Skip to main content
Erschienen in: Archives of Virology 10/2008

01.10.2008 | Annotated Sequence Record

Six novel begomoviruses infecting tomato and associated weeds in Southeastern Brazil

verfasst von: Gloria P. Castillo-Urquiza, José Evando A. Beserra Jr., Fernanda P. Bruckner, Alison T. M. Lima, Arvind Varsani, Poliane Alfenas-Zerbini, F. Murilo Zerbini

Erschienen in: Archives of Virology | Ausgabe 10/2008

Einloggen, um Zugang zu erhalten

Abstract

The incidence of tomato-infecting begomoviruses has sharply increased in Brazil following the introduction of the B biotype of the whitefly vector in the early 1990s. Five definitive species and six tentative species have been described since then. Here, we report the detection of members of an additional six novel species, three in tomato and three infecting weeds that are commonly associated with tomato fields: Blainvillea rhomboidea, Sida rhombifolia and Sida micrantha. Tomato and weed samples were collected in two major tomato-growing regions of southeastern Brazil in 2005 and 2007. Two of the novel viruses were present in tomato plants collected in Paty do Alferes, Rio de Janeiro state. Three novel viruses were present in weed samples collected in Coimbra, Minas Gerais state. One virus was present in tomato samples collected at both locations. Genome features indicate that all six species are typical New World, bipartite begomoviruses. However, the viruses belonging to two of the novel species did not cluster with the Brazilian viruses in a phylogenetic tree. These species could represent a distinct lineage of New World begomoviruses, found in Brazil for the first time.
Anhänge
Nur mit Berechtigung zugänglich
Literatur
1.
Zurück zum Zitat Andrade EC, Manhani GG, Alfenas PF, Calegario RF, Fontes EPB, Zerbini FM (2006) Tomato yellow spot virus, a tomato-infecting begomovirus from Brazil with a closer relationship to viruses from Sida sp., forms pseudorecombinants with begomoviruses from tomato but not from Sida. J Gen Virol 87:3687–3696PubMedCrossRef Andrade EC, Manhani GG, Alfenas PF, Calegario RF, Fontes EPB, Zerbini FM (2006) Tomato yellow spot virus, a tomato-infecting begomovirus from Brazil with a closer relationship to viruses from Sida sp., forms pseudorecombinants with begomoviruses from tomato but not from Sida. J Gen Virol 87:3687–3696PubMedCrossRef
2.
Zurück zum Zitat Calegario RF, Ferreira SS, Andrade EC, Zerbini FM (2007) Characterization of Tomato yellow spot virus, (ToYSV), a novel tomato-infecting begomovirus from Brazil. Braz J Agric Res 42:1335–1343 Calegario RF, Ferreira SS, Andrade EC, Zerbini FM (2007) Characterization of Tomato yellow spot virus, (ToYSV), a novel tomato-infecting begomovirus from Brazil. Braz J Agric Res 42:1335–1343
3.
Zurück zum Zitat Dellaporta SL, Wood J, Hicks JB (1983) A plant DNA minipreparation: Version II. Plant Mol Biol Report 1:19–21CrossRef Dellaporta SL, Wood J, Hicks JB (1983) A plant DNA minipreparation: Version II. Plant Mol Biol Report 1:19–21CrossRef
4.
Zurück zum Zitat Faria JC, Souza-Dias JAC, Slack S, Maxwell DP (1997) A new geminivirus associated with tomato in the State of São Paulo, Brazil. Plant Dis 81:423CrossRef Faria JC, Souza-Dias JAC, Slack S, Maxwell DP (1997) A new geminivirus associated with tomato in the State of São Paulo, Brazil. Plant Dis 81:423CrossRef
5.
Zurück zum Zitat Faria JC, Maxwell DP (1999) Variability in geminivirus isolates associated with Phaseolus spp. in Brazil. Phytopathol 89:262–268CrossRef Faria JC, Maxwell DP (1999) Variability in geminivirus isolates associated with Phaseolus spp. in Brazil. Phytopathol 89:262–268CrossRef
6.
Zurück zum Zitat Fauquet CM, Briddon RW, Brown JK, Moriones E, Stanley J, Zerbini FM, Zhou X (2008) Geminivirus strain demarcation and nomenclature. Arch Virol 153:783–821PubMedCrossRef Fauquet CM, Briddon RW, Brown JK, Moriones E, Stanley J, Zerbini FM, Zhou X (2008) Geminivirus strain demarcation and nomenclature. Arch Virol 153:783–821PubMedCrossRef
7.
Zurück zum Zitat Fernandes AV, Galvão RM, Machado JJ, Zerbini FM, Fontes EPB (1999) Cloning and molecular characterization of A components of two new Sida rhombifolia-infecting geminiviruses. Virus Rev Res 4:148 Fernandes AV, Galvão RM, Machado JJ, Zerbini FM, Fontes EPB (1999) Cloning and molecular characterization of A components of two new Sida rhombifolia-infecting geminiviruses. Virus Rev Res 4:148
8.
Zurück zum Zitat Fernandes FR, Albuquerque LC, Giordano LB, Boiteux LS, Ávila AC, Inoue-Nagata AK (2008) Diversity and prevalence of Brazilian bipartite begomovirus species associated to tomatoes. Virus Genes 36:251–258PubMedCrossRef Fernandes FR, Albuquerque LC, Giordano LB, Boiteux LS, Ávila AC, Inoue-Nagata AK (2008) Diversity and prevalence of Brazilian bipartite begomovirus species associated to tomatoes. Virus Genes 36:251–258PubMedCrossRef
9.
Zurück zum Zitat Fernandes JJ, Carvalho MG, Andrade EC, Brommonschenkel SH, Fontes EPB, Zerbini FM (2006) Biological and molecular properties of Tomato rugose mosaic virus (ToRMV), a new tomato-infecting begomovirus from Brazil. Plant Path 55:513–522CrossRef Fernandes JJ, Carvalho MG, Andrade EC, Brommonschenkel SH, Fontes EPB, Zerbini FM (2006) Biological and molecular properties of Tomato rugose mosaic virus (ToRMV), a new tomato-infecting begomovirus from Brazil. Plant Path 55:513–522CrossRef
10.
Zurück zum Zitat Ferreira SS, Fontes EPB, Zerbini FM (2005) Occurrence of begomoviruses and absence of satellite DNAs in weeds and tomato plants in Southeastern Brazil. In: 34th Annual Meeting of the Brazilian Society for Biochemistry and Molecular Biology (Abstracts on CD-Rom), Águas de Lindóia Ferreira SS, Fontes EPB, Zerbini FM (2005) Occurrence of begomoviruses and absence of satellite DNAs in weeds and tomato plants in Southeastern Brazil. In: 34th Annual Meeting of the Brazilian Society for Biochemistry and Molecular Biology (Abstracts on CD-Rom), Águas de Lindóia
11.
Zurück zum Zitat Inoue-Nagata AK, Albuquerque LC, Rocha WB, Nagata T (2004) A simple method for cloning the complete begomovirus genome using the bacteriophage phi 29 DNA polymerase. J Virol Methods 116:209–211PubMedCrossRef Inoue-Nagata AK, Albuquerque LC, Rocha WB, Nagata T (2004) A simple method for cloning the complete begomovirus genome using the bacteriophage phi 29 DNA polymerase. J Virol Methods 116:209–211PubMedCrossRef
12.
Zurück zum Zitat Jovel J, Reski G, Rothenstein D, Ringel M, Frischmuth T, Jeske H (2004) Sida micrantha mosaic is associated with a complex infection of begomoviruses different from Abutilon mosaic virus. Arch Virol 149:829–841PubMedCrossRef Jovel J, Reski G, Rothenstein D, Ringel M, Frischmuth T, Jeske H (2004) Sida micrantha mosaic is associated with a complex infection of begomoviruses different from Abutilon mosaic virus. Arch Virol 149:829–841PubMedCrossRef
13.
Zurück zum Zitat Ribeiro SG, Ávila AC, Bezerra IC, Fernandes JJ, Faria JC, Lima MF, Gilbertson RL, Zambolim EM, Zerbini FM (1998) Widespread occurrence of tomato geminiviruses in Brazil, associated with the new biotype of the whitefly vector. Plant Dis 82:830CrossRef Ribeiro SG, Ávila AC, Bezerra IC, Fernandes JJ, Faria JC, Lima MF, Gilbertson RL, Zambolim EM, Zerbini FM (1998) Widespread occurrence of tomato geminiviruses in Brazil, associated with the new biotype of the whitefly vector. Plant Dis 82:830CrossRef
14.
Zurück zum Zitat Ribeiro SG, Ambrozevicius LP, Ávila AC, Bezerra IC, Calegario RF, Fernandes JJ, Lima MF, Mello RN, Rocha H, Zerbini FM (2003) Distribution and genetic diversity of tomato-infecting begomoviruses in Brazil. Arch Virol 148:281–295PubMedCrossRef Ribeiro SG, Ambrozevicius LP, Ávila AC, Bezerra IC, Calegario RF, Fernandes JJ, Lima MF, Mello RN, Rocha H, Zerbini FM (2003) Distribution and genetic diversity of tomato-infecting begomoviruses in Brazil. Arch Virol 148:281–295PubMedCrossRef
15.
Zurück zum Zitat Ribeiro SG, Martin DP, Lacorte C, Simões IC, Orlandini DRS, Inoue-Nagata AK (2007) Molecular and biological characterization of Tomato chlorotic mottle virus suggests that recombination underlies the evolution and diversity of Brazilian tomato begomoviruses. Phytopathology 97:702–711CrossRef Ribeiro SG, Martin DP, Lacorte C, Simões IC, Orlandini DRS, Inoue-Nagata AK (2007) Molecular and biological characterization of Tomato chlorotic mottle virus suggests that recombination underlies the evolution and diversity of Brazilian tomato begomoviruses. Phytopathology 97:702–711CrossRef
16.
Zurück zum Zitat Rojas MR, Gilbertson RL, Russell DR, Maxwell DP (1993) Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminiviruses. Plant Dis 77:340–347 Rojas MR, Gilbertson RL, Russell DR, Maxwell DP (1993) Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminiviruses. Plant Dis 77:340–347
17.
Zurück zum Zitat Rojas MR, Hagen C, Lucas WJ, Gilbertson RL (2005) Exploiting chinks in the plant’s armor: evolution and emergence of geminiviruses. Annu Rev Phytopathol 43:361–394PubMedCrossRef Rojas MR, Hagen C, Lucas WJ, Gilbertson RL (2005) Exploiting chinks in the plant’s armor: evolution and emergence of geminiviruses. Annu Rev Phytopathol 43:361–394PubMedCrossRef
18.
Zurück zum Zitat Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599PubMedCrossRef Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599PubMedCrossRef
19.
Zurück zum Zitat Zerbini FM, Andrade EC, Barros DR, Ferreira SS, Lima ATM, Alfenas PF, Mello RN (2005) Traditional and novel strategies for geminivirus management in Brazil. Aust Plant Pathol 34:475–480CrossRef Zerbini FM, Andrade EC, Barros DR, Ferreira SS, Lima ATM, Alfenas PF, Mello RN (2005) Traditional and novel strategies for geminivirus management in Brazil. Aust Plant Pathol 34:475–480CrossRef
Metadaten
Titel
Six novel begomoviruses infecting tomato and associated weeds in Southeastern Brazil
verfasst von
Gloria P. Castillo-Urquiza
José Evando A. Beserra Jr.
Fernanda P. Bruckner
Alison T. M. Lima
Arvind Varsani
Poliane Alfenas-Zerbini
F. Murilo Zerbini
Publikationsdatum
01.10.2008
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 10/2008
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-008-0172-0

Weitere Artikel der Ausgabe 10/2008

Archives of Virology 10/2008 Zur Ausgabe

Leitlinien kompakt für die Innere Medizin

Mit medbee Pocketcards sicher entscheiden.

Seit 2022 gehört die medbee GmbH zum Springer Medizin Verlag

Update Innere Medizin

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.