of total proteins was separated by electrophoresis onto 4–20% SDS-PAGE gels and then transferred onto Immobilon-P membrane. Subsequently, membranes were incubated 1 h at room temperature (RT) with the following antibodies: rabbit anti-LRRK2 MJFF2 (1:500, Abcam #ab133474), rabbit anti-phospho S1292 LRRK2 (1:500, Abcam #ab203181), rabbit anti-p105/p50 (1:2000, Cell Signaling #13586S), rabbit anti-phospho S337 p50 (1:1000, Santa Cruz #101744), anti-flag HRP (1:20.000, Sigma Aldrich #A8592), anti-GFP (1:20.000, Roche #11814460001), mouse anti-PKA RIIβ (1:1000, BD Biosciences #610625), mouse anti-phospho S114 PKA RIIβ (1:1000, BD Biosciences #612550), goat anti-IL-1β (1:2000, R&D system #AF401NA), and mouse anti-GAPDH (1:10.000, Origene #TA150046). Then, membranes were incubated 1 h at RT with horseradish peroxidase (HRP)-conjugated secondary antibodies (Sigma Aldrich) and finally incubated with ECL western blot substrate (Thermo Scientific).
Co-immunoprecipitation and pull-down assays
HEK293T cells were harvested at 48 h post-transfection. For co-IP assays, cells were lysed in lysis buffer (50 mM Tris pH 7.5, 1% Triton X-100, 1 mM β-glycerophosphate, 5 mM sodium pyrophosphate, 50 mM sodium orthovanadate, 0.27 M sucrose, 1 mM EDTA) and incubated with anti-Flag M2 affinity gel (Sigma Aldrich) overnight. For pull-down assays, tagged proteins were purified using GFP-trap resin (CromoTek) and then incubated for 2 h with cell lysates containing endogenous prey protein. Immuno-complexes were washed three times with lysis buffer supplemented with 0.25 M NaCl, resuspended in sample buffer, and then subjected to immunoblotting analysis.
RNA extraction and sequencing
cAMP ELISA
cAMP levels were quantified by using cAMP Elisa kit (Enzo Life Science, #ADI-900-163) according to the manufacturer’s protocol. Specifically, BV2 cells were first treated with 2 μM LRRK2 GSK inhibitor or DMSO for 90 min and then with 30 μM forskolin for 15 min to enhance cAMP contents. Five independent samples for each condition, assayed in two technical replicates, were used for the analysis.
Statistical analysis
All quantitative data are expressed as mean ± SEM and represent at least three independent sets of experiments. Statistical significance of differences between two groups was assessed by unpaired t test or one-sample t test, while for multiple comparisons by one-way ANOVA with Tukey’s post hoc test. Data were analyzed using Prism (GraphPad).
Discussion
Accumulating evidence indicates a functional interaction between LRRK2 and PKA, although the precise molecular mechanisms of this cross-talk still need to be elucidated [
31]. In this study, using in vitro and ex vivo systems with hyperactive or inactive LRRK2 and different readouts of PKA signaling, we validated LRRK2 kinase activity as the negative regulator of PKA activation. Specifically, we provided preliminary evidence that LRRK2 controls PKA activity by acting at level of PDE4, with impact on cAMP degradation, content, and its dependent signaling in microglia cells. Interestingly, we found that LRRK2 with G2019S pathological mutation downregulates PKA activity leading to an attenuation of PKA-mediated NF-κB inhibitory signaling with consequent increment of inflammation in microglia with LRRK2 G2019S KI after α-Syn pffs priming.
The available literature supports the notion that the functional interaction between LRRK2 and PKA may be bidirectional. PKA can act upstream of LRRK2 through direct phosphorylation of distinct LRRK2 serine residues [
20,
32], but also LRRK2 can operate upstream of PKA and negatively regulate its activity [
17,
19] with apparent different mechanisms in neurons and microglia [
31]. Neuronal LRRK2 was suggested to act as an AKAP by tethering PKA signaling at specific subcellular domains independent of its kinase activity [
19]. However, a very recent study by Tozzi and colleagues hypothesized that G2019S mutation is positively associated with PKA signaling in striatal medium spiny neurons [
18], making the scenario even more complicated. In contrast, in microglia cells, LRRK2 kinase activity appears to be essential to regulate PKA activation/inactivation state. In support of this, we recently reported that LRRK2 kinase inhibition or genetic deletion activates PKA signaling [
17]. Here we collected additional evidence that LRRK2 carrying the hyperactive G2019S mutation results in a downregulation of PKA pathway, further supporting a model where is the kinase activity of LRRK2 and not the presence of the protein itself to regulate PKA signaling in microglia cells. Overall, these observations suggest that LRRK2-dependent regulation of PKA activity might be cell-type specific.
In this study, to investigate the molecular mechanism underlying LRRK2-PKA cross-talk in microglia, we started exploring LRRK2-PKA RIIβ interaction and RIIβ phosphorylation state as readouts of PKA activation state in relation to LRRK2. Auto-phosphorylation of S114-RIIβ, or S99-RIIα, by C subunits controls the interaction between RII and C subunits [
33] and the binding with AKAP [
34], all key events of the activation/inactivation state of PKA. Specifically, the allosteric activation of PKA by cAMP results in the activation of C subunits, allowing the de-phosphorylation of RII dimer by PPs and its subsequent dissociation from AKAPs. In contrast, degradation of cAMP by PDEs, re-phosphorylation of RII dimer by the C subunits, and RII-AKAP re-binding cooperate to inactivate PKA signaling [
24]. Here, by assessing LRRK2-PKA RIIβ interaction and RIIβ phosphorylation state, we found that LRRK2 G2019S interacts more with RIIβ compared to the WT protein in cells and brain lysates from LRRK2
G2019S KI mice exhibit increased phosphorylation of RIIβ compared to WT mice, suggesting that LRRK2 G2019S plays an inhibitory effect on PKA activation. In support of these results, LRRK2
G2019S KI mice displayed reduction of PKA-mediated NF-κB p50 phosphorylation, a well-established PKA phosphorylation target [
35], whereas loss of LRRK2 or its kinase inhibition results in a decrease of LRRK2-RIIβ interaction and of S114 RIIβ phosphorylation, diagnostic of an active PKA. Taken together, these findings provide additional evidence that LRRK2 kinase activity regulates PKA by affecting S114 phosphorylation and the interaction with RIIβ subunit.
To gain more insights into the molecular mechanism of this regulation, we initially tested the hypothesis that LRRK2 modulates PKA activity through direct phosphorylation of RII subunits, but we did not find any convincing evidence from in vitro kinase assays (unpublished observations). PKA is part of a multifunctional complex composed of different signaling molecules, including PPs and PDEs, which are essential for compartmentalization and regulation of PKA activation state [
36]. In particular, PDEs play a crucial role in controlling the magnitude and the duration of PKA signaling [
37]. Given this key function of PDEs and the established link between PDE4 and inflammatory responses in microglia [
38‐
41], we investigated whether LRRK2 activity affects cAMP levels in microglia. We found that cells treated with LRRK2 kinase inhibitor exhibit increased levels of cAMP compared to control cells, indicating that LRRK2 activity affects cAMP degradation. Moreover, by using phospho-S337 NF-κB p50 as readout of PKA activity, we were able to show that pharmacological manipulation of PDE4 activity impacts PKA signaling associated with NF-κB p50 phosphorylation. In addition, the combined treatment of PDE4 and LRRK2 inhibitors results in similar increase of NF-κB p50 phosphorylation compared to cells treated with rolipram alone, suggesting that LRRK2 kinase activity controls PDE4 inhibition. Future experiments will be required to elucidate the exact mechanism as to how LRRK2 regulates PDE4 activity.
Taken together, our results provide a further evidence supporting a PKA-LRRK2 axis in microglia cells, with LRRK2 kinase controlling PKA activation through PDE4; however, the molecular mechanism underlying LRRK2-PDE4 functional interaction remains to be explored. In agreement with reduced NF-κB p50 phosphorylation in the presence of hyperactive LRRK2, we found that primary microglia isolated from LRRK2
G2019S KI mice exhibit increased inflammation compared to WT microglia upon stimulation with α-Syn pffs. These observations suggest that LRRK2 G2019S, as well as all other pathological mutations that confer increased kinase activity, favors the transition of microglia toward a pro-inflammatory state, which, in turn, may result in an exacerbated inflammation and neurodegeneration in LRRK2-related PD patients. Supporting this hypothesis, LRRK2 G2019S carriers exhibit higher levels of peripheral NF-κB-dependent inflammatory cytokines compared to control subjects [
42], and rats expressing LRRK2 G2019S display enhanced reactive microglia cells and dopaminergic neurodegeneration after intracranial injection of AAV expressing α-Syn in the substantia nigra [
43].
Acknowledgements
We thank Dr. Huaibin Cai for kindly providing the GFP-PKA RIIβ plasmid. Digital droplet PCR was conducted at the CCR Genomics Core at the National Cancer Institute, NIH, Bethesda, MD 20892.