nach oben

Erschienen in:

05.02.2018 | Brief Report

The identification and characterization of novel rat hepatitis E virus strains in Bali and Sumbawa, Indonesia

verfasst von: Putu Prathiwi Primadharsini, Mulyanto, I. Dewa Nyoman Wibawa, Joko Anggoro, Tsutomu Nishizawa, Masaharu Takahashi, Suljid Jirintai, Hiroaki Okamoto

Erschienen in: Archives of Virology | Ausgabe 5/2018

Einloggen, um Zugang zu erhalten

Abstract

All three genetic groups of ratHEV have been found in Indonesia, suggesting the presence of additional variants of ratHEV in unexamined areas of Indonesia. A total of 242 wild rats were captured in Bali and Sumbawa, Indonesia, during 2014-2016. Among them, 4.1% were seropositive for anti-ratHEV IgG and two (0.8%) had detectable ratHEV RNA: ratESUMBAWA-140L and ratEBali2016D-047L, sharing 84.9-85.4% and 86.9-92.1% nucleotide identity with the reported G2 strains, respectively. The provisional criteria supported the notion that the ratEBali2016D-047L and ratESUMBAWA-140L strains were novel G2 variants. These results suggested the spatial distribution of further divergent ratHEV strains in Indonesia.

Nur mit Berechtigung zugänglich

Hsu IW, Tsai HJ (2014) Avian hepatitis E virus in chickens, Taiwan, 2013. Emerg Infect Dis 20:149–151CrossRefPubMedPubMedCentral

Inoue J, Takahashi M, Yazaki Y, Tsuda F, Okamoto H (2006) Development and validation of an improved RT-PCR assay with nested universal primers for detection of hepatitis E virus strains with significant sequence divergence. J Virol Methods 137:325–333CrossRefPubMed

Johne R, Heckel G, Plenge-Bönig A, Kindler E, Maresch C, Reetz J, Schielke A, Ulrich RG (2010) Novel hepatitis E virus genotype in Norway rats, Germany. Emerg Infect Dis 16:1452–1455CrossRefPubMedPubMedCentral

Johne R, Dremsek P, Kindler E, Schielke A, Plenge-Bonig A, Gregersen H, Wessels U, Schmidt K, Rietschel W, Groschup MH, Guenther S, Heckel G, Ulrich RG (2012) Rat hepatitis E virus: geographical clustering within Germany and serological detection in wild Norway rats (Rattus norvegicus). Infect Genet Evol 12:947–956CrossRefPubMed

Kamar N, Dalton HR, Abravanel F, Izopet J (2014) Hepatitis E virus infection. Clin Microbiol Rev 27:116–138CrossRefPubMedPubMedCentral

Kanai Y, Miyasaka S, Uyama S, Kawami S, Kato-Mori Y, Tsujikawa M, Yunoki M, Nishiyama S, Ikuta K, Hagiwara K (2012) Hepatitis E virus in Norway rats (Rattus norvegicus) captured around a pig farm. BMC Res Notes 5:4CrossRefPubMedPubMedCentral

Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120CrossRefPubMed

Kumar S, Stecher G, Tamura K (2016) MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33:1870–1874CrossRefPubMed

Lack JB, Volk K, Van Den Bussche RA (2012) Hepatitis E virus genotype 3 in wild rats, United States. Emerg Infect Dis 18:1268–1273CrossRefPubMedPubMedCentral

10.

Li TC, Yoshimatsu K, Yasuda SP, Arikawa J, Koma T, Kataoka M, Ami Y, Suzaki Y, le Mai TQ, Hoa NT, Yamashiro T, Hasebe F, Takeda N, Wakita T (2011) Characterization of self-assembled virus-like particles of rat hepatitis E virus generated by recombinant baculoviruses. J Gen Virol 92:2830–2837CrossRefPubMedPubMedCentral

11.

Li TC, Ami Y, Suzaki Y, Yasuda SP, Yoshimatsu K, Arikawa J, Takeda N, Takaji W (2013) Characterization of full genome of rat hepatitis E virus strain from Vietnam. Emerg Infect Dis 19:115–118CrossRefPubMedPubMedCentral

12.

Li TC, Yoshizaki S, Ami Y, Suzaki Y, Yasuda SP, Yoshimatsu K, Arikawa J, Takeda N, Wakita T (2013) Susceptibility of laboratory rats against genotypes 1, 3, 4, and rat hepatitis E viruses. Vet Microbiol 163:54–61CrossRefPubMed

13.

Li W, Guan D, Su J, Takeda N, Wakita T, Li TC, Ke CW (2013) High prevalence of rat hepatitis E virus in wild rats in China. Vet Microbiol 165:275–280CrossRefPubMed

14.

Mulyanto, Depamede SN, Sriasih M, Takahashi M, Nagashima S, Jirintai S, Nishizawa T, Okamoto H (2013) Frequent detection and characterization of hepatitis E virus variants in wild rats (Rattus rattus) in Indonesia. Arch Virol 158:87–96CrossRefPubMed

15.

Mulyanto, Suparyatmo JB, Andayani IG, Khalid Takahashi M, Ohnishi H, Jirintai S, Nagashima S, Nishizawa T, Okamoto H (2014) Marked genomic heterogeneity of rat hepatitis E virus strains in Indonesia demonstrated on a full-length genome analysis. Virus Res 179:102–112CrossRefPubMed

16.

Obana S, Shimizu K, Yoshimatsu K, Hasebe F, Hotta K, Isozumi R, Nguyen HT, Le MQ, Yamashiro T, Tsuda Y, Arikawa J (2017) Epizootiological study of rodent-borne hepatitis E virus HEV-C1 in small mammals in Hanoi, Vietnam. J Vet Med Sci 79:76–81CrossRefPubMed

17.

Okamoto H (2007) Genetic variability and evolution of hepatitis E virus. Virus Res 127:216–228CrossRefPubMed

18.

Park SJ, Lee BW, Moon HW, Sung HW, Yoon BI, Meng XJ, Kwon HM (2015) Construction of an infectious cDNA clone of genotype 1 avian hepatitis E virus: characterization of its pathogenicity in broiler breeders and demonstration of its utility in studying the role of the hypervariable region in virus replication. J Gen Virol 96:1015–1026CrossRefPubMed

19.

Purcell RH, Engle RE, Rood MP, Kabrane-Lazizi Y, Nguyen HT, Govindarajan S, St Claire M, Emerson SU (2011) Hepatitis E virus in rats, Los Angeles, California, USA. Emerg Infect Dis 17:2216–2222CrossRefPubMedPubMedCentral

20.

Purdy MA, Harrison TJ, Jameel S, Meng XJ, Okamoto H, Van der Poel WHM, Smith DB, ICTV Report C (2017) ICTV virus taxonomy profile: Hepeviridae. J Gen Virol 98:2645–2646CrossRefPubMedPubMedCentral

21.

Raj VS, Smits SL, Pas SD, Provacia LB, Moorman-Roest H, Osterhaus AD, Haagmans BL (2012) Novel hepatitis E virus in ferrets, The Netherlands. Emerg Infect Dis 18:1369–1370CrossRefPubMedPubMedCentral

22.

Ryll R, Bernstein S, Heuser E, Schlegel M, Dremsek P, Zumpe M, Wolf S, Pepin M, Bajomi D, Muller G, Heiberg AC, Spahr C, Lang J, Groschup MH, Ansorge H, Freise J, Guenther S, Baert K, Ruiz-Fons F, Pikula J, Knap N, Tsakmakidis I, Dovas C, Zanet S, Imholt C, Heckel G, Johne R, Ulrich RG (2017) Detection of rat hepatitis E virus in wild Norway rats (Rattus norvegicus) and Black rats (Rattus rattus) from 11 European countries. Vet Microbiol 208:58–68CrossRefPubMed

23.

Smith DB, Simmonds P, Jameel S, Emerson SU, Harrison TJ, Meng XJ, Okamoto H, Van der Poel WH, Purdy MA (2014) Consensus proposals for classification of the family Hepeviridae. J Gen Virol 95:2223–2232CrossRefPubMedPubMedCentral

24.

Smith DB, Simmonds P, Izopet J, Oliveira-Filho EF, Ulrich RG, Johne R, Koenig M, Jameel S, Harrison TJ, Meng XJ, Okamoto H, Van der Poel WH, Purdy MA (2016) Proposed reference sequences for hepatitis E virus subtypes. J Gen Virol 97:537–542CrossRefPubMedPubMedCentral

25.

Sugono D (2008) The mapping of languages in Indonesia. Language Center Press, Jakarta, p 8

26.

Tam AW, Smith MM, Guerra ME, Huang CC, Bradley DW, Fry KE, Reyes GR (1991) Hepatitis E virus (HEV): molecular cloning and sequencing of the full-length viral genome. Virology 185:120–131CrossRefPubMed

Titel: The identification and characterization of novel rat hepatitis E virus strains in Bali and Sumbawa, Indonesia
verfasst von: Putu Prathiwi Primadharsini
Mulyanto
I. Dewa Nyoman Wibawa
Joko Anggoro
Tsutomu Nishizawa
Masaharu Takahashi
Suljid Jirintai
Hiroaki Okamoto
Publikationsdatum: 05.02.2018
Verlag: Springer Vienna
Erschienen in: Archives of Virology / Ausgabe 5/2018
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-018-3736-7

Leitlinien kompakt für die Innere Medizin

Mit medbee Pocketcards sicher entscheiden.

^{Seit 2022 gehört die medbee GmbH zum Springer Medizin Verlag}

Kostenlos registrieren

Neu im Fachgebiet Innere Medizin

19.04.2024 | Vorhofflimmern | Nachrichten

Update Innere Medizin

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.

Newsletter bestellen

Live-Webinar: Aktuelle Leitlinien bei Herz-Kreislauf-Erkrankungen

Springer Medizin

The identification and characterization of novel rat hepatitis E virus strains in Bali and Sumbawa, Indonesia

Abstract

Leitlinien kompakt für die Innere Medizin

Neu im Fachgebiet Innere Medizin

Parodontalbehandlung verbessert Prognose bei Katheterablation

Prostatakarzinom: EU initiiert neues Screeningkonzept

Blasenkarzinom – Biomarker statt Zytologie?

Antihypertensiva schützen auch alte Menschen noch vor Demenz

Update Innere Medizin

Live-Webinar: Aktuelle Leitlinien bei Herz-Kreislauf-Erkrankungen

Springer Medizin

Abstract

Bitte loggen Sie sich ein, um Zugang zu diesem Inhalt zu erhalten

Weitere Artikel der Ausgabe 5/2018

Genetic characterization and diversity of circulating influenza A/H1N1pdm09 viruses isolated in Jeddah, Saudi Arabia between 2014 and 2015

Molecular characterization and complete genome of a novel nepovirus from red clover

Molecular characterization of a divergent strain of calla lily chlorotic spot virus infecting celtuce (Lactuca sativa var. augustana) in China

Genetic diversity of Orf virus isolated from sheep in Uruguay

Full genome sequence of the first bluetongue virus serotype 21 (BTV-21) isolated from China: evidence for genetic reassortment between BTV-21 and bluetongue virus serotype 16 (BTV-16)

Molecular analysis of barley stripe mosaic virus isolates differing in their biological properties and the development of reverse transcription loop-mediated isothermal amplification assays for their detection

Leitlinien kompakt für die Innere Medizin

Neu im Fachgebiet Innere Medizin

Parodontalbehandlung verbessert Prognose bei Katheterablation

Prostatakarzinom: EU initiiert neues Screeningkonzept

Blasenkarzinom – Biomarker statt Zytologie?

Antihypertensiva schützen auch alte Menschen noch vor Demenz

Update Innere Medizin