Network inference with confidence from multivariate time series

Mark A. Kramer, Uri T. Eden, Sydney S. Cash, and Eric D. Kolaczyk
Phys. Rev. E 79, 061916 – Published 11 June 2009

Abstract

Networks—collections of interacting elements or nodes—abound in the natural and manmade worlds. For many networks, complex spatiotemporal dynamics stem from patterns of physical interactions unknown to us. To infer these interactions, it is common to include edges between those nodes whose time series exhibit sufficient functional connectivity, typically defined as a measure of coupling exceeding a predetermined threshold. However, when uncertainty exists in the original network measurements, uncertainty in the inferred network is likely, and hence a statistical propagation of error is needed. In this manuscript, we describe a principled and systematic procedure for the inference of functional connectivity networks from multivariate time series data. Our procedure yields as output both the inferred network and a quantification of uncertainty of the most fundamental interest: uncertainty in the number of edges. To illustrate this approach, we apply a measure of linear coupling to simulated data and electrocorticogram data recorded from a human subject during an epileptic seizure. We demonstrate that the procedure is accurate and robust in both the determination of edges and the reporting of uncertainty associated with that determination.

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  • Received 9 March 2009

DOI:https://doi.org/10.1103/PhysRevE.79.061916

©2009 American Physical Society

Authors & Affiliations

Mark A. Kramer1,*, Uri T. Eden1, Sydney S. Cash2, and Eric D. Kolaczyk1

  • 1Department of Mathematics and Statistics, Boston University, Boston, Massachusetts 02215, USA
  • 2Department of Neurology, Epilepsy Service, Harvard Medical School, ACC 835, Massachusetts General Hospital, 55 Fruit Street, Boston, Massachusetts 02114, USA

  • *mak@bu.edu

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Vol. 79, Iss. 6 — June 2009

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