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Erschienen in: Archives of Virology 11/2010

01.11.2010 | Annotated Sequence Record

Complete nucleotide sequence of Velvet tobacco mottle virus isolate K1

verfasst von: K. Arthur, S. Dogra, J. W. Randles

Erschienen in: Archives of Virology | Ausgabe 11/2010

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Abstract

Velvet tobacco mottle virus (VTMoV) infects the native Australian plant Nicotiana velutina, which is endemic to central Australia. This virus is included in the genus Sobemovirus based on virion morphology and serological relationships. We report here the full genome sequence of VTMoV, attained using a genome-walking strategy with both degenerate and specific primers. This sequence confirms that VTMoV is a sobemovirus, with the same open reading frame (ORF) organisation as other described sobemoviruses. The VTMoV sequence is closest to those sobemoviruses isolated from monocotyledonous plants, although the narrow host range of VTMoV is limited to dicotyledonous plants.
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Literatur
1.
Zurück zum Zitat Randles JW, Davies C, Hatta T, Gould AR, Francki RIB (1981) Studies on encapsidated viroid-like RNA I. Characterization of Velvet tobacco mottle virus. Virology 108:111–122CrossRefPubMed Randles JW, Davies C, Hatta T, Gould AR, Francki RIB (1981) Studies on encapsidated viroid-like RNA I. Characterization of Velvet tobacco mottle virus. Virology 108:111–122CrossRefPubMed
2.
Zurück zum Zitat Greber RS, Randles JW (1986) Solanum nodiflorum mottle virus. AAB Desc Plant Viruses 318 Greber RS, Randles JW (1986) Solanum nodiflorum mottle virus. AAB Desc Plant Viruses 318
3.
Zurück zum Zitat Gibb KS, Randles JW (1988) Studies on the transmission of Velvet tobacco mottle virus by the mirid, Cyrtopeltis nicotianae. Ann Appl Biol 112:427–437CrossRef Gibb KS, Randles JW (1988) Studies on the transmission of Velvet tobacco mottle virus by the mirid, Cyrtopeltis nicotianae. Ann Appl Biol 112:427–437CrossRef
4.
Zurück zum Zitat Francki RIB, Grivell CJ, Gibb KS (1986) Isolation of Velvet tobacco mottle virus capable of replication with and without viroid-like RNA. Virology 148:281–384CrossRef Francki RIB, Grivell CJ, Gibb KS (1986) Isolation of Velvet tobacco mottle virus capable of replication with and without viroid-like RNA. Virology 148:281–384CrossRef
5.
Zurück zum Zitat Hull R (1977) The stabilization of the particles of turnip rosette virus and of other members of the southern bean mosaic virus group. Virology 79:58–66CrossRefPubMed Hull R (1977) The stabilization of the particles of turnip rosette virus and of other members of the southern bean mosaic virus group. Virology 79:58–66CrossRefPubMed
6.
Zurück zum Zitat Veerisetty V, Sehgal OP (1980) Proteinase-K sensitive factor essential for the infectiviy of Southern bean mosaic virus ribonucleic acid. Phytopathology 70:282–284 Veerisetty V, Sehgal OP (1980) Proteinase-K sensitive factor essential for the infectiviy of Southern bean mosaic virus ribonucleic acid. Phytopathology 70:282–284
7.
Zurück zum Zitat Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23:2947–2948CrossRefPubMed Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23:2947–2948CrossRefPubMed
8.
Zurück zum Zitat Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acid Symp Ser 41:95–98 Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acid Symp Ser 41:95–98
9.
Zurück zum Zitat Ishikawa J, Hotta K (1999) FramePlot: a new implementation of the frame analysis for predicting protein-coding regions in bacterial DNA with a high G+C content. FEMS Microbiol Lett 174:251–253CrossRefPubMed Ishikawa J, Hotta K (1999) FramePlot: a new implementation of the frame analysis for predicting protein-coding regions in bacterial DNA with a high G+C content. FEMS Microbiol Lett 174:251–253CrossRefPubMed
10.
Zurück zum Zitat Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhand Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402CrossRefPubMed Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhand Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402CrossRefPubMed
11.
Zurück zum Zitat Kumar S, Dudley J, Nei M, Tamura K (2008) MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Briefings Bioinformatics 9:299–306CrossRef Kumar S, Dudley J, Nei M, Tamura K (2008) MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Briefings Bioinformatics 9:299–306CrossRef
12.
Zurück zum Zitat Meier M, Truve E (2007) Sobemoviruses possess a common CfMV-like genomic organisation. Arch Virol 152:635–640CrossRefPubMed Meier M, Truve E (2007) Sobemoviruses possess a common CfMV-like genomic organisation. Arch Virol 152:635–640CrossRefPubMed
13.
Zurück zum Zitat McGavin WJ, MacFarlane SA (2009) Rubus chlorotic mottle virus, a new sobemovirus infecting raspberry and bramble. Virus Res 139:10–13CrossRefPubMed McGavin WJ, MacFarlane SA (2009) Rubus chlorotic mottle virus, a new sobemovirus infecting raspberry and bramble. Virus Res 139:10–13CrossRefPubMed
15.
Zurück zum Zitat Meier M, Paves H, Olspert A, Tamm T, Truve E (2006) P1 protein of cocksfoot mottle virus is indispensable for the systemic spread of the virus. Virus Genes 32:321–326CrossRefPubMed Meier M, Paves H, Olspert A, Tamm T, Truve E (2006) P1 protein of cocksfoot mottle virus is indispensable for the systemic spread of the virus. Virus Genes 32:321–326CrossRefPubMed
16.
Zurück zum Zitat Bonneau C, Brugidou C, Chen L, Beachy RN, Fauquet C (1998) Expression of the Rice yellow mottle virus P1 protein in vitro and in vivo and its Involvement in virus spread. Virology 244:79–86CrossRefPubMed Bonneau C, Brugidou C, Chen L, Beachy RN, Fauquet C (1998) Expression of the Rice yellow mottle virus P1 protein in vitro and in vivo and its Involvement in virus spread. Virology 244:79–86CrossRefPubMed
17.
Zurück zum Zitat Sarmiento C, Gomez E, Meier M, Kavanagh TA, Truve E (2007) Cocksfoot mottle virus P1 suppresses RNA silencing in Nicotiana benthamiana and Nicotiana tabacum. Virus Res 123:95–99CrossRefPubMed Sarmiento C, Gomez E, Meier M, Kavanagh TA, Truve E (2007) Cocksfoot mottle virus P1 suppresses RNA silencing in Nicotiana benthamiana and Nicotiana tabacum. Virus Res 123:95–99CrossRefPubMed
18.
Zurück zum Zitat Voinnet O, Pinto YM, Baulcombe DC (1999) Suppression of gene silencing: A general strategy used by diverse DNA and RNA viruses of plants. Proc Natl Acad Sci USA 96:14147–14152CrossRefPubMed Voinnet O, Pinto YM, Baulcombe DC (1999) Suppression of gene silencing: A general strategy used by diverse DNA and RNA viruses of plants. Proc Natl Acad Sci USA 96:14147–14152CrossRefPubMed
19.
Zurück zum Zitat Randles JW, Francki RIB (1986) Velvet tobacco mottle virus. AAB Descriptions of Plant Viruses 317 Randles JW, Francki RIB (1986) Velvet tobacco mottle virus. AAB Descriptions of Plant Viruses 317
20.
Zurück zum Zitat Makinen K, Naess V, Tamm T, Truve E, Aaspollu A, Saarma M (1995) The putative replicase of the cocksfoot mottle sobemovirus is translated as a part of the polyprotein by -1 ribosomal frameshift. Virology 207:566–571CrossRefPubMed Makinen K, Naess V, Tamm T, Truve E, Aaspollu A, Saarma M (1995) The putative replicase of the cocksfoot mottle sobemovirus is translated as a part of the polyprotein by -1 ribosomal frameshift. Virology 207:566–571CrossRefPubMed
21.
Zurück zum Zitat Gorbalenya AE, Donchenko AP, Blinov VM, Koonin EV (1989) Cysteine proteases of positive strand RNA viruses and chymotrypsin-like serin proteases: a distinct protein superfamily with a common structural fold. FEBS Lett 243:103–114CrossRefPubMed Gorbalenya AE, Donchenko AP, Blinov VM, Koonin EV (1989) Cysteine proteases of positive strand RNA viruses and chymotrypsin-like serin proteases: a distinct protein superfamily with a common structural fold. FEBS Lett 243:103–114CrossRefPubMed
22.
Zurück zum Zitat Gorbalenya AE, Koonin EV, Blinov VM, Donchenko AP (1988) Sobemovirus genome appears to encode a serine protease related to cysteine proteases of picornaviruses. FEBS Lett 236:287–290CrossRefPubMed Gorbalenya AE, Koonin EV, Blinov VM, Donchenko AP (1988) Sobemovirus genome appears to encode a serine protease related to cysteine proteases of picornaviruses. FEBS Lett 236:287–290CrossRefPubMed
23.
Zurück zum Zitat Makinen K, Tamm T, Naess V, Truve E, Puurand I, Munthe T, Saarma M (1995) Characterization of cocksfoot mottle sobemovirus genomic RNA and sequence comparison with related viruses. J Gen Virol 76:2817–2825CrossRefPubMed Makinen K, Tamm T, Naess V, Truve E, Puurand I, Munthe T, Saarma M (1995) Characterization of cocksfoot mottle sobemovirus genomic RNA and sequence comparison with related viruses. J Gen Virol 76:2817–2825CrossRefPubMed
24.
Zurück zum Zitat Kamer G, Argos P (1984) Primary structural comparison of RNA-dependent polymerases from plant, animal and bacterial viruses. Nucleic Acids Res 12:7282–7629CrossRef Kamer G, Argos P (1984) Primary structural comparison of RNA-dependent polymerases from plant, animal and bacterial viruses. Nucleic Acids Res 12:7282–7629CrossRef
25.
Zurück zum Zitat Hermodson MA, Abad-Zapatero C, Abdel-Meguid SS, Pundak S, Rossmann MG, Tremaine JH (1982) Amino acid sequence of southern bean mosaic virus coat protein and its relation to the three-dimensional structure of the virus. Virology 119:133–149CrossRefPubMed Hermodson MA, Abad-Zapatero C, Abdel-Meguid SS, Pundak S, Rossmann MG, Tremaine JH (1982) Amino acid sequence of southern bean mosaic virus coat protein and its relation to the three-dimensional structure of the virus. Virology 119:133–149CrossRefPubMed
26.
Zurück zum Zitat Satheshkumar PS, Lokesh GL, Murthy MRN, Savithri HS (2005) The role of Arginine-rich motif and β-annulus in the assembly and stability of Sesbania mosaic virus capsids. J Mol Biol 353:447–458CrossRefPubMed Satheshkumar PS, Lokesh GL, Murthy MRN, Savithri HS (2005) The role of Arginine-rich motif and β-annulus in the assembly and stability of Sesbania mosaic virus capsids. J Mol Biol 353:447–458CrossRefPubMed
Metadaten
Titel
Complete nucleotide sequence of Velvet tobacco mottle virus isolate K1
verfasst von
K. Arthur
S. Dogra
J. W. Randles
Publikationsdatum
01.11.2010
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 11/2010
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-010-0801-2

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