Skip to main content
Erschienen in: Archives of Virology 7/2016

11.04.2016 | Annotated Sequence Record

Complete genome analysis of jasmine virus T from Jasminum sambac in China

verfasst von: Yajun Tang, Fangluan Gao, Zhen Yang, Zujian Wu, Liang Yang

Erschienen in: Archives of Virology | Ausgabe 7/2016

Einloggen, um Zugang zu erhalten

Abstract

The genome of a potyvirus (isolate JaVT_FZ) recovered from jasmine (Jasminum sambac L.) showing yellow ringspot symptoms in Fuzhou, China, was sequenced. JaVT_FZ is closely related to seven other potyviruses with completely sequenced genomes, with which it shares 66-70 % nucleotide and 52-56 % amino acid sequence identity. However, the coat protein (CP) gene shares 82-92 % nucleotide and 90-97 % amino acid sequence identity with those of two partially sequenced potyviruses, named jasmine potyvirus T (JaVT-jasmine) and jasmine yellow mosaic potyvirus (JaYMV-India), respectively. This suggests that JaVT_FZ, JaVT-jasmine and JaYMV-India should be regarded as members of a single potyvirus species, for which the name “Jasmine virus T” has priority.
Anhänge
Nur mit Berechtigung zugänglich
Literatur
1.
Zurück zum Zitat Wikee S, Cai L, Pairin N, McKenzie EC, Su Y-Y, Chukeatirote E, Thi H, Bahkali A, Moslem M, Abdelsalam K, Hyde K (2011) Colletotrichum species from Jasmine (Jasminum sambac). Fungal Divers 46(1):171–182CrossRef Wikee S, Cai L, Pairin N, McKenzie EC, Su Y-Y, Chukeatirote E, Thi H, Bahkali A, Moslem M, Abdelsalam K, Hyde K (2011) Colletotrichum species from Jasmine (Jasminum sambac). Fungal Divers 46(1):171–182CrossRef
2.
Zurück zum Zitat Lin Y, Chen T, Chang C (2004) Characterization of a new potyvirus isolated from jasmine [Jasminum sambac (L). Ait] in Taiwan. Plant Pathol Bull 13:69–84 Lin Y, Chen T, Chang C (2004) Characterization of a new potyvirus isolated from jasmine [Jasminum sambac (L). Ait] in Taiwan. Plant Pathol Bull 13:69–84
3.
Zurück zum Zitat Kaur CKS, Snehi SK, Raj SK (2013) Molecular detection of jasmine potyvirus associated with yellow mosaic symptoms on Jasminum sambac L. in India. Chin J Integr Med 46(9):1102–1107 Kaur CKS, Snehi SK, Raj SK (2013) Molecular detection of jasmine potyvirus associated with yellow mosaic symptoms on Jasminum sambac L. in India. Chin J Integr Med 46(9):1102–1107
4.
Zurück zum Zitat Sudheera Y, Vishnu Vardhan GP, Hema M, Krishna Reddy M, Sreenivasulu P (2014) Characterization of a potyvirus associated with yellow mosaic disease of jasmine (Jasminum sambac L.) in Andhra Pradesh, India. Virus Dis 25(3):394–397CrossRef Sudheera Y, Vishnu Vardhan GP, Hema M, Krishna Reddy M, Sreenivasulu P (2014) Characterization of a potyvirus associated with yellow mosaic disease of jasmine (Jasminum sambac L.) in Andhra Pradesh, India. Virus Dis 25(3):394–397CrossRef
5.
Zurück zum Zitat Fillmer K, Adkins S, Pongam P, D’Elia T (2015) Complete genome sequence of tomato mosaic virus isolated from jasmine in the United States. Genome Announc 3(4):e00706–e00715CrossRefPubMedPubMedCentral Fillmer K, Adkins S, Pongam P, D’Elia T (2015) Complete genome sequence of tomato mosaic virus isolated from jasmine in the United States. Genome Announc 3(4):e00706–e00715CrossRefPubMedPubMedCentral
6.
Zurück zum Zitat Goelet P, Lomonossoff GP, Butler PJ, Akam ME, Gait MJ, Karn J (1982) Nucleotide sequence of tobacco mosaic virus RNA. Proc Natl Acad Sci USA 79(19):5818–5822CrossRefPubMedPubMedCentral Goelet P, Lomonossoff GP, Butler PJ, Akam ME, Gait MJ, Karn J (1982) Nucleotide sequence of tobacco mosaic virus RNA. Proc Natl Acad Sci USA 79(19):5818–5822CrossRefPubMedPubMedCentral
7.
Zurück zum Zitat Zhao F, Hwang U, Lim S, Yoo R, Igori D, Lee S-H, Lim H-S, Moon J (2015) Complete genome sequence and construction of infectious full-length cDNA clones of tobacco ringspot Nepovirus, a viral pathogen causing bud blight in soybean. Virus Genes 51(1):163–166CrossRefPubMed Zhao F, Hwang U, Lim S, Yoo R, Igori D, Lee S-H, Lim H-S, Moon J (2015) Complete genome sequence and construction of infectious full-length cDNA clones of tobacco ringspot Nepovirus, a viral pathogen causing bud blight in soybean. Virus Genes 51(1):163–166CrossRefPubMed
8.
Zurück zum Zitat Wilson KI (1972) Chlorotic ring spot of jasmine. Indian Phytopathol 25:157–158 Wilson KI (1972) Chlorotic ring spot of jasmine. Indian Phytopathol 25:157–158
9.
Zurück zum Zitat Ha C, Coombs S, Revill PA, Harding RM, Vu M, Dale JL (2008) Design and application of two novel degenerate primer pairs for the detection and complete genomic characterization of potyviruses. Arch Virol 153(1):25–36CrossRefPubMed Ha C, Coombs S, Revill PA, Harding RM, Vu M, Dale JL (2008) Design and application of two novel degenerate primer pairs for the detection and complete genomic characterization of potyviruses. Arch Virol 153(1):25–36CrossRefPubMed
10.
Zurück zum Zitat Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Hohna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61(3):539–542CrossRefPubMedPubMedCentral Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Hohna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61(3):539–542CrossRefPubMedPubMedCentral
11.
Zurück zum Zitat Nylander JAA (2008) MrModeltest v2.3. Program distributed by the author. Evolutionary Biology Centre, Uppsala University Nylander JAA (2008) MrModeltest v2.3. Program distributed by the author. Evolutionary Biology Centre, Uppsala University
12.
Zurück zum Zitat Adams MJ, Antoniw JF, Beaudoin F (2005) Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. Mol Plant Pathol 6(4):471–487CrossRefPubMed Adams MJ, Antoniw JF, Beaudoin F (2005) Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. Mol Plant Pathol 6(4):471–487CrossRefPubMed
13.
14.
Zurück zum Zitat King AM, Lefkowitz E, Adams MJ, Carstens EB (2011) Virus taxonomy, ninth report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, Amsterdam King AM, Lefkowitz E, Adams MJ, Carstens EB (2011) Virus taxonomy, ninth report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, Amsterdam
Metadaten
Titel
Complete genome analysis of jasmine virus T from Jasminum sambac in China
verfasst von
Yajun Tang
Fangluan Gao
Zhen Yang
Zujian Wu
Liang Yang
Publikationsdatum
11.04.2016
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 7/2016
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-016-2811-1

Weitere Artikel der Ausgabe 7/2016

Archives of Virology 7/2016 Zur Ausgabe

Leitlinien kompakt für die Innere Medizin

Mit medbee Pocketcards sicher entscheiden.

Seit 2022 gehört die medbee GmbH zum Springer Medizin Verlag

Update Innere Medizin

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.