Skip to main content
Log in

Solid phase subtractive cloning in differentially expressed genes identification

  • Published:
Molecular Biology Reports Aims and scope Submit manuscript

Abstract

We developed an array-based subtractive hybridization system for one-step high-throughput subtraction. We printed subtractor RNA up to 10.000 times obtaining an excellent contact surface using a little amount of RNA. During hybridization cDNA, common to subtractor and target samples, remains attached to slide immobilized RNA, leaving free in solution target specific cDNA which after retrieval is cloned.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1

Similar content being viewed by others

References

  1. Sagerstrom CG, Sun BI, Sive HL (1997) Subtractive cloning: past, present, and future. Annu Rev Biochem 66(1):751–783. doi:10.1146/annurev.biochem.66.1.751

    Article  CAS  PubMed  Google Scholar 

  2. Davis MM, Cohen DI, Nielsen EA, Steinmetz M, Paul WE, Hood L (1984) Cell-type-specific cDNA probes and the murine I region: the localization and orientation of A. Proc Natl Acad Sci USA 81(7):2194–2198. doi:10.1073/pnas.81.7.2194

    Article  CAS  PubMed  Google Scholar 

  3. Patel M, Sive HL (1996) H PCR-based subtractive cDNA cloning. In: Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG et al (eds) Current protocols in molecular biology. Wiley, New York

    Google Scholar 

  4. El-Deiry WS, Tokino T, Velculescu VE, Levy DB, Parsons R, Trent JM, Lin D, Mercer WE, Kinzler KW, Vogelstein B (1993) WAF1, a potential mediator of p53 tumor suppression. Cell 75(4):817–825. doi:10.1016/0092-8674(93)90500-P

    Article  CAS  PubMed  Google Scholar 

  5. Rivolta MN, Wilcox ER (1995) A novel and simple methodology to generate subtracted cDNA libraries. Nucleic Acids Res 23(13):2565–2566. doi:10.1093/nar/23.13.2565

    Article  CAS  PubMed  Google Scholar 

  6. Scott MR, Westphal KH, Rigby PW (1983) Activation of mouse genes in transformed cells. Cell 34(2):557–567. doi:10.1016/0092-8674(83)90388-4

    Article  CAS  PubMed  Google Scholar 

  7. Vitek MP, Kreissman SG, Gross RH (1981) The isolation of ecdysterone inducible genes by hybridization subtraction chromatography. Nucleic Acids Res 9(5):1191–1202. doi:10.1093/nar/9.5.1191

    Article  CAS  PubMed  Google Scholar 

  8. Hara E, Kato T, Nakada S, Sekiya S, Oda K (1991) Subtractive cDNA cloning using oligo(dt)30-latex and PCR: isolation of cDNA clones specific to undifferentiated human embryonal carcinoma cells. Nucleic Acids Res 19(25):7097–7104. doi:10.1093/nar/19.25.7097

    Article  CAS  PubMed  Google Scholar 

  9. Rodriguez IR, Chader GJ (1992) A novel method for the isolation of tissue-specific genes. Nucleic Acids Res 20(13):3528. doi:10.1093/nar/20.13.3528

    Article  CAS  PubMed  Google Scholar 

  10. Maréchal D, Forceille C, Breyer D, Delapierre D, Dresse A (1993) A subtractive hybridization method to isolate tissue-specific transcripts: application to the selection of new brain-specific products. Anal Biochem 208(2):330–333. doi:10.1006/abio.1993.1055

    Article  PubMed  Google Scholar 

  11. Wetmur JG (1976) Hybridization and renaturation kinetics of nucleic acids. Annu Rev Biophys Bioeng 5:337–361. doi:10.1146/annurev.bb.05.060176.002005

    Article  CAS  PubMed  Google Scholar 

  12. Lisitsyn N, Lisitsyn L, Wigler M (1993) Cloning the differences between two complex genomes. Science 259(5097):946–951. doi:10.1126/science.8438152

    Article  CAS  PubMed  Google Scholar 

  13. Hubank M, Schatz DG (1994) Identifying differences in mRNA expression by representational difference analysis of cDNA. Nucleic Acids Res 22(25):5640–5648. doi:10.1093/nar/22.25.5640

    Article  CAS  PubMed  Google Scholar 

  14. Bertioli DJ, Schichter UHA, Adams MJ, Burrows PR, Steinbiss HH, Antoniw JF (1995) An analysis of differential display shows a strong bias towards high copy number mRNAs. Nucleic Acids Res 23(21):4520–4523. doi:10.1093/nar/23.21.4520

    Article  CAS  PubMed  Google Scholar 

  15. Gestal C, Costa M, Figueras A, Novoa B (2007) Analysis of differentially expressed genes in response to bacterial stimulation in hemocytes of the carpet-shell clam Ruditapes decussates: identification of new antimicrobial peptides. Gene 406(1–2):134–143

    CAS  PubMed  Google Scholar 

  16. Venkatachalam P, Jain A, Sahi S, Raghothama K (2009) Molecular cloning and characterization of phosphate (Pi) responsive genes in Gulf ryegrass (Lolium multiflorum L.): a Pi hyperaccumulator. Plant Mol Biol 69(1–2):1–21. doi:10.1007/s11103-008-9401-x

    Article  CAS  PubMed  Google Scholar 

  17. Sperger JM, Chen X, Draper JS, Antosiewicz JE, Chon CH, Jones SB, Brooks JD, Andrews PW, Brown PO, Thomson JA (2003) Gene expression patterns in human embryonic stem cells and human pluripotent germ cell tumors. Proc Natl Acad Sci USA 100(23):13350–13355. doi:10.1073/pnas.2235735100

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Oscar F. D’Urso.

Additional information

Oscar F. D’Urso, Pietro I. D’Urso contribute equally to this work.

Rights and permissions

Reprints and permissions

About this article

Cite this article

D’Urso, O.F., D’Urso, P.I., Storelli, C. et al. Solid phase subtractive cloning in differentially expressed genes identification. Mol Biol Rep 37, 1435–1438 (2010). https://doi.org/10.1007/s11033-009-9530-6

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11033-009-9530-6

Keywords

Navigation