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Erschienen in: Journal of General Internal Medicine 8/2018

16.04.2018 | Original Research

Empirical Comparison of Publication Bias Tests in Meta-Analysis

verfasst von: Lifeng Lin, PhD, Haitao Chu, MD, PhD, Mohammad Hassan Murad, MD, Chuan Hong, PhD, Zhiyong Qu, PhD, Stephen R. Cole, PhD, Yong Chen, PhD

Erschienen in: Journal of General Internal Medicine | Ausgabe 8/2018

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ABSTRACT

Background

Decision makers rely on meta-analytic estimates to trade off benefits and harms. Publication bias impairs the validity and generalizability of such estimates. The performance of various statistical tests for publication bias has been largely compared using simulation studies and has not been systematically evaluated in empirical data.

Methods

This study compares seven commonly used publication bias tests (i.e., Begg’s rank test, trim-and-fill, Egger’s, Tang’s, Macaskill’s, Deeks’, and Peters’ regression tests) based on 28,655 meta-analyses available in the Cochrane Library.

Results

Egger’s regression test detected publication bias more frequently than other tests (15.7% in meta-analyses of binary outcomes and 13.5% in meta-analyses of non-binary outcomes). The proportion of statistically significant publication bias tests was greater for larger meta-analyses, especially for Begg’s rank test and the trim-and-fill method. The agreement among Tang’s, Macaskill’s, Deeks’, and Peters’ regression tests for binary outcomes was moderately strong (most κ’s were around 0.6). Tang’s and Deeks’ tests had fairly similar performance (κ > 0.9). The agreement among Begg’s rank test, the trim-and-fill method, and Egger’s regression test was weak or moderate (κ < 0.5).

Conclusions

Given the relatively low agreement between many publication bias tests, meta-analysts should not rely on a single test and may apply multiple tests with various assumptions. Non-statistical approaches to evaluating publication bias (e.g., searching clinical trials registries, records of drug approving agencies, and scientific conference proceedings) remain essential.
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Literatur
1.
Zurück zum Zitat Begg CB, Berlin JA. Publication bias: a problem in interpreting medical data. J R Stat Soc Ser A (Stat Soc). 1988;151(3):419–63.CrossRef Begg CB, Berlin JA. Publication bias: a problem in interpreting medical data. J R Stat Soc Ser A (Stat Soc). 1988;151(3):419–63.CrossRef
2.
3.
Zurück zum Zitat Thornton A, Lee P. Publication bias in meta-analysis: its causes and consequences. J Clin Epidemiol. 2000;53(2):207–16.CrossRefPubMed Thornton A, Lee P. Publication bias in meta-analysis: its causes and consequences. J Clin Epidemiol. 2000;53(2):207–16.CrossRefPubMed
6.
Zurück zum Zitat Eyding D, Lelgemann M, Grouven U, et al. Reboxetine for acute treatment of major depression: systematic review and meta-analysis of published and unpublished placebo and selective serotonin reuptake inhibitor controlled trials. BMJ. 2010;341:c4737.CrossRefPubMedPubMedCentral Eyding D, Lelgemann M, Grouven U, et al. Reboxetine for acute treatment of major depression: systematic review and meta-analysis of published and unpublished placebo and selective serotonin reuptake inhibitor controlled trials. BMJ. 2010;341:c4737.CrossRefPubMedPubMedCentral
7.
Zurück zum Zitat Murad MH, Montori VM, Ioannidis JPA, et al. How to read a systematic review and meta-analysis and apply the results to patient care: users’ guides to the medical literature. JAMA. 2014;312(2):171–79.CrossRefPubMed Murad MH, Montori VM, Ioannidis JPA, et al. How to read a systematic review and meta-analysis and apply the results to patient care: users’ guides to the medical literature. JAMA. 2014;312(2):171–79.CrossRefPubMed
8.
Zurück zum Zitat Light RJ, Pillemer DB. Summing Up: The Science of Reviewing Research. Cambridge: Harvard University Press; 1984. Light RJ, Pillemer DB. Summing Up: The Science of Reviewing Research. Cambridge: Harvard University Press; 1984.
9.
Zurück zum Zitat Sterne JAC, Egger M. Funnel plots for detecting bias in meta-analysis: guidelines on choice of axis. J Clin Epidemiol. 2001;54(10):1046–55.CrossRefPubMed Sterne JAC, Egger M. Funnel plots for detecting bias in meta-analysis: guidelines on choice of axis. J Clin Epidemiol. 2001;54(10):1046–55.CrossRefPubMed
10.
Zurück zum Zitat Peters JL, Sutton AJ, Jones DR, et al. Performance of the trim and fill method in the presence of publication bias and between-study heterogeneity. Stat Med. 2007;26(25):4544–62.CrossRefPubMed Peters JL, Sutton AJ, Jones DR, et al. Performance of the trim and fill method in the presence of publication bias and between-study heterogeneity. Stat Med. 2007;26(25):4544–62.CrossRefPubMed
11.
12.
Zurück zum Zitat Rothstein HR, Sutton AJ, Borenstein M. Publication Bias in Meta-Analysis: Prevention, Assessment and Adjustments. Chichester: Wiley; 2005.CrossRef Rothstein HR, Sutton AJ, Borenstein M. Publication Bias in Meta-Analysis: Prevention, Assessment and Adjustments. Chichester: Wiley; 2005.CrossRef
13.
Zurück zum Zitat Tang J-L, Liu JLY. Misleading funnel plot for detection of bias in meta-analysis. J Clin Epidemiol. 2000;53(5):477–84.CrossRefPubMed Tang J-L, Liu JLY. Misleading funnel plot for detection of bias in meta-analysis. J Clin Epidemiol. 2000;53(5):477–84.CrossRefPubMed
14.
Zurück zum Zitat Sterne JAC, Gavaghan D, Egger M. Publication and related bias in meta-analysis: power of statistical tests and prevalence in the literature. J Clin Epidemiol. 2000;53(11):1119–29.CrossRefPubMed Sterne JAC, Gavaghan D, Egger M. Publication and related bias in meta-analysis: power of statistical tests and prevalence in the literature. J Clin Epidemiol. 2000;53(11):1119–29.CrossRefPubMed
15.
Zurück zum Zitat Deeks JJ, Macaskill P, Irwig L. The performance of tests of publication bias and other sample size effects in systematic reviews of diagnostic test accuracy was assessed. J Clin Epidemiol. 2005;58(9):882–93.CrossRefPubMed Deeks JJ, Macaskill P, Irwig L. The performance of tests of publication bias and other sample size effects in systematic reviews of diagnostic test accuracy was assessed. J Clin Epidemiol. 2005;58(9):882–93.CrossRefPubMed
16.
Zurück zum Zitat Macaskill P, Walter SD, Irwig L. A comparison of methods to detect publication bias in meta-analysis. Stat Med. 2001;20(4):641–54.CrossRefPubMed Macaskill P, Walter SD, Irwig L. A comparison of methods to detect publication bias in meta-analysis. Stat Med. 2001;20(4):641–54.CrossRefPubMed
17.
Zurück zum Zitat Peters JL, Sutton AJ, Jones DR, et al. Comparison of two methods to detect publication bias in meta-analysis. JAMA. 2006;295(6):676–80.CrossRefPubMed Peters JL, Sutton AJ, Jones DR, et al. Comparison of two methods to detect publication bias in meta-analysis. JAMA. 2006;295(6):676–80.CrossRefPubMed
18.
Zurück zum Zitat Moreno SG, Sutton AJ, Ades AE, et al. Assessment of regression-based methods to adjust for publication bias through a comprehensive simulation study. BMC Med Res Methodol. 2009;9:2.CrossRefPubMedPubMedCentral Moreno SG, Sutton AJ, Ades AE, et al. Assessment of regression-based methods to adjust for publication bias through a comprehensive simulation study. BMC Med Res Methodol. 2009;9:2.CrossRefPubMedPubMedCentral
19.
Zurück zum Zitat Bürkner PC, Doebler P. Testing for publication bias in diagnostic meta-analysis: a simulation study. Stat Med. 2014;33(18):3061–77.CrossRefPubMed Bürkner PC, Doebler P. Testing for publication bias in diagnostic meta-analysis: a simulation study. Stat Med. 2014;33(18):3061–77.CrossRefPubMed
20.
Zurück zum Zitat Begg CB, Mazumdar M. Operating characteristics of a rank correlation test for publication bias. Biometrics. 1994;50(4):1088–101.CrossRefPubMed Begg CB, Mazumdar M. Operating characteristics of a rank correlation test for publication bias. Biometrics. 1994;50(4):1088–101.CrossRefPubMed
21.
Zurück zum Zitat Duval S, Tweedie R. A nonparametric “trim and fill” method of accounting for publication bias in meta-analysis. J Am Stat Assoc. 2000;95(449):89–98. Duval S, Tweedie R. A nonparametric “trim and fill” method of accounting for publication bias in meta-analysis. J Am Stat Assoc. 2000;95(449):89–98.
22.
Zurück zum Zitat Hedges LV. Modeling publication selection effects in meta-analysis. Stat Sci. 1992;7(2):246–55.CrossRef Hedges LV. Modeling publication selection effects in meta-analysis. Stat Sci. 1992;7(2):246–55.CrossRef
23.
Zurück zum Zitat Temple LD. RCurl: General Network (HTTP/FTP/...) Client Interface for R. R package version 1.95-4.8, 2016. Temple LD. RCurl: General Network (HTTP/FTP/...) Client Interface for R. R package version 1.95-4.8, 2016.
24.
Zurück zum Zitat Walter SD, Cook RJ. A comparison of several point estimators of the odds ratio in a single 2 × 2 contingency table. Biometrics. 1991;47(3):795–811.CrossRefPubMed Walter SD, Cook RJ. A comparison of several point estimators of the odds ratio in a single 2 × 2 contingency table. Biometrics. 1991;47(3):795–811.CrossRefPubMed
25.
Zurück zum Zitat Higgins JPT, Green S. Cochrane Handbook for Systematic Reviews of Interventions. Chichester: Wiley; 2008.CrossRef Higgins JPT, Green S. Cochrane Handbook for Systematic Reviews of Interventions. Chichester: Wiley; 2008.CrossRef
26.
Zurück zum Zitat Sweeting MJ, Sutton AJ, Paul LC. What to add to nothing? Use and avoidance of continuity corrections in meta-analysis of sparse data. Stat Med. 2004;23(9):1351–75.CrossRefPubMed Sweeting MJ, Sutton AJ, Paul LC. What to add to nothing? Use and avoidance of continuity corrections in meta-analysis of sparse data. Stat Med. 2004;23(9):1351–75.CrossRefPubMed
27.
Zurück zum Zitat Bradburn MJ, Deeks JJ, Berlin JA, et al. Much ado about nothing: a comparison of the performance of meta-analytical methods with rare events. Stat Med. 2007;26(1):53–77.CrossRefPubMed Bradburn MJ, Deeks JJ, Berlin JA, et al. Much ado about nothing: a comparison of the performance of meta-analytical methods with rare events. Stat Med. 2007;26(1):53–77.CrossRefPubMed
28.
Zurück zum Zitat Cohen J. A coefficient of agreement for nominal scales. Educ Psychosoc Meas. 1960;20(1):37–46.CrossRef Cohen J. A coefficient of agreement for nominal scales. Educ Psychosoc Meas. 1960;20(1):37–46.CrossRef
29.
Zurück zum Zitat Landis JR, Koch GG. The measurement of observer agreement for categorical data. Biometrics. 1977;33(1):159–74.CrossRefPubMed Landis JR, Koch GG. The measurement of observer agreement for categorical data. Biometrics. 1977;33(1):159–74.CrossRefPubMed
30.
Zurück zum Zitat Ioannidis JPA, Trikalinos TA. The appropriateness of asymmetry tests for publication bias in meta-analyses: a large survey. Can Med Assoc J. 2007;176(8):1091–96.CrossRef Ioannidis JPA, Trikalinos TA. The appropriateness of asymmetry tests for publication bias in meta-analyses: a large survey. Can Med Assoc J. 2007;176(8):1091–96.CrossRef
31.
32.
Zurück zum Zitat Harbord RM, Egger M, Sterne JAC. A modified test for small-study effects in meta-analyses of controlled trials with binary endpoints. Stat Med. 2006;25(20):3443–57.CrossRefPubMed Harbord RM, Egger M, Sterne JAC. A modified test for small-study effects in meta-analyses of controlled trials with binary endpoints. Stat Med. 2006;25(20):3443–57.CrossRefPubMed
33.
Zurück zum Zitat Lin L, Chu H, Hodges JS. Alternative measures of between-study heterogeneity in meta-analysis: reducing the impact of outlying studies. Biometrics. 2017;73(1):156–66.CrossRefPubMed Lin L, Chu H, Hodges JS. Alternative measures of between-study heterogeneity in meta-analysis: reducing the impact of outlying studies. Biometrics. 2017;73(1):156–66.CrossRefPubMed
34.
Zurück zum Zitat Normand S-LT. Meta-analysis: formulating, evaluating, combining, and reporting. Stat Med. 1999;18(3):321–59.CrossRef Normand S-LT. Meta-analysis: formulating, evaluating, combining, and reporting. Stat Med. 1999;18(3):321–59.CrossRef
35.
Zurück zum Zitat Borenstein M, Hedges LV, Higgins JPT, et al. A basic introduction to fixed-effect and random-effects models for meta-analysis. Res Synth Methods. 2010;1(2):97–111.CrossRefPubMed Borenstein M, Hedges LV, Higgins JPT, et al. A basic introduction to fixed-effect and random-effects models for meta-analysis. Res Synth Methods. 2010;1(2):97–111.CrossRefPubMed
36.
Zurück zum Zitat Sterne JAC, Sutton AJ, Ioannidis JPA, et al. Recommendations for examining and interpreting funnel plot asymmetry in meta-analyses of randomised controlled trials. BMJ. 2011;343:d4002.CrossRefPubMed Sterne JAC, Sutton AJ, Ioannidis JPA, et al. Recommendations for examining and interpreting funnel plot asymmetry in meta-analyses of randomised controlled trials. BMJ. 2011;343:d4002.CrossRefPubMed
37.
Zurück zum Zitat Peters JL, Sutton AJ, Jones DR, et al. Assessing publication bias in meta-analyses in the presence of between-study heterogeneity. J R Stat Soc Ser A (Stat Soc). 2010;173(3):575–91.CrossRef Peters JL, Sutton AJ, Jones DR, et al. Assessing publication bias in meta-analyses in the presence of between-study heterogeneity. J R Stat Soc Ser A (Stat Soc). 2010;173(3):575–91.CrossRef
39.
Zurück zum Zitat Higgins JPT. Commentary: heterogeneity in meta-analysis should be expected and appropriately quantified. Int J Epidemiol. 2008;37(5):1158–60.CrossRefPubMed Higgins JPT. Commentary: heterogeneity in meta-analysis should be expected and appropriately quantified. Int J Epidemiol. 2008;37(5):1158–60.CrossRefPubMed
40.
41.
Zurück zum Zitat Higgins JPT, Thompson SG. Quantifying heterogeneity in a meta-analysis. Stat Med. 2002;21(11):1539–58.CrossRefPubMed Higgins JPT, Thompson SG. Quantifying heterogeneity in a meta-analysis. Stat Med. 2002;21(11):1539–58.CrossRefPubMed
42.
Zurück zum Zitat Cochran WG. The combination of estimates from different experiments. Biometrics. 1954;10(1):101–29.CrossRef Cochran WG. The combination of estimates from different experiments. Biometrics. 1954;10(1):101–29.CrossRef
43.
Zurück zum Zitat Whitehead A, Whitehead J. A general parametric approach to the meta-analysis of randomized clinical trials. Stat Med. 1991;10(11):1665–77.CrossRefPubMed Whitehead A, Whitehead J. A general parametric approach to the meta-analysis of randomized clinical trials. Stat Med. 1991;10(11):1665–77.CrossRefPubMed
44.
Zurück zum Zitat Alonso-Coello P, Schünemann HJ, Moberg J, et al. GRADE Evidence to Decision (EtD) frameworks: a systematic and transparent approach to making well informed healthcare choices. 1: Introduction. BMJ. 2016;353:i2016.CrossRefPubMed Alonso-Coello P, Schünemann HJ, Moberg J, et al. GRADE Evidence to Decision (EtD) frameworks: a systematic and transparent approach to making well informed healthcare choices. 1: Introduction. BMJ. 2016;353:i2016.CrossRefPubMed
Metadaten
Titel
Empirical Comparison of Publication Bias Tests in Meta-Analysis
verfasst von
Lifeng Lin, PhD
Haitao Chu, MD, PhD
Mohammad Hassan Murad, MD
Chuan Hong, PhD
Zhiyong Qu, PhD
Stephen R. Cole, PhD
Yong Chen, PhD
Publikationsdatum
16.04.2018
Verlag
Springer US
Erschienen in
Journal of General Internal Medicine / Ausgabe 8/2018
Print ISSN: 0884-8734
Elektronische ISSN: 1525-1497
DOI
https://doi.org/10.1007/s11606-018-4425-7

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