Skip to main content
Erschienen in: Archives of Virology 12/2012

01.12.2012 | Original Article

Complete nucleotide sequence and construction of an infectious clone of Chinese yam necrotic mosaic virus suggest that macluraviruses have the smallest genome among members of the family Potyviridae

verfasst von: Toru Kondo, Takashi Fujita

Erschienen in: Archives of Virology | Ausgabe 12/2012

Einloggen, um Zugang zu erhalten

Abstract

The complete nucleotide sequence of Chinese yam necrotic mosaic virus (CYNMV) was determined from cloned virus cDNA. The CYNMV genomic RNA is 8224 nucleotides in length, excluding the poly(A) tail, and contains one long open reading frame encoding a large polyprotein of 2620 amino acids. CYNMV has no counterpart to the P1 cistron and a short HC-Pro cistron located at the 5′ side of the potyvirus genome. A full-length cDNA clone, pCYNMV, was assembled under the control of the cauliflower mosaic virus 35S promoter and the nopaline synthase terminator. Biolistic inoculation of Nagaimo plants with cDNA resulted in systemic necrotic mosaic symptoms typical of CYNMV infection. To our knowledge, this is the first report of the complete nucleotide sequence and construction of an infectious cDNA clone of a member of the genus Macluravirus.
Literatur
1.
Zurück zum Zitat Adams MJ, Antoniw JF, Beaudoin F (2005) Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. Mol Plant Pathol 6:471–487PubMedCrossRef Adams MJ, Antoniw JF, Beaudoin F (2005) Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. Mol Plant Pathol 6:471–487PubMedCrossRef
2.
Zurück zum Zitat Adams MJ, Antoniw JF, Fauquet CM (2005) Molecular criteria for genus and species discrimination within the family Potyviridae. Arch Virol 150:459–479PubMedCrossRef Adams MJ, Antoniw JF, Fauquet CM (2005) Molecular criteria for genus and species discrimination within the family Potyviridae. Arch Virol 150:459–479PubMedCrossRef
3.
Zurück zum Zitat Adams MJ, Zerbini FM, French R, Rabenstein F, Stenger DC, Valkonen JPT (2012) Family Potyviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy: ninth report of the international committee on taxonomy of viruses. Academic Press, London, pp 1069–1089 Adams MJ, Zerbini FM, French R, Rabenstein F, Stenger DC, Valkonen JPT (2012) Family Potyviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy: ninth report of the international committee on taxonomy of viruses. Academic Press, London, pp 1069–1089
4.
Zurück zum Zitat Badge J, Robinson DJ, Brunt AA, Foster GD (1997) 3′-Terminal sequences of the RNA genomes of narcissus latent and Maclura mosaic viruses suggest that they represent a new genus of the Potyviridae. J Gen Virol 78:253–257PubMed Badge J, Robinson DJ, Brunt AA, Foster GD (1997) 3′-Terminal sequences of the RNA genomes of narcissus latent and Maclura mosaic viruses suggest that they represent a new genus of the Potyviridae. J Gen Virol 78:253–257PubMed
5.
Zurück zum Zitat Bowen AJ, Clarke IT, Foster GD (2003) Review of the Genus Macluravirus of the Potyviridae. Bulg J Agric Sci 9:277–286 Bowen AJ, Clarke IT, Foster GD (2003) Review of the Genus Macluravirus of the Potyviridae. Bulg J Agric Sci 9:277–286
6.
Zurück zum Zitat Chung BY-W, Miller WA, Atkins JF, Firth AE (2008) An overlapping essential gene in the Potyviridae. Proc Natl Acad Sci USA 105:5897–5902PubMedCrossRef Chung BY-W, Miller WA, Atkins JF, Firth AE (2008) An overlapping essential gene in the Potyviridae. Proc Natl Acad Sci USA 105:5897–5902PubMedCrossRef
7.
Zurück zum Zitat Ciuffo M, Testa M, Lenzi R, Turina M (2011) Ranunculus latent virus: a strain of artichoke latent virus or a new macluravirus infecting artichoke? Arch Virol 156:1053–1057PubMedCrossRef Ciuffo M, Testa M, Lenzi R, Turina M (2011) Ranunculus latent virus: a strain of artichoke latent virus or a new macluravirus infecting artichoke? Arch Virol 156:1053–1057PubMedCrossRef
8.
Zurück zum Zitat Desbiez C, Girard M, Lecoq H (2010) A novel natural mutation in HC-Pro responsible for mild symptomatology of Zucchini yellow mosaic virus (ZYMV, Potyvirus) in cucurbits. Arch Virol 155:397–401PubMedCrossRef Desbiez C, Girard M, Lecoq H (2010) A novel natural mutation in HC-Pro responsible for mild symptomatology of Zucchini yellow mosaic virus (ZYMV, Potyvirus) in cucurbits. Arch Virol 155:397–401PubMedCrossRef
9.
Zurück zum Zitat French R, Stenger DC (2005) Genome sequences of Agropyron mosaic virus and Hordeum mosaic virus support reciprocal monophyly of the genera Potyvirus and Rymovirus in the family Potyviridae. Arch Virol 150:299–312PubMedCrossRef French R, Stenger DC (2005) Genome sequences of Agropyron mosaic virus and Hordeum mosaic virus support reciprocal monophyly of the genera Potyvirus and Rymovirus in the family Potyviridae. Arch Virol 150:299–312PubMedCrossRef
10.
Zurück zum Zitat Fukumoto F, Tochihara H (1978) Chinese yam necrotic mosaic virus (in Japanese with English abstract). Ann Phytopathol Soc Jpn 44:1–5CrossRef Fukumoto F, Tochihara H (1978) Chinese yam necrotic mosaic virus (in Japanese with English abstract). Ann Phytopathol Soc Jpn 44:1–5CrossRef
11.
Zurück zum Zitat Gal-On A (2000) A point mutation in the FRNK motif of the Potyvirus helper component-protease gene alters symptom expression in cucurbits and elicits protection against the severe homologous virus. Phytopathology 90:467–473PubMedCrossRef Gal-On A (2000) A point mutation in the FRNK motif of the Potyvirus helper component-protease gene alters symptom expression in cucurbits and elicits protection against the severe homologous virus. Phytopathology 90:467–473PubMedCrossRef
12.
Zurück zum Zitat Gal-On A, Meiri E, Huet H, Hua WJ, Raccah B, Gaba V (1995) Particle bombardment drastically increases the infectivity of cloned DNA of zucchini yellow mosaic potyvirus. J Gen Virol 76:3223–3227PubMedCrossRef Gal-On A, Meiri E, Huet H, Hua WJ, Raccah B, Gaba V (1995) Particle bombardment drastically increases the infectivity of cloned DNA of zucchini yellow mosaic potyvirus. J Gen Virol 76:3223–3227PubMedCrossRef
15.
Zurück zum Zitat Jebasingh T, Jose M, Yadunandam AK, Backiyarani S, Srividhya KV, Krishnaswamy S, Usha R (2011) Molecular modeling and conformational analysis of native and refolded viral genome-linked protein of Cardamom mosaic virus. Indian J Biochem Biophys 48:336–340PubMed Jebasingh T, Jose M, Yadunandam AK, Backiyarani S, Srividhya KV, Krishnaswamy S, Usha R (2011) Molecular modeling and conformational analysis of native and refolded viral genome-linked protein of Cardamom mosaic virus. Indian J Biochem Biophys 48:336–340PubMed
16.
Zurück zum Zitat Kadaré G, Haenni A-L (1997) Virus-encoded RNA helicases. J Virol 71:2583–2590PubMed Kadaré G, Haenni A-L (1997) Virus-encoded RNA helicases. J Virol 71:2583–2590PubMed
17.
Zurück zum Zitat Kamer G, Argos P (1984) Primary structural comparison of RNA-dependent polymerases from plant, animal and bacterial viruses. Nucleic Acids Res 12:7269–7282PubMedCrossRef Kamer G, Argos P (1984) Primary structural comparison of RNA-dependent polymerases from plant, animal and bacterial viruses. Nucleic Acids Res 12:7269–7282PubMedCrossRef
18.
Zurück zum Zitat Kashiwazaki S, Hayano Y, Minobe Y, Omura T, Hibino H, Tsuchizaki T (1989) Nucleotide sequence of the capsid protein gene of barley yellow mosaic virus. J Gen Virol 70:3015–3023PubMedCrossRef Kashiwazaki S, Hayano Y, Minobe Y, Omura T, Hibino H, Tsuchizaki T (1989) Nucleotide sequence of the capsid protein gene of barley yellow mosaic virus. J Gen Virol 70:3015–3023PubMedCrossRef
19.
Zurück zum Zitat Kasschau KD, Carrington JC (2001) Long-distance movement and replication maintenance functions correlate with silencing suppression activity of potyviral HC-Pro. Virology 285:71–81PubMedCrossRef Kasschau KD, Carrington JC (2001) Long-distance movement and replication maintenance functions correlate with silencing suppression activity of potyviral HC-Pro. Virology 285:71–81PubMedCrossRef
20.
Zurück zum Zitat Kondo T (2001) The 3′-terminal sequence of Chinese yam necrotic mosaic virus genomic RNA: a close relationship with macluravirus. Arch Virol 146:1527–1535PubMedCrossRef Kondo T (2001) The 3′-terminal sequence of Chinese yam necrotic mosaic virus genomic RNA: a close relationship with macluravirus. Arch Virol 146:1527–1535PubMedCrossRef
21.
Zurück zum Zitat Kondo T, Fuji S, Yamashita K, Kang D-K, Chang M-U (2005) Broad bean wilt virus 2 in yams. J Gen Plant Pathol 71:441–443CrossRef Kondo T, Fuji S, Yamashita K, Kang D-K, Chang M-U (2005) Broad bean wilt virus 2 in yams. J Gen Plant Pathol 71:441–443CrossRef
22.
Zurück zum Zitat Kondo T, Kang D-K, Fuji S, Chang M-U (2003) Sequence diversity in the coat protein and 3′-untranslated region of Chinese yam necrotic mosaic virus RNA. J Gen Plant Pathol 69:397–399CrossRef Kondo T, Kang D-K, Fuji S, Chang M-U (2003) Sequence diversity in the coat protein and 3′-untranslated region of Chinese yam necrotic mosaic virus RNA. J Gen Plant Pathol 69:397–399CrossRef
23.
Zurück zum Zitat Kondo T, Kasai K, Yamashita K, Ishitani M (2007) Selection and discrimination of an attenuated strain of Chinese yam necrotic mosaic virus for cross-protection. J Gen Plant Pathol 73:152–155CrossRef Kondo T, Kasai K, Yamashita K, Ishitani M (2007) Selection and discrimination of an attenuated strain of Chinese yam necrotic mosaic virus for cross-protection. J Gen Plant Pathol 73:152–155CrossRef
24.
Zurück zum Zitat Li W, Hilf ME, Webb SE, Baker CA, Adkins S (2008) Presence of P1b and absence of HC-Pro in squash vein yellowing virus suggests a general feature of the genus Ipomovirus in the family Potyviridae. Virus Res 135:213–219PubMedCrossRef Li W, Hilf ME, Webb SE, Baker CA, Adkins S (2008) Presence of P1b and absence of HC-Pro in squash vein yellowing virus suggests a general feature of the genus Ipomovirus in the family Potyviridae. Virus Res 135:213–219PubMedCrossRef
25.
Zurück zum Zitat Liou RF, Yan HZ, Hong JL (2003) Molecular evidence that aphid-transmitted Alpinia mosaic virus is a tentative member of the genus Macluravirus. Arch Virol 148:1211–1218PubMedCrossRef Liou RF, Yan HZ, Hong JL (2003) Molecular evidence that aphid-transmitted Alpinia mosaic virus is a tentative member of the genus Macluravirus. Arch Virol 148:1211–1218PubMedCrossRef
26.
Zurück zum Zitat López-Moya JJ, Wang RY, Pirone TP (1999) Context of the coat protein DAG motif affects potyvirus transmissibility by aphids. J Gen Virol 80:3281–3288PubMed López-Moya JJ, Wang RY, Pirone TP (1999) Context of the coat protein DAG motif affects potyvirus transmissibility by aphids. J Gen Virol 80:3281–3288PubMed
27.
Zurück zum Zitat Lütcke HA, Chow KC, Mickel FS, Moss KA, Kern HF, Scheele GA (1987) Selection of AUG initiation codons differs in plants and animals. EMBO J 6:43–48PubMed Lütcke HA, Chow KC, Mickel FS, Moss KA, Kern HF, Scheele GA (1987) Selection of AUG initiation codons differs in plants and animals. EMBO J 6:43–48PubMed
28.
Zurück zum Zitat Mandal B, Vijayanandraj S, Shilpi S, Pun KB, Singh V, Pant RP, Jain RK, Varadarasan S, Varma A (2012) Disease distribution and characterization of a new macluravirus associated with chirke disease of large cardamom. Ann Appl Biol. doi:10.1111/j.1744-7348.2012.00537.x Mandal B, Vijayanandraj S, Shilpi S, Pun KB, Singh V, Pant RP, Jain RK, Varadarasan S, Varma A (2012) Disease distribution and characterization of a new macluravirus associated with chirke disease of large cardamom. Ann Appl Biol. doi:10.​1111/​j.​1744-7348.​2012.​00537.​x
29.
Zurück zum Zitat Nishiguchi M, Kobayashi K (2011) Attenuated plant viruses: preventing virus diseases and understanding the molecular mechanism. J Gen Plant Pathol 77:221–229CrossRef Nishiguchi M, Kobayashi K (2011) Attenuated plant viruses: preventing virus diseases and understanding the molecular mechanism. J Gen Plant Pathol 77:221–229CrossRef
30.
Zurück zum Zitat Plisson C, Drucker M, Blanc S, German-Retana S, Gall OL, Thomas D, Bron P (2003) Structural characterization of HC-Pro, a plant virus multifunctional protein. J Biol Chem 278:23753–23761PubMedCrossRef Plisson C, Drucker M, Blanc S, German-Retana S, Gall OL, Thomas D, Bron P (2003) Structural characterization of HC-Pro, a plant virus multifunctional protein. J Biol Chem 278:23753–23761PubMedCrossRef
31.
Zurück zum Zitat Rohožková J, Navrátil M (2011) P1 peptidase: a mysterious protein of family Potyviridae. J Biosci 36:189–200PubMedCrossRef Rohožková J, Navrátil M (2011) P1 peptidase: a mysterious protein of family Potyviridae. J Biosci 36:189–200PubMedCrossRef
32.
Zurück zum Zitat Ryan MD, Flint M (1997) Virus-encoded proteinases of the picornavirus super-group. J Gen Virol 78:699–723PubMed Ryan MD, Flint M (1997) Virus-encoded proteinases of the picornavirus super-group. J Gen Virol 78:699–723PubMed
33.
Zurück zum Zitat Sano T, Higaki T, Oda Y, Hayashi T, Hasezawa S (2005) Appearance of actin microfilament ‘twin peaks’ in mitosis and their function in cell plate formation, as visualized in tobacco BY-2 cells expressing GFP-fimbrin. Plant J 44:595–605PubMedCrossRef Sano T, Higaki T, Oda Y, Hayashi T, Hasezawa S (2005) Appearance of actin microfilament ‘twin peaks’ in mitosis and their function in cell plate formation, as visualized in tobacco BY-2 cells expressing GFP-fimbrin. Plant J 44:595–605PubMedCrossRef
34.
Zurück zum Zitat Shiboleth YM, Haronsky E, Leibman D, Arazi T, Wassenegger M, Whitham SA, Gaba V, Gal-On A (2007) The conserved FRNK box in HC-Pro, a plant viral suppressor of gene silencing, is required for small RNA binding and mediates symptom development. J Virol 81:13135–13148PubMedCrossRef Shiboleth YM, Haronsky E, Leibman D, Arazi T, Wassenegger M, Whitham SA, Gaba V, Gal-On A (2007) The conserved FRNK box in HC-Pro, a plant viral suppressor of gene silencing, is required for small RNA binding and mediates symptom development. J Virol 81:13135–13148PubMedCrossRef
35.
Zurück zum Zitat Shirako Y, Ehara Y (1986) Rapid diagnosis of Chinese yam necrotic mosaic virus infection by electro-blot immunoassay. Ann Phytopathol Soc Japan 52:453–459CrossRef Shirako Y, Ehara Y (1986) Rapid diagnosis of Chinese yam necrotic mosaic virus infection by electro-blot immunoassay. Ann Phytopathol Soc Japan 52:453–459CrossRef
36.
Zurück zum Zitat Shukla DD, Ward CW, Brunt AA (1994) The Potyviridae. CAB International, Wallingford Shukla DD, Ward CW, Brunt AA (1994) The Potyviridae. CAB International, Wallingford
37.
Zurück zum Zitat Stenger DC, French R (2004) Complete nucleotide sequence of Oat necrotic mottle virus: a distinct Tritimovirus species (family Potyviridae) most closely related to Wheat streak mosaic virus. Arch Virol 149:633–640PubMedCrossRef Stenger DC, French R (2004) Complete nucleotide sequence of Oat necrotic mottle virus: a distinct Tritimovirus species (family Potyviridae) most closely related to Wheat streak mosaic virus. Arch Virol 149:633–640PubMedCrossRef
38.
Zurück zum Zitat Suehiro N, Natsuaki T, Watanabe T, Okuda S (2004) An important determinant of the ability of Turnip mosaic virus to infect Brassica spp. and/or Raphanus sativus is in its P3 protein. J Gen Virol 85:2087–2098PubMedCrossRef Suehiro N, Natsuaki T, Watanabe T, Okuda S (2004) An important determinant of the ability of Turnip mosaic virus to infect Brassica spp. and/or Raphanus sativus is in its P3 protein. J Gen Virol 85:2087–2098PubMedCrossRef
39.
Zurück zum Zitat Susaimuthu J, Tzanetakis IE, Gergerich RC, Martin RR (2008) A member of a new genus in the Potyviridae infects Rubus. Virus Res 131:145–151PubMedCrossRef Susaimuthu J, Tzanetakis IE, Gergerich RC, Martin RR (2008) A member of a new genus in the Potyviridae infects Rubus. Virus Res 131:145–151PubMedCrossRef
40.
Zurück zum Zitat Tatineni S, Ziems AD, Wegulo SN, French R (2009) Triticum mosaic virus: a distinct member of the family Potyviridae with an unusually long leader sequence. Phytopathology 99:943–950PubMedCrossRef Tatineni S, Ziems AD, Wegulo SN, French R (2009) Triticum mosaic virus: a distinct member of the family Potyviridae with an unusually long leader sequence. Phytopathology 99:943–950PubMedCrossRef
41.
Zurück zum Zitat Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680PubMedCrossRef Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680PubMedCrossRef
42.
Zurück zum Zitat Tochihara H (1993) Yams (in Japanese). In: Tsuchizaki T, Tochihara H, Kameya M, Yanase H (eds) Plant virus diseases in Japan. Zenkoku Noson Kyoiku Kyokai, Tokyo, pp 431–435 Tochihara H (1993) Yams (in Japanese). In: Tsuchizaki T, Tochihara H, Kameya M, Yanase H (eds) Plant virus diseases in Japan. Zenkoku Noson Kyoiku Kyokai, Tokyo, pp 431–435
43.
Zurück zum Zitat Urcuqui-Inchima S, Haenni A-L, Bernardi F (2001) Potyvirus proteins: a wealth of functions. Virus Res 74:157–175PubMedCrossRef Urcuqui-Inchima S, Haenni A-L, Bernardi F (2001) Potyvirus proteins: a wealth of functions. Virus Res 74:157–175PubMedCrossRef
44.
Zurück zum Zitat Wang J-G, Zou X-J, Zheng H-Y, Adams MJ, Chen H-R, Chen JP (2009) Molecular characterization of a new macluravirus from yam in Yunnan, China. Arch Virol 154:1379–1380PubMedCrossRef Wang J-G, Zou X-J, Zheng H-Y, Adams MJ, Chen H-R, Chen JP (2009) Molecular characterization of a new macluravirus from yam in Yunnan, China. Arch Virol 154:1379–1380PubMedCrossRef
46.
Zurück zum Zitat You Y, Shirako Y (2010) Bymovirus reverse genetics: requirements for RNA2-encoded proteins in systemic infection. Mol Plant Pathol 11:383–394PubMedCrossRef You Y, Shirako Y (2010) Bymovirus reverse genetics: requirements for RNA2-encoded proteins in systemic infection. Mol Plant Pathol 11:383–394PubMedCrossRef
47.
Zurück zum Zitat Zheng T, Chen J, Chen JP, Adams MJ (2002) The complete sequence of Oat mosaic virus and evidence for deletion and duplication in RNA2. Arch Virol 147:635–642PubMedCrossRef Zheng T, Chen J, Chen JP, Adams MJ (2002) The complete sequence of Oat mosaic virus and evidence for deletion and duplication in RNA2. Arch Virol 147:635–642PubMedCrossRef
Metadaten
Titel
Complete nucleotide sequence and construction of an infectious clone of Chinese yam necrotic mosaic virus suggest that macluraviruses have the smallest genome among members of the family Potyviridae
verfasst von
Toru Kondo
Takashi Fujita
Publikationsdatum
01.12.2012
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 12/2012
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-012-1429-1

Weitere Artikel der Ausgabe 12/2012

Archives of Virology 12/2012 Zur Ausgabe

Leitlinien kompakt für die Innere Medizin

Mit medbee Pocketcards sicher entscheiden.

Seit 2022 gehört die medbee GmbH zum Springer Medizin Verlag

Update Innere Medizin

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.