Skip to main content

Short tandem repeat loci: Application to forensic and human remains identification

  • Chapter
DNA Fingerprinting: State of the Science

Part of the book series: Progress in Systems and Control Theory ((EXS))

Summary

The short tandem repeat (STR) locus ACTBP2 (common name SE33) was analyzed for its potential use in forensic and human remains identification. PCR amplification conditions were determined, and an allele-specific ladder was generated so that discrete alleles could be scored. The allele frequency distributions were determined for both Caucasian and Black populations. The frequency data meets Hardy-Weinberg expectations, and the allele distributions were similar from one racial group to another and between ethnic groups. SE33 analysis was subsequently used to confirm the identification of human remains for the Office of the Armed Forces Medical Examiners.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Boerwinkle E, Xiong W, Fourest E, Chan L (1989) Rapid typing of tandemly repeated hypervariable loci by the polymerase chain reaction: application to the apolipoprotein B 3’ hypervariable region. Proc Nat Acad Sci USA 86: 212–216

    Article  Google Scholar 

  • Budowle B, Allen RC (1990) Discontinuous polyacrylamide gel electrophoresis of DNA fragments. In: Mathew C (ed.) Methods in Molecular Biology-Molecular Biology in Medicine, Vol. 7. Humana, London

    Google Scholar 

  • Budowle B, Chakraborty R, Giusti AM, Eisenberg AJ, Allen RC (1991) Analysis of the VNTR locus D1S80 by the PCR followed by high-resolution PAGE. Am J Hum Genet 48: 137–144

    Google Scholar 

  • Edwards A, Civitello A, Hammond HA, Caskey CT (1991) DNA typing and genetic mapping with trimeric and tetrameric tandem repeats. Am J Hum Genet 49: 746–756

    Google Scholar 

  • Edwards A, Hammond HA, Jin L, Caskey CT, Chakraborty R (1992) Genetic variation at five trimeric and tetrameric tandem repeat loci in four human population groups. Genomics 12: 241–253

    Article  Google Scholar 

  • Hochmeister MN, Budowle B, Jung J, Borer UV, Comey CT, Dirnhofer R (1991) PCR-based typing of DNA extracted from cigarette butts. Internat J Leg Med 104: 229–233

    Article  Google Scholar 

  • Horn GT, Richards B, Klinger KW (1989) Amplification of a highly polymorphic VNTR segment by the polymerase chain reaction. Nuc Acids Res 17: 2140

    Article  Google Scholar 

  • Kasai K, Nakamura Y, White R (1990) Amplification of a variable number tandem repeat (VNTR) locus (pMCT118) by the polymerase chain reaction (PCR) and its application to forensic science. J For Sci 35: 1196–1200

    Google Scholar 

  • Holland MM, Wilson M, Prenger VL, Polymeropoulos MH, Lee DA, Weedn VW, Budowle B (1993) Analysis of the STR locus ACTBP2 (SE33) for forensic and human remains identification. Am J Hum Genet, will be submitted for publication in 1993

    Google Scholar 

  • Litt M, Luty JA (1989) A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. Am J Hum Genet 44: 397–401

    Google Scholar 

  • Moos M, Gallwitz D (1983) Structure of two human beta-actin-related processed genes one of which is located next to a simple repetitive sequence. The EMBO J 2: 757–761

    Google Scholar 

  • Peake IR, Bowen D, Bignell P, Liddell MB, Sadler JE, Standen G, Bloom AL (1990) Family studies and parental diagnosis in severe von Villebrand disease by polymerase chain reaction amplification of a variable number tandem repeat region of the von Villebrand factor gene. Blood 76: 555–561

    Google Scholar 

  • Polymeropoulos MH, Rath DS, Xiao H, Merril CR (1992) Tetranucleotide repeat polymorphism at the human beta-actin-related pseudogene H-beta-Ac-psi-2 (ACTBP2). Nuc Acids Res 20: 1432

    Article  Google Scholar 

  • Saiki RK, Scharf S, Faloona F, Mullis KB, Horn GT, Erlich HA, Arnheim N (1985) Enzymatic amplification of beta-globin sequences and restriction analysis for diagnosis of sickle cell anemia. Science 230: 1350–1354

    Article  Google Scholar 

  • Saiki RK, Walsh PS, Levenson CH, Erlich HA (1988) Genetic analysis of amplified DNA with immobilized sequence-specific oligonucleotide probes. Proc Nat Acad Sci USA 86: 6230–6234

    Article  Google Scholar 

  • Sharma V, Litt M (1992) Tetranucleotide repeat polymorphism at the D21S11 locus. Hum Mol Genet 1: 67

    Article  Google Scholar 

  • Southern EM (1975) Detection of specific sequence among DNA fragments separated by gel electrophoresis. J Mol Biol 98: 503–517

    Article  Google Scholar 

  • Sullivan KM, Pope S, Gill P, Robertson JM (1992) Automated DNA profiling by fluorescent labeling of PCR products. PCR Methods and Applications, Cold Spring Harbor Laboratory 2: 34–40

    Article  Google Scholar 

  • Walsh DJ, Corey AC, Cotton RW, Forman L, Herrin GL,Jr, Word CJ, Garner DD (1992) Isolation of deoxyribonucleic acid (DNA) from saliva and forensic science samples containing saliva. J For Sci JFSCA 37: 387–395

    Google Scholar 

  • Walsh PS, Metzger DA, Higuchi R (1991) Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. BioTechniques 10: 506–513

    Google Scholar 

  • Weber JL, May PE (1989) Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am J Hum Genet 44: 388–396

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1993 Springer Basel AG

About this chapter

Cite this chapter

Holland, M.M., Fisher, D.L., Lee, D.A., Bryson, C.K., Weedn, V.W. (1993). Short tandem repeat loci: Application to forensic and human remains identification. In: Pena, S.D.J., Chakraborty, R., Epplen, J.T., Jeffreys, A.J. (eds) DNA Fingerprinting: State of the Science. Progress in Systems and Control Theory. Birkhäuser, Basel. https://doi.org/10.1007/978-3-0348-8583-6_24

Download citation

  • DOI: https://doi.org/10.1007/978-3-0348-8583-6_24

  • Publisher Name: Birkhäuser, Basel

  • Print ISBN: 978-3-7643-2906-8

  • Online ISBN: 978-3-0348-8583-6

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics