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Erschienen in: Archives of Virology 6/2009

01.06.2009 | Brief Report

Coleus blumei viroid 6: a new tentative member of the genus Coleviroid derived from natural genome shuffling

verfasst von: Wan-Ying Hou, Shi-Fang Li, Zu-Jian Wu, Dong-Mei Jiang, Teruo Sano

Erschienen in: Archives of Virology | Ausgabe 6/2009

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Abstract

Coleus blumei can be infected by several viroids of the genus Coleviroid. One year after detecting a mixed infection of coleus blumei viroid 1 (CbVd-1) and 5 (CbVd-5) in coleus seedlings inoculated with these two viroids, we found an additional viroid-like RNA. Sequence analysis revealed a viroid of 342 nucleotides that contains the central conserved region of coleviroids and is a chimera of the left half of CbVd-3 and the right half of CbVd-5. This new viroid, tentatively referred to as coleus blumei viroid 6 (CbVd-6), appears to have arisen from a natural recombination event or genome shuffling.
Literatur
1.
Zurück zum Zitat Daros JA, Elena SF, Flores R (2006) Viroids: an Ariadne’s thread into the RNA labyrinth. EMBO Rep 7:593–598PubMedCrossRef Daros JA, Elena SF, Flores R (2006) Viroids: an Ariadne’s thread into the RNA labyrinth. EMBO Rep 7:593–598PubMedCrossRef
2.
Zurück zum Zitat Diener TO (1987) The viroids. Plenum Press, New York Diener TO (1987) The viroids. Plenum Press, New York
3.
Zurück zum Zitat Diener TO (2001) The viroid: biological oddity or evolutionary fossil. Adv Virus Res 57:137–184PubMedCrossRef Diener TO (2001) The viroid: biological oddity or evolutionary fossil. Adv Virus Res 57:137–184PubMedCrossRef
4.
Zurück zum Zitat Fekih Hassen I, Massart S, Motard J, Roussel S, Parisi O, Kummert J, Fakhfakh H, Marrakchi M, Perreault JP, Jijakli MH (2007) Molecular features of new Peach Latent Mosaic Viroid variants suggest that recombination may have contributed to the evolution of this infectious RNA. Virology 360:50–57PubMedCrossRef Fekih Hassen I, Massart S, Motard J, Roussel S, Parisi O, Kummert J, Fakhfakh H, Marrakchi M, Perreault JP, Jijakli MH (2007) Molecular features of new Peach Latent Mosaic Viroid variants suggest that recombination may have contributed to the evolution of this infectious RNA. Virology 360:50–57PubMedCrossRef
5.
Zurück zum Zitat Flores R, Randles JW, Owens RA, Bar-Joseph M, Diener TO (2005) Subviral agents: viroids. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy. Eighth report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, pp 1147–1161 Flores R, Randles JW, Owens RA, Bar-Joseph M, Diener TO (2005) Subviral agents: viroids. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy. Eighth report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, pp 1147–1161
6.
Zurück zum Zitat Fonseca MEN, Boiteux LS, Singh RP, Kitajima EW (1989) A small viroid in Coleus species from Brazil. Fitopatol Bras 14:94–96 Fonseca MEN, Boiteux LS, Singh RP, Kitajima EW (1989) A small viroid in Coleus species from Brazil. Fitopatol Bras 14:94–96
7.
Zurück zum Zitat Hadidi A, Semancik JS, Flores R, Randles JW (2003) Viroids. In: Semancik JS (ed) Pathogenesis. CSIRO Publishing, Collingwood, pp 61–65 Hadidi A, Semancik JS, Flores R, Randles JW (2003) Viroids. In: Semancik JS (ed) Pathogenesis. CSIRO Publishing, Collingwood, pp 61–65
8.
Zurück zum Zitat Hammond R, Smith DR, Diener TO (1989) Nucleotide sequence and proposed secondary structure of Columnea latent viroid: a natural mosaic of viroid sequences. Nucl Acids Res 17:10083–10094PubMedCrossRef Hammond R, Smith DR, Diener TO (1989) Nucleotide sequence and proposed secondary structure of Columnea latent viroid: a natural mosaic of viroid sequences. Nucl Acids Res 17:10083–10094PubMedCrossRef
9.
Zurück zum Zitat Hou WY, Sano T, Li SF, Li F, Li L, Wu ZJ (2009) Identification and characterization of a new Coleviroid (CbVd-5). Arch Virol 154:315–320PubMedCrossRef Hou WY, Sano T, Li SF, Li F, Li L, Wu ZJ (2009) Identification and characterization of a new Coleviroid (CbVd-5). Arch Virol 154:315–320PubMedCrossRef
10.
Zurück zum Zitat Ishiguro A, Sano T, Harada Y (1996) Nucleotide sequence and host range of a coleus viroid isolated from coleus (Coleus blumei Benth) in Japan. Ann Phytopathol Soc Jpn 62:84–86 Ishiguro A, Sano T, Harada Y (1996) Nucleotide sequence and host range of a coleus viroid isolated from coleus (Coleus blumei Benth) in Japan. Ann Phytopathol Soc Jpn 62:84–86
11.
Zurück zum Zitat Keese P, Symons RH (1985) Domains in viroids: evidence of intermolecular RNA rearrangements and their contribution to viroid evolution. Proc Natl Acad Sci USA 82:4582–4586PubMedCrossRef Keese P, Symons RH (1985) Domains in viroids: evidence of intermolecular RNA rearrangements and their contribution to viroid evolution. Proc Natl Acad Sci USA 82:4582–4586PubMedCrossRef
12.
Zurück zum Zitat Kofalvi S, Marcos JF, Canizares MC, Pallas V, Candresse T (1997) Hop stunt viroid (HSVd) sequence variants from Prunus species: evidence for recombination between HSVd isolates. J Gen Virol 78:3177–3186PubMed Kofalvi S, Marcos JF, Canizares MC, Pallas V, Candresse T (1997) Hop stunt viroid (HSVd) sequence variants from Prunus species: evidence for recombination between HSVd isolates. J Gen Virol 78:3177–3186PubMed
13.
Zurück zum Zitat Li SF, Onodera S, Sano T (1995) Gene diagnosis of viroids: comparisons of return-PAGE and hybridization using DIG-labelled DNA and RNA probes for practical diagnosis of hop stunt, citrus exocortis and apple scar skin viroids in their natural host plants. Ann Phytopathol Soc Jpn 61:381–390 Li SF, Onodera S, Sano T (1995) Gene diagnosis of viroids: comparisons of return-PAGE and hybridization using DIG-labelled DNA and RNA probes for practical diagnosis of hop stunt, citrus exocortis and apple scar skin viroids in their natural host plants. Ann Phytopathol Soc Jpn 61:381–390
14.
Zurück zum Zitat Li SF, Su Q, Guo R (2006) First report of Coleus blumei viroid from coleus in China. Plant Pathol 55:565CrossRef Li SF, Su Q, Guo R (2006) First report of Coleus blumei viroid from coleus in China. Plant Pathol 55:565CrossRef
15.
Zurück zum Zitat Machida S, Shibuya M, Sano T (2008) Enrichment of viroid small RNAs by hybridization selection using biotinylated RNA transcripts to analyze viroid induced RNA silencing. J Gen Plant Pathol 74:203–207CrossRef Machida S, Shibuya M, Sano T (2008) Enrichment of viroid small RNAs by hybridization selection using biotinylated RNA transcripts to analyze viroid induced RNA silencing. J Gen Plant Pathol 74:203–207CrossRef
16.
Zurück zum Zitat Matousek J, Orctova L, Ptaek J, Patzak J, Ddi P, Steger G, Riesner D (2007) Experimental transmission of Pospiviroid populations to weed species characteristic of potato and hop fields. J Virol 81:11891–11899PubMedCrossRef Matousek J, Orctova L, Ptaek J, Patzak J, Ddi P, Steger G, Riesner D (2007) Experimental transmission of Pospiviroid populations to weed species characteristic of potato and hop fields. J Virol 81:11891–11899PubMedCrossRef
17.
Zurück zum Zitat Rezaian MA (1990) Australian grapevine viroid—evidence for extensive recombination between viroids. Nucl Acids Res 18:1813–1818PubMedCrossRef Rezaian MA (1990) Australian grapevine viroid—evidence for extensive recombination between viroids. Nucl Acids Res 18:1813–1818PubMedCrossRef
18.
Zurück zum Zitat Sano T, Ishiguro A (1998) Viability and pathogenicity of intersubgroup viroid chimeras suggest possible involvement of the terminal right region in replication. Virology 240:238–244PubMedCrossRef Sano T, Ishiguro A (1998) Viability and pathogenicity of intersubgroup viroid chimeras suggest possible involvement of the terminal right region in replication. Virology 240:238–244PubMedCrossRef
19.
Zurück zum Zitat Sano T, Candresse T, Hammond RW, Diener TO, Owens RA (1992) Identification of multiple structural domains regulating viroid pathogenicity. Proc Natl Acad Sci USA 89:10104–10108PubMedCrossRef Sano T, Candresse T, Hammond RW, Diener TO, Owens RA (1992) Identification of multiple structural domains regulating viroid pathogenicity. Proc Natl Acad Sci USA 89:10104–10108PubMedCrossRef
20.
Zurück zum Zitat Sano T, Isono S, Matsuki K, Kawaguchi-Ito Y, Tanaka K, Kondo K, Iijima A, Bar-Joseph M (2009) Vegetative propagation and its possible role as a genetic bottleneck in the shaping of the apple fruit crinkle viroid populations in apple and hop plants. Virus Genes 37:298–303CrossRef Sano T, Isono S, Matsuki K, Kawaguchi-Ito Y, Tanaka K, Kondo K, Iijima A, Bar-Joseph M (2009) Vegetative propagation and its possible role as a genetic bottleneck in the shaping of the apple fruit crinkle viroid populations in apple and hop plants. Virus Genes 37:298–303CrossRef
21.
Zurück zum Zitat Schumacher J, Randles JW (1983) A two-dimensional electrophoretic technique for the detection of circular viroids and virusoids. Anal Biochem 135:288–295PubMedCrossRef Schumacher J, Randles JW (1983) A two-dimensional electrophoretic technique for the detection of circular viroids and virusoids. Anal Biochem 135:288–295PubMedCrossRef
22.
Zurück zum Zitat Singh RP, Boucher A, Singh A (1991) High incidence of transmission and occurrence of viroid in commercial seeds of Coleus in Canada. Plant Dis 75:184–187 Singh RP, Boucher A, Singh A (1991) High incidence of transmission and occurrence of viroid in commercial seeds of Coleus in Canada. Plant Dis 75:184–187
23.
Zurück zum Zitat Spieker RL (1996) A new sequence variant of Coleus blumei viroid 1 from the Coleus blumei cultivar “Rainbow Gold”. Arch Virol 141:2153–2161PubMedCrossRef Spieker RL (1996) A new sequence variant of Coleus blumei viroid 1 from the Coleus blumei cultivar “Rainbow Gold”. Arch Virol 141:2153–2161PubMedCrossRef
24.
Zurück zum Zitat Spieker RL, Haas B, Charng Y, Freimuller K, Sanger HL (1990) Primary and secondary structure of a new viroid ‘species’ (CbVd 1) present in the Coleus blumei cultivar ‘Bienvenue’. Nucl Acids Res 18:3998PubMedCrossRef Spieker RL, Haas B, Charng Y, Freimuller K, Sanger HL (1990) Primary and secondary structure of a new viroid ‘species’ (CbVd 1) present in the Coleus blumei cultivar ‘Bienvenue’. Nucl Acids Res 18:3998PubMedCrossRef
25.
Zurück zum Zitat Spieker RL (1996) In vitro-generated ‘inverse’ chimeric Coleus blumei viroids evolve in vivo into infectious RNA replicons. J Gen Virol 77:2839–2846PubMedCrossRef Spieker RL (1996) In vitro-generated ‘inverse’ chimeric Coleus blumei viroids evolve in vivo into infectious RNA replicons. J Gen Virol 77:2839–2846PubMedCrossRef
26.
Zurück zum Zitat Su Q, Li SF, Sano T, Guo R, Cheng ZM (2006) Detection and molecular characterization of coleus blumei viroid in China. Acta Phytopathologica Sinica 36:226–231 Su Q, Li SF, Sano T, Guo R, Cheng ZM (2006) Detection and molecular characterization of coleus blumei viroid in China. Acta Phytopathologica Sinica 36:226–231
Metadaten
Titel
Coleus blumei viroid 6: a new tentative member of the genus Coleviroid derived from natural genome shuffling
verfasst von
Wan-Ying Hou
Shi-Fang Li
Zu-Jian Wu
Dong-Mei Jiang
Teruo Sano
Publikationsdatum
01.06.2009
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 6/2009
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-009-0388-7

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