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Mildly affected patients with spinal muscular atrophy are partially protected by an increased SMN2 copy number

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Abstract

Spinal muscular atrophy (SMA) is a recessive neuromuscular disorder caused by loss of the SMN1 gene. The clinical distinction between SMA type I to IV reflects different age of onset and disease severity. SMN2, a nearly identical copy gene of SMN1, produces only 10% of full-length SMN RNA/protein and is an excellent target for a potential therapy. Several clinical trials with drugs that increase the SMN2 expression such as valproic acid and phenylbutyrate are in progress. Solid natural history data for SMA are crucial to enable a correlation between genotype and phenotype as well as the outcome of therapy. We provide genotypic and phenotypic data from 115 SMA patients with type IIIa (age of onset <3 years), type IIIb (age of onset >3 years) and rare type IV (onset >30 years). While 62% of type IIIa patients carry two or three SMN2 copies, 65% of type IIIb patients carry four or five SMN2 copies. Three type IV SMA patients had four and one had six SMN2 copies. Our data support the disease-modifying role of SMN2 leading to later onset and a better prognosis. A statistically significant correlation for ≥4 SMN2 copies with SMA type IIIb or a milder phenotype suggests that SMN2 copy number can be used as a clinical prognostic indicator in SMA patients. The additional case of a foetus with homozygous SMN1 deletion and postnatal measurement of five SMN2 copies illustrates the role of genotypic information in making informed decisions on the management and therapy of such patients.

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References

  • Andreassi C, Angelozzi C, Tiziano FD, Vitali T, De Vincenzi E, Boninsegna A, Villanova M, Bertini E, Pini A, Neri G, Brahe C (2004) Phenylbutyrate increases SMN expression in vitro: relevance for treatment of spinal muscular atrophy. Eur J Hum Genet 12:59–65

    Article  PubMed  CAS  Google Scholar 

  • Brahe C, Zappata S, Velona I, Bertini E, Servidei S, Tonali P, Neri G (1993) Presymptomatic diagnosis of SMA III by genotype analysis. Am J Med Genet 45:408–411

    Article  PubMed  CAS  Google Scholar 

  • Brahe C, Servidei S, Zappata S, Ricci E, Tonali P, Neri G (1995) Genetic homogeneity between childhood-onset and adult-onset autosomal recessive spinal muscular atrophy. Lancet 346:741–742

    Article  PubMed  CAS  Google Scholar 

  • Brahe C, Vitali T, Tiziano FD, Angelozzi C, Pinto AM, Borgo F, Moscato U, Bertini E, Mercuri E, Neri G (2005) Phenylbutyrate increases SMN gene expression in spinal muscular atrophy patients. Eur J Hum Genet 13:256–259

    Article  PubMed  CAS  Google Scholar 

  • Brichta L, Hofmann Y, Hahnen E, Siebzehnrubl FA, Raschke H, Blumcke I, Eyupoglu IY, Wirth B (2003) Valproic acid increases the SMN2 protein level: a well-known drug as a potential therapy for spinal muscular atrophy. Hum Mol Genet 12:2481–2489

    Article  PubMed  CAS  Google Scholar 

  • Brichta L, Haug K, Sun Y, Stier S, Klockgether T, Wirth B (2004) Pilot study of in-vivo effects of valproic acid on SMN gene expression in SMA carriers. Eur J Hum Genet 1(Suppl 1):5

    Google Scholar 

  • Burghes AH (1997) When is a deletion not a deletion? When it is converted. Am J Hum Genet 61:9–15

    Article  PubMed  CAS  Google Scholar 

  • Clermont O, Burlet P, Lefebvre S, Burglen L, Munnich A, Melki J (1995) SMN gene deletions in adult-onset spinal muscular atrophy. Lancet 346:1712–1713

    Article  PubMed  CAS  Google Scholar 

  • Cobben JM, van der Steege G, Grootscholten P, de Visser M, Scheffer H, Buys CH (1995) Deletions of the survival motor neuron gene in unaffected siblings of patients with spinal muscular atrophy. Am J Hum Genet 57:805–808

    PubMed  CAS  Google Scholar 

  • Cusin V, Clermont O, Gerard B, Chantereau D, Elion J (2003) Prevalence of SMN1 deletion and duplication in carrier and normal populations: implication for genetic counselling. J Med Genet 40:E39

    Article  PubMed  CAS  Google Scholar 

  • DiDonato CJ, Ingraham SE, Mendell JR, Prior TW, Lenard S, Moxley RT III, Florence J, Burghes AH (1997) Deletion and conversion in spinal muscular atrophy patients: is there a relationship to severity? Ann Neurol 41:230–237

    Article  PubMed  CAS  Google Scholar 

  • Feldkotter M, Schwarzer V, Wirth R, Wienker TF, Wirth B (2002) Quantitative analyses of SMN1 and SMN2 based on real-time lightCycler PCR: fast and highly reliable carrier testing and prediction of severity of spinal muscular atrophy. Am J Hum Genet 70:358–368

    Article  PubMed  CAS  Google Scholar 

  • Gennarelli M, Lucarelli M, Capon F, Pizzuti A, Merlini L, Angelini C, Novelli G, Dallapiccola B (1995) Survival motor neuron gene transcript analysis in muscles from spinal muscular atrophy patients. Biochem Biophys Res Commun 213:342–348

    Article  PubMed  CAS  Google Scholar 

  • Hahnen E, Forkert R, Marke C, Rudnik-Schoneborn S, Schonling J, Zerres K, Wirth B (1995) Molecular analysis of candidate genes on chromosome 5q13 in autosomal recessive spinal muscular atrophy: evidence of homozygous deletions of the SMN gene in unaffected individuals. Hum Mol Genet 4:1927–1933

    Article  PubMed  CAS  Google Scholar 

  • Hahnen E, Schonling J, Rudnik-Schoneborn S, Zerres K, Wirth B (1996) Hybrid survival motor neuron genes in patients with autosomal recessive spinal muscular atrophy: new insights into molecular mechanisms responsible for the disease. Am J Hum Genet 59:1057–1065

    PubMed  CAS  Google Scholar 

  • Helmken C, Hofmann Y, Schoenen F, Oprea G, Raschke H, Rudnik-Schoneborn S, Zerres K, Wirth B (2003) Evidence for a modifying pathway in SMA discordant families: reduced SMN level decreases the amount of its interacting partners and Htra2-beta1. Hum Genet 114:11–21

    Article  PubMed  CAS  Google Scholar 

  • Kerr DA, Nery JP, Traystman RJ, Chau BN, Hardwick JM (2000) Survival motor neuron protein modulates neuron-specific apoptosis. Proc Natl Acad Sci USA 97:13312–13317

    Article  PubMed  CAS  Google Scholar 

  • Le TT, Pham LT, Butchbach ME, Zhang HL, Monani UR, Coovert DD, Gavrilina TO, Xing L, Bassell GJ, Burghes AH (2005) SMNDelta7, the major product of the centromeric survival motor neuron (SMN2) gene, extends survival in mice with spinal muscular atrophy and associates with full-length SMN. Hum Mol Genet 14:845–857

    Article  PubMed  CAS  Google Scholar 

  • Lefebvre S, Burglen L, Reboullet S, Clermont O, Burlet P, Viollet L, Benichou B, Cruaud C, Millasseau P, Zeviani M, et al. (1995) Identification and characterization of a spinal muscular atrophy-determining gene. Cell 80:155–165

    Article  PubMed  CAS  Google Scholar 

  • Mailman MD, Heinz JW, Papp AC, Snyder PJ, Sedra MS, Wirth B, Burghes AH, Prior TW (2002) Molecular analysis of spinal muscular atrophy and modification of the phenotype by SMN2. Genet Med 4:20–26

    Article  PubMed  CAS  Google Scholar 

  • Monani UR, Sendtner M, Coovert DD, Parsons DW, Andreassi C, Le TT, Jablonka S, Schrank B, Rossol W, Prior TW, Morris GE, Burghes AH (2000) The human centromeric survival motor neuron gene (SMN2) rescues embryonic lethality in Smn(−/−) mice and results in a mouse with spinal muscular atrophy. Hum Mol Genet 9:333–339

    Article  PubMed  CAS  Google Scholar 

  • Munsat TL, Davies KE (1992) International SMA consortium meeting. (26–28 June 1992, Bonn, Germany). Neuromuscul Disord 2:423–428

    Article  PubMed  CAS  Google Scholar 

  • Ogino S, Gao S, Leonard DG, Paessler M, Wilson RB (2003) Inverse correlation between SMN1 and SMN2 copy numbers: evidence for gene conversion from SMN2 to SMN1. Eur J Hum Genet 11:275–277

    Article  PubMed  CAS  Google Scholar 

  • Pearn J (1978) Incidence, prevalence, and gene frequency studies of chronic childhood spinal muscular atrophy. J Med Genet 15:409–413

    Article  PubMed  CAS  Google Scholar 

  • Prior TW, Swoboda KJ, Scott HD, Hejmanowski AQ (2004) Homozygous SMN1 deletions in unaffected family members and modification of the phenotype by SMN2. Am J Med Genet 130A:307–310

    Article  PubMed  Google Scholar 

  • Sumner CJ, Huynh TN, Markowitz JA, Perhac JS, Hill B, Coovert DD, Schussler K, Chen X, Jarecki J, Burghes AH, Taylor JP, Fischbeck KH (2003) Valproic acid increases SMN levels in spinal muscular atrophy patient cells. Ann Neurol 54:647–654

    Article  PubMed  CAS  Google Scholar 

  • van der Steege G, Grootscholten PM, Cobben JM, Zappata S, Scheffer H, den Dunnen JT, van Ommen GJ, Brahe C, Buys CH (1996) Apparent gene conversions involving the SMN gene in the region of the spinal muscular atrophy locus on chromosome 5. Am J Hum Genet 59:834–838

    PubMed  Google Scholar 

  • Vitali T, Sossi V, Tiziano F, Zappata S, Giuli A, Paravatou-Petsotas M, Neri G, Brahe C (1999) Detection of the survival motor neuron (SMN) genes by FISH: further evidence for a role for SMN2 in the modulation of disease severity in SMA patients. Hum Mol Genet 8:2525–2532

    Article  PubMed  CAS  Google Scholar 

  • Vyas S, Bechade C, Riveau B, Downward J, Triller A (2002) Involvement of survival motor neuron (SMN) protein in cell death. Hum Mol Genet 11:2751–2764

    Article  PubMed  CAS  Google Scholar 

  • Wang CH, Xu J, Carter TA, Ross BM, Dominski MK, Bellcross CA, Penchaszadeh GK, Munsat TL, Gilliam TC (1996) Characterization of survival motor neuron (SMNT) gene deletions in asymptomatic carriers of spinal muscular atrophy. Hum Mol Genet 5:359–365

    Article  PubMed  CAS  Google Scholar 

  • Wirth B (2000) An update of the mutation spectrum of the survival motor neuron gene (SMN1) in autosomal recessive spinal muscular atrophy (SMA). Hum Mutat 15:228–237

    Article  PubMed  CAS  Google Scholar 

  • Wirth B (2002) Spinal muscular atrophy: state-of-the-art and therapeutic perspectives. Amyotroph Lateral Scler Other Motor Neuron Disord 3:87–95

    Article  PubMed  CAS  Google Scholar 

  • Wirth B, Hahnen E, Morgan K, DiDonato CJ, Dadze A, Rudnik-Schoneborn S, Simard LR, Zerres K, Burghes AH (1995) Allelic association and deletions in autosomal recessive proximal spinal muscular atrophy: association of marker genotype with disease severity and candidate cDNAs. Hum Mol Genet 4:1273–1284

    Article  PubMed  CAS  Google Scholar 

  • Wirth B, Schmidt T, Hahnen E, Rudnik-Schoneborn S, Krawczak M, Muller-Myhsok B, Schonling J, Zerres K (1997) De novo rearrangements found in 2% of index patients with spinal muscular atrophy: mutational mechanisms, parental origin, mutation rate, and implications for genetic counseling. Am J Hum Genet 61:1102–1111

    Article  PubMed  CAS  Google Scholar 

  • Wirth B, Herz M, Wetter A, Moskau S, Hahnen E, Rudnik-Schoneborn S, Wienker T, Zerres K (1999) Quantitative analysis of survival motor neuron copies: identification of subtle SMN1 mutations in patients with spinal muscular atrophy, genotype–phenotype correlation, and implications for genetic counseling. Am J Hum Genet 64:1340–1356

    Article  PubMed  CAS  Google Scholar 

  • Zerres K, Rudnik-Schoneborn S (1995) Natural history in proximal spinal muscular atrophy. Clinical analysis of 445 patients and suggestions for a modification of existing classifications. Arch Neurol 52:518–523

    PubMed  CAS  Google Scholar 

  • Zerres K, Rudnik-Schoneborn S, Forkert R, Wirth B (1995) Genetic basis of adult-onset spinal muscular atrophy. Lancet 346:1162

    Article  PubMed  CAS  Google Scholar 

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Acknowledgement

We are grateful to all SMA families and clinicians who contributed to this work. We are grateful to Yun Li for statistical advice. This study has been supported by grants from the Deutsche Forschungsgemeinschaft, Families of SMA and Center for Molecular Medicine Cologne. HL is member of the German network on muscular dystrophies (MD-NET; 01GM0302), funded by the German Ministry of Education and Research.

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Correspondence to B. Wirth.

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Database: SMN1—OMIM: 600354; GeneBank: U18423, SMN2—OMIM: 601627: GeneBank: NM_022875

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Wirth, B., Brichta, L., Schrank, B. et al. Mildly affected patients with spinal muscular atrophy are partially protected by an increased SMN2 copy number. Hum Genet 119, 422–428 (2006). https://doi.org/10.1007/s00439-006-0156-7

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  • DOI: https://doi.org/10.1007/s00439-006-0156-7

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