Skip to main content

Advertisement

Log in

Species identification of animal cells by nested PCR targeted to mitochondrial DNA

  • Published:
In Vitro Cellular & Developmental Biology - Animal Aims and scope Submit manuscript

Abstract

We developed a highly sensitive and convenient method of nested polymerase chain reaction (PCR) targeted to mitochondrial deoxyribonucleic acid (DNA) to identify animal species quickly in cultured cells. Fourteen vertebrate species, including human, cynomolgus monkey, African green monkey, mouse, rat, Syrian hamster, Chinese hamster, guinea pig, rabbit, dog, cat, cow, pig, and chicken, could be distinguished from each other by nested PCR. The first PCR amplifies mitochondrial DNA fragments with a universal primer pair complementary to the conserved regions of 14 species, and the second PCR amplifies the DNA fragments with species-specific primer pairs from the first products. The species-specific primer pairs were designed to easily distinguish 14 species from each other under standard agarose gel electrophoresis. We further developed the multiplex PCR using a mixture of seven species-specific primer pairs for two groups of animals. One was comprised of human, mouse, rat, cat, pig, cow, and rabbit, and the other was comprised of African green monkey, cynomolgus monkey, Syrian hamster, Chinese hamster, guinea pig, dog, and chicken. The sensitivity of the PCR assay was at least 100 pg DNA/reaction, which was sufficient for the detection of each species of DNA. Furthermore, the nested PCR method was able to identify the species in the interspecies mixture of DNA. Thus, the method developed in this study will provide a useful tool for the authentication of animal species.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Figure 1.
Figure 2.
Figure 3.
Figure 4.
Figure 5.
Figure 6.
Figure 7.

Similar content being viewed by others

References

  • Attardi, B., Attardi, G. Fate of mitochondrial DNA in human-mouse somatic cell hybrids. Proc Nat Acad Sci USA. 129–133; 1972.

  • Doyle, A., Morris, C., Mowles, J. M. Quality control. In: Doyle, A, Hay, R., Kirsop, B. E. eds. Living resources for biotechnology. Animal cells. Chapter 5. Cambridge: Cambridge University Press; 1990: 81–100.

    Google Scholar 

  • Hershfield, B., Chader, G., Aguirre, G. A polymerase chain reaction-based method for the identification of DNA samples from common vertebrate species. Electrophoresis. 15: 880–884; 1994.

    Article  PubMed  CAS  Google Scholar 

  • Liu, M. Y., Lin, S., Liu H., Candal, F., Vafai A. Identification and authentication of animal cell culture by polymerase chain reaction amplification and DNA sequencing. In Vitro Cell Dev Biol Anim. 39: 424–427; 2003.

    Article  PubMed  CAS  Google Scholar 

  • Malouf, A. T., Schnaar, R. L., Coyle, J. T. Characterization of a glutamic acid neurotransmitter binding site on neuroblastoma hybrid cells. J Biol Chem. 259: 12756–12762; 1984.

    PubMed  CAS  Google Scholar 

  • Masters, J. R., Thomson, J. A., Daly-Burns, B., Reid, Y. A., Dirks, W. G., Packer, P., Toji, L. H., Ohno, T., Tanabe, H., Arlett, C. F., Kelland, L. R., Harrison, M., Virmani, A., Ward, T. H., Ayres, K. L., Debenham, P. G. Short tandem repeat profiling provides an international reference standard for human cell lines. Proc Nat Acad Sci USA. 98: 8012–8017; 2001.

    Article  PubMed  CAS  Google Scholar 

  • Montes de Oca, F., Macy, M. L., Shannon, J. E. Isoenzyme characterization of animal cell culture. Proc Soc Exp Biol Med. 132: 462–469; 1969.

    PubMed  CAS  Google Scholar 

  • Naito, E., Dewa, K., Yamanouchi, H., Kominami, R. Ribosomal ribonucleic acid (rRNA) gene typing for species identification. J Forensic Sci. 37: 396–403; 1992.

    PubMed  CAS  Google Scholar 

  • Nelson-Rees, W. A., Daniels, D. W., Flandermeyer, R. R. Cross-contamination of cells in culture. Science. 212: 446–452; 1981.

    Article  PubMed  CAS  Google Scholar 

  • Nims, R. W. Shoemaker, A. P., Bauernschub, M. A., Rec L. J., Harbell, J. W. Sensitivity of isoenzyme analysis for the detection of interspecies cell line cross-contamination. In Vitro Cell Dev Biol Anim. 34: 35–39; 1998.

    Article  PubMed  CAS  Google Scholar 

  • Parodi, B., Aresu, O., Bini, D., Lorenzini, R., Schena, F., Visconti, P., Cesaro, M., Ferrera, D., Andreotti, V., Ruzzon, T. Species identification and confirmation of human and animal cell lines: a PCR-based method. BioTechniques. 32: 432–440; 2002.

    PubMed  CAS  Google Scholar 

  • Saito, H., Uchiyama, K., Nakamura, I., Hiraoka, H., Yamaguchi, Y., Taniguchi, M. Characterization of a human monoclonal antibody with broad reactivity to malignant tumor cells. J Natl Cancer Inst. 80: 728–734; 1988.

    Article  PubMed  CAS  Google Scholar 

  • Steube, K. G., Grunicke, D., Drexler, H. G. Isoenzyme analysis as a rapid method for the examination of the species identity of cell cultures. In Vitro Cell Dev Biol Anim. 31: 115–119; 1995.

    Article  PubMed  CAS  Google Scholar 

  • Steube, K. G., Meyer, C., Uphoff, C. C., Drexler, H. G. A simple method using β-globin polymerase chain reaction for the species identification of animal cell lines—a progress report. In Vitro Cell Dev Biol Anim. 39: 468–475; 2003.

    Article  PubMed  CAS  Google Scholar 

  • Stulberg, C. S. Extrinsic cell contamination of tissue culture. In: Fogh, J. ed. Contamination in tissue culture. New York: Academic Press; 1973:2–23.

    Google Scholar 

  • Tanabe, H., Takada, Y., Minegishi, D., Kurematsu, M., Masui, T., Mizusawa, H. Cell line individualization by STR multiplex system in the cell bank found cross-contamination between ECV304 and EJ-1/T24. Tissue Culture Research Communications. 18: 329–338; 1999.

    Google Scholar 

  • Yamaoka, M., Mikami, T., Ono, T., Nakada, K., Hayashi, J. Mice with only rat mtDNA are required as models of mitochondrial diseases. Biochem Biophys Res Commun. 282: 707–711; 2001.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Motonobu Satoh.

Additional information

Editor: J. Denry Sato

Rights and permissions

Reprints and permissions

About this article

Cite this article

Ono, K., Satoh, M., Yoshida, T. et al. Species identification of animal cells by nested PCR targeted to mitochondrial DNA. In Vitro Cell.Dev.Biol.-Animal 43, 168–175 (2007). https://doi.org/10.1007/s11626-007-9033-5

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11626-007-9033-5

Keywords

Navigation